NO12G02580.1, NO12G02580.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G02580.1
Unique Name	NO12G02580.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2574
Alignment location	chr12:732057..734923 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:732057..734923 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO12G02580.1 vs.
Match: XP_005854739.1 (hypothetical protein NGA_2025900, partial [Nannochloropsis gaditana CCMP526]; EKU21621.1 hypothetical protein NGA_2025900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 152.9 bits (385), Expect = 3.900e-33
Identity = 115/257 (44.75%), Postives = 159/257 (61.87%), Query Frame = 0

Query:  142 SRPASNGVNVDVYGHIPPKEPKFNFQCSACGRSVSVLRYAPHLDKCI-NNKAGRNSSSQRKQGLGGSGSGSGMDVAGSVDPVAAAIAASAASALLLKKKKRKRNQNTHPELGSYVFASDMVKGGAMLLRMRVDTDGRAVRVLPPAEID-AGIM-------------PPPQLLLQQQQQPRSLGKNATQQKQQRQAPRLPMTLTDDGDGTAAAAAAAAAAAAAALPPMQQQQQQAALRLQQ--QQQPQLQQRQHQQHQ 382
            ++ ++NG + D+YG +PPKEP++NFQCSAC RSVSVLRYAPHLDKC+  NK+GR++ SQRK   G SG G+G D   S DPVAAA+AASAASA L+KKKKRKRN N+HP++ SY+F       G ++LR+RVD DGRAVRVL P EI   G++             PP  +  ++QQQ +++ K  ++ K++     +P  +         +AA    A A+  PP +  Q Q+     Q  Q+ P + Q Q+   Q
Sbjct:    1 AKASANGNSFDIYGRVPPKEPRYNFQCSACARSVSVLRYAPHLDKCLGKNKSGRSAGSQRKSANGISGYGNGTD---SKDPVAAAVAASAASA-LIKKKKRKRNFNSHPDVASYIFPV-----GPIVLRLRVDADGRAVRVLSPHEIAVVGLITAPSVPALGEEKKPPKAMTTKKQQQEKNVKK--SKGKEEFSRGLIPKEIDVIPSPAPMSAAVLPQAGASRDPPFRIDQGQSHSCPPQYVQRSPSIVQTQYMSSQ 246

The following BLAST results are available for this feature:

BLAST of NO12G02580.1 vs.

BLAST of NO12G02580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005854739.1	3.900e-33	44.75	hypothetical protein NGA_2025900, partial [Nannoch...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO12G02580	NO12G02580	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO12G02580.1	NO12G02580.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO12G02580.1.cds1	NO12G02580.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G02580.1.cds2	NO12G02580.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr12:732057..734923-
coding sequence from alignment at chr12:732057..734923-

mRNA sequence

>NO12G02580.1 ID=NO12G02580.1|Name=NO12G02580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2574bp
ATGGCGATGGCAGTGCAGCGACAACGACAGCGCCAAAAAACTAAGCAGCG
GCAGGACGACGAGGTGGTGAAGAAGGAGGACAAGGAGGGTGACGTCAACA
TAGCCAGCGTGGTCGTGTCGGCGCCCGTGCCTCAAAGCATTCAATTTCTT
GAATCCGCAACAGAGGATGGCAACATCGATAAAGAGCGGCCGCAGCAGCA
ACAAGGGCAACATGCCGCCGCCACAGATCTGGATCCCCCCGCCACAGAGC
TGGAGACTGACATCCTCAACGCTCTCCTCGACCTGCTCTGCAAAGAAGTA
TGCCACCAAGTCCATCGCGCTGTCAAAACAGGCCTCATGACCCGCGCCGA
GATCCTTGCCGTCCTCCCTTCCGACACGTCCCCCTTCCCCTCCTCCTCCT
CCCCTTCTACCAACGGCATTCTCTCGCGTCCTGCAAGTAACGGTGTTAAT
GTTGATGTCTACGGCCACATCCCTCCAAAAGAACCAAAATTTAACTTTCA
ATGCAGTGCCTGTGGCCGCAGCGTGAGTGTCCTACGCTATGCCCCGCATC
TCGACAAATGCATCAACAACAAGGCCGGGAGGAATAGCAGTTCGCAGCGC
AAGCAAGGATTGGGAGGATCGGGCTCGGGGAGTGGGATGGATGTTGCGGG
CAGCGTCGACCCTGTTGCGGCTGCTATTGCTGCGTCGGCAGCATCGGCGC
TGCTTCTAAAGAAGAAGAAGCGGAAGCGCAACCAGAACACGCACCCCGAG
CTGGGTTCGTATGTGTTTGCGAGCGATATGGTTAAGGGGGGGGCGATGTT
GTTGCGCATGCGTGTAGATACAGACGGAAGGGCGGTCCGGGTCCTCCCTC
CCGCTGAAATAGATGCAGGGATTATGCCGCCTCCTCAACTGCTGCTGCAG
CAGCAGCAGCAGCCACGATCATTGGGGAAGAATGCGACGCAGCAAAAACA
ACAGAGACAGGCCCCCCGGCTGCCTATGACCCTTACCGATGATGGTGATG
GAACTGCTGCTGCTGCCGCCGCTGCTGCTGCTGCTGCTGCTGCTGCCCTT
CCTCCGATGCAGCAACAGCAGCAGCAAGCTGCCCTCCGTCTTCAGCAACA
ACAACAGCCGCAACTCCAACAGCGTCAGCATCAGCAGCATCAGTCAGGGC
CGGGGCTACAGTATGCCCGTTGGAGTCCCATAAATCCTTCGTTTCCCGTC
CCCTCATCCTCCCCTTCCTCTTCTTTCGCCCTTTCTACACATCAAGGATA
CCCTCCCCTCCCGCCGAGTACCTCTCCTTCTTCTTTGTACTCAACTTCGT
CTTTCGTTCACACAGCATCATCTCCGCCTCTTTCTGTGGGGGGAGAAAGA
GGAGGAGGAGGAGGAAGAGATGGAAGAAGAGGAGGAGGAAGAGGAGGAGG
AAAGATTGGACAGGTATGGCCAGCAGAAAACCAACAGCAGCAGCAGCTTC
ACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAGCAGCAGCAGCAGCAATACCTCACCGCTCAACAGCAGGGG
CAATTGCAACAGCTTCAGCAGCAGCAGCAGCAGAAGCAGCAGAAGCAGCA
GAAGCAGCACCAGCACCAGCATCAGCAGCACCAGCACCAGCACCAGCATC
AGCATCAGCACCAGCACCAGCACCAGCAGCACGAGCAGCACCACCAGCAC
GACCAGCAGCAGCATCAGCAGCAGCAGCAGCACCAGCACCAGCACCAGCA
CCAGCACCAGCAGCAAGGACGTCTTCCGAGACAACAGCCCCAAGCTTCGC
TGACCGCCGGCCCGAAAAATCTCAGCCAGCCCATCTTGGCCCAAGGGCGC
AGCGGTGCAGGAGCAGGAGGCACCGTGGCCCGAAACCAGCAACTCTCGCC
AACCCCACGTCCCACGGCTATGCCCCCCCTACAGAAATTGCAGCCACCGC
AGCAGCAGCAGATCATGATAGTCCAGCAGCAGCATTTGATACAGCAACAG
CAATTACAAGAGCAGCAGCAACAGGAGTTACAACAACAGCAAGGCCTCTT
CCCGTCGCATGCATCTTTACCACGGCAACATCCTCCTAGACATGCTGTGC
AGCGCGCCCTCCCGCCCAAACAAGGTTCTCCTTTCCCACCTTACCAGTTC
CCTTCTACTTAGTTTCGTCGCAATGGCAAGTCAATAAATAATTTAGAAAT
ATAGTGTGATAGCTCCATAGGACCAGTCAGAGTAGGCTCCAAATATTCAA
AGGCTACAAAGCGGCAATATTCAGATAAAAGTGAGAGTGTAAACAATGCA
AGGACCAGTAGACATTTAGGGAAATGAGATAGCCACAGGAAAGATGGTTG
TTCTGGTGCATATTCAGAGCCCCTTTCATCAGACGCAAGATAAATGCCAG
CCAACGCACAGAAAGCTACATAGGAAACAAAATCGGCACTCACGAAAGAG
GAAATGAAATCAATGCTAAGGAAA

protein sequence of NO12G02580.1

>NO12G02580.1-protein ID=NO12G02580.1-protein|Name=NO12G02580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=754bp
MAMAVQRQRQRQKTKQRQDDEVVKKEDKEGDVNIASVVVSAPVPQSIQFL
ESATEDGNIDKERPQQQQGQHAAATDLDPPATELETDILNALLDLLCKEV
CHQVHRAVKTGLMTRAEILAVLPSDTSPFPSSSSPSTNGILSRPASNGVN
VDVYGHIPPKEPKFNFQCSACGRSVSVLRYAPHLDKCINNKAGRNSSSQR
KQGLGGSGSGSGMDVAGSVDPVAAAIAASAASALLLKKKKRKRNQNTHPE
LGSYVFASDMVKGGAMLLRMRVDTDGRAVRVLPPAEIDAGIMPPPQLLLQ
QQQQPRSLGKNATQQKQQRQAPRLPMTLTDDGDGTAAAAAAAAAAAAAAL
PPMQQQQQQAALRLQQQQQPQLQQRQHQQHQSGPGLQYARWSPINPSFPV
PSSSPSSSFALSTHQGYPPLPPSTSPSSLYSTSSFVHTASSPPLSVGGER
GGGGGRDGRRGGGRGGGKIGQVWPAENQQQQQLHQQQQQQQQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYLTAQQQG
QLQQLQQQQQQKQQKQQKQHQHQHQQHQHQHQHQHQHQHQHQQHEQHHQH
DQQQHQQQQQHQHQHQHQHQQQGRLPRQQPQASLTAGPKNLSQPILAQGR
SGAGAGGTVARNQQLSPTPRPTAMPPLQKLQPPQQQQIMIVQQQHLIQQQ
QLQEQQQQELQQQQGLFPSHASLPRQHPPRHAVQRALPPKQGSPFPPYQF
PST*

mRNA from alignment at chr12:732057..734923-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO12G02580.1 ID=NO12G02580.1|Name=NO12G02580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2867bp|location=Sequence derived from alignment at chr12:732057..734923- (Nannochloropsis oceanica)
ATGGCGATGGCAGTGCAGCGACAACGACAGCGCCAAAAAACTAAGCAGCG
GCAGGACGACGAGGTGGTGAAGAAGGAGGACAAGGAGGGTGACGTCAACA
TAGCCAGCGTGGTCGTGTCGGCGCCCGTGCCTCAAAGCATTCAATTTCTT
GAATCCGCAACAGAGGATGGCAACATCGATAAAGAGCGGCCGCAGCAGCA
ACAAGGGCAACATGCCGCCGCCACAGATCTGGATCCCCCCGCCACAGAGG
TAAGTCCTTCCTTGAAATGCGTGCCATCTATCACGACGAGCACTCGCATG
TATGTGCATCAGTTCTGGCTCATCTTAACCACCGTGTCTCCCCTCTCTCA
CACCACCCTCTATTCCCTCCTTTCGATCCGCATGCCTGCTGATCGATTGT
TTAAATATGCGCCTGTCGATGTGCAGACATCCAACTGCGCATCAACCCAT
CTTTATCCAATTCTAATTTTCTGTTCACAACCCTCTCCTCCCCTCAAAAT
GACCCCATACCTCCTCTCTCACACCATTCATTCTCCACACAGCTGGAGAC
TGACATCCTCAACGCTCTCCTCGACCTGCTCTGCAAAGAAGTATGCCACC
AAGTCCATCGCGCTGTCAAAACAGGCCTCATGACCCGCGCCGAGATCCTT
GCCGTCCTCCCTTCCGACACGTCCCCCTTCCCCTCCTCCTCCTCCCCTTC
TACCAACGGCATTCTCTCGCGTCCTGCAAGTAACGGTGTTAATGTTGATG
TCTACGGCCACATCCCTCCAAAAGAACCAAAATTTAACTTTCAATGCAGT
GCCTGTGGCCGCAGCGTGAGTGTCCTACGCTATGCCCCGCATCTCGACAA
ATGCATCAACAACAAGGCCGGGAGGAATAGCAGTTCGCAGCGCAAGCAAG
GATTGGGAGGATCGGGCTCGGGGAGTGGGATGGATGTTGCGGGCAGCGTC
GACCCTGTTGCGGCTGCTATTGCTGCGTCGGCAGCATCGGCGCTGCTTCT
AAAGAAGAAGAAGCGGAAGCGCAACCAGAACACGCACCCCGAGCTGGGTT
CGTATGTGTTTGCGAGCGATATGGTTAAGGGGGGGGCGATGTTGTTGCGC
ATGCGTGTAGATACAGACGGAAGGGCGGTCCGGGTCCTCCCTCCCGCTGA
AATAGATGCAGGGATTATGCCGCCTCCTCAACTGCTGCTGCAGCAGCAGC
AGCAGCCACGATCATTGGGGAAGAATGCGACGCAGCAAAAACAACAGAGA
CAGGCCCCCCGGCTGCCTATGACCCTTACCGATGATGGTGATGGAACTGC
TGCTGCTGCCGCCGCTGCTGCTGCTGCTGCTGCTGCTGCCCTTCCTCCGA
TGCAGCAACAGCAGCAGCAAGCTGCCCTCCGTCTTCAGCAACAACAACAG
CCGCAACTCCAACAGCGTCAGCATCAGCAGCATCAGTCAGGGCCGGGGCT
ACAGTATGCCCGTTGGAGTCCCATAAATCCTTCGTTTCCCGTCCCCTCAT
CCTCCCCTTCCTCTTCTTTCGCCCTTTCTACACATCAAGGATACCCTCCC
CTCCCGCCGAGTACCTCTCCTTCTTCTTTGTACTCAACTTCGTCTTTCGT
TCACACAGCATCATCTCCGCCTCTTTCTGTGGGGGGAGAAAGAGGAGGAG
GAGGAGGAAGAGATGGAAGAAGAGGAGGAGGAAGAGGAGGAGGAAAGATT
GGACAGGTATGGCCAGCAGAAAACCAACAGCAGCAGCAGCTTCACCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAGCAGCAGCAGCAGCAATACCTCACCGCTCAACAGCAGGGGCAATTGC
AACAGCTTCAGCAGCAGCAGCAGCAGAAGCAGCAGAAGCAGCAGAAGCAG
CACCAGCACCAGCATCAGCAGCACCAGCACCAGCACCAGCATCAGCATCA
GCACCAGCACCAGCACCAGCAGCACGAGCAGCACCACCAGCACGACCAGC
AGCAGCATCAGCAGCAGCAGCAGCACCAGCACCAGCACCAGCACCAGCAC
CAGCAGCAAGGACGTCTTCCGAGACAACAGCCCCAAGCTTCGCTGACCGC
CGGCCCGAAAAATCTCAGCCAGCCCATCTTGGCCCAAGGGCGCAGCGGTG
CAGGAGCAGGAGGCACCGTGGCCCGAAACCAGCAACTCTCGCCAACCCCA
CGTCCCACGGCTATGCCCCCCCTACAGAAATTGCAGCCACCGCAGCAGCA
GCAGATCATGATAGTCCAGCAGCAGCATTTGATACAGCAACAGCAATTAC
AAGAGCAGCAGCAACAGGAGTTACAACAACAGCAAGGCCTCTTCCCGTCG
CATGCATCTTTACCACGGCAACATCCTCCTAGACATGCTGTGCAGCGCGC
CCTCCCGCCCAAACAAGGTTCTCCTTTCCCACCTTACCAGTTCCCTTCTA
CTTAGTTTCGTCGCAATGGCAAGTCAATAAATAATTTAGAAATATAGTGT
GATAGCTCCATAGGACCAGTCAGAGTAGGCTCCAAATATTCAAAGGCTAC
AAAGCGGCAATATTCAGATAAAAGTGAGAGTGTAAACAATGCAAGGACCA
GTAGACATTTAGGGAAATGAGATAGCCACAGGAAAGATGGTTGTTCTGGT
GCATATTCAGAGCCCCTTTCATCAGACGCAAGATAAATGCCAGCCAACGC
ACAGAAAGCTACATAGGAAACAAAATCGGCACTCACGAAAGAGGAAATGA
AATCAATGCTAAGGAAA

Coding sequence (CDS) from alignment at chr12:732057..734923-

>NO12G02580.1 ID=NO12G02580.1|Name=NO12G02580.1|organism=Nannochloropsis oceanica|type=CDS|length=2262bp|location=Sequence derived from alignment at chr12:732057..734923- (Nannochloropsis oceanica)
ATGGCGATGGCAGTGCAGCGACAACGACAGCGCCAAAAAACTAAGCAGCG
GCAGGACGACGAGGTGGTGAAGAAGGAGGACAAGGAGGGTGACGTCAACA
TAGCCAGCGTGGTCGTGTCGGCGCCCGTGCCTCAAAGCATTCAATTTCTT
GAATCCGCAACAGAGGATGGCAACATCGATAAAGAGCGGCCGCAGCAGCA
ACAAGGGCAACATGCCGCCGCCACAGATCTGGATCCCCCCGCCACAGAGC
TGGAGACTGACATCCTCAACGCTCTCCTCGACCTGCTCTGCAAAGAAGTA
TGCCACCAAGTCCATCGCGCTGTCAAAACAGGCCTCATGACCCGCGCCGA
GATCCTTGCCGTCCTCCCTTCCGACACGTCCCCCTTCCCCTCCTCCTCCT
CCCCTTCTACCAACGGCATTCTCTCGCGTCCTGCAAGTAACGGTGTTAAT
GTTGATGTCTACGGCCACATCCCTCCAAAAGAACCAAAATTTAACTTTCA
ATGCAGTGCCTGTGGCCGCAGCGTGAGTGTCCTACGCTATGCCCCGCATC
TCGACAAATGCATCAACAACAAGGCCGGGAGGAATAGCAGTTCGCAGCGC
AAGCAAGGATTGGGAGGATCGGGCTCGGGGAGTGGGATGGATGTTGCGGG
CAGCGTCGACCCTGTTGCGGCTGCTATTGCTGCGTCGGCAGCATCGGCGC
TGCTTCTAAAGAAGAAGAAGCGGAAGCGCAACCAGAACACGCACCCCGAG
CTGGGTTCGTATGTGTTTGCGAGCGATATGGTTAAGGGGGGGGCGATGTT
GTTGCGCATGCGTGTAGATACAGACGGAAGGGCGGTCCGGGTCCTCCCTC
CCGCTGAAATAGATGCAGGGATTATGCCGCCTCCTCAACTGCTGCTGCAG
CAGCAGCAGCAGCCACGATCATTGGGGAAGAATGCGACGCAGCAAAAACA
ACAGAGACAGGCCCCCCGGCTGCCTATGACCCTTACCGATGATGGTGATG
GAACTGCTGCTGCTGCCGCCGCTGCTGCTGCTGCTGCTGCTGCTGCCCTT
CCTCCGATGCAGCAACAGCAGCAGCAAGCTGCCCTCCGTCTTCAGCAACA
ACAACAGCCGCAACTCCAACAGCGTCAGCATCAGCAGCATCAGTCAGGGC
CGGGGCTACAGTATGCCCGTTGGAGTCCCATAAATCCTTCGTTTCCCGTC
CCCTCATCCTCCCCTTCCTCTTCTTTCGCCCTTTCTACACATCAAGGATA
CCCTCCCCTCCCGCCGAGTACCTCTCCTTCTTCTTTGTACTCAACTTCGT
CTTTCGTTCACACAGCATCATCTCCGCCTCTTTCTGTGGGGGGAGAAAGA
GGAGGAGGAGGAGGAAGAGATGGAAGAAGAGGAGGAGGAAGAGGAGGAGG
AAAGATTGGACAGGTATGGCCAGCAGAAAACCAACAGCAGCAGCAGCTTC
ACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAGCAGCAGCAGCAGCAATACCTCACCGCTCAACAGCAGGGG
CAATTGCAACAGCTTCAGCAGCAGCAGCAGCAGAAGCAGCAGAAGCAGCA
GAAGCAGCACCAGCACCAGCATCAGCAGCACCAGCACCAGCACCAGCATC
AGCATCAGCACCAGCACCAGCACCAGCAGCACGAGCAGCACCACCAGCAC
GACCAGCAGCAGCATCAGCAGCAGCAGCAGCACCAGCACCAGCACCAGCA
CCAGCACCAGCAGCAAGGACGTCTTCCGAGACAACAGCCCCAAGCTTCGC
TGACCGCCGGCCCGAAAAATCTCAGCCAGCCCATCTTGGCCCAAGGGCGC
AGCGGTGCAGGAGCAGGAGGCACCGTGGCCCGAAACCAGCAACTCTCGCC
AACCCCACGTCCCACGGCTATGCCCCCCCTACAGAAATTGCAGCCACCGC
AGCAGCAGCAGATCATGATAGTCCAGCAGCAGCATTTGATACAGCAACAG
CAATTACAAGAGCAGCAGCAACAGGAGTTACAACAACAGCAAGGCCTCTT
CCCGTCGCATGCATCTTTACCACGGCAACATCCTCCTAGACATGCTGTGC
AGCGCGCCCTCCCGCCCAAACAAGGTTCTCCTTTCCCACCTTACCAGTTC
CCTTCTACTTAG

Synonyms

Publications