NO12G02580, NO12G02580 (gene) Nannochloropsis oceanica

Overview
NameNO12G02580
Unique NameNO12G02580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2867
Alignment locationchr12:732057..734923 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:732057..734923 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013246SAGA_su_Sgf11
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
[Close]
BLAST of NO12G02580 vs. NCBI_GenBank
Match: XP_005854739.1 (hypothetical protein NGA_2025900, partial [Nannochloropsis gaditana CCMP526] >EKU21621.1 hypothetical protein NGA_2025900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 105.5 bits (262), Expect = 7.200e-19
Identity = 81/147 (55.10%), Postives = 100/147 (68.03%), Query Frame = 0 
Query:  142 SRPASNGVNVDVYGHIPPKEPKFNFQCSACGRSVSVLRYAPHLDKCI-NNKAGRNSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPELGSYVFASDMVKGGAMLLRMRVDTDGRAVRVLPPAEI 288
            ++ ++NG + D+YG +PPKEP++NFQCSAC RSVSVLRYAPHLDKC+  NK+GR++ SQ                       XXXXXXXXXXXXXXXXXXXXXX    P++ SY+F       G ++LR+RVD DGRAVRVL P EI
Sbjct:    1 AKASANGNSFDIYGRVPPKEPRYNFQCSACARSVSVLRYAPHLDKCLGKNKSGRSAGSQ----RKSANGISGYGNGTDSKDPXXXXXXXXXXXXXXXXXXXXXXFNSHPDVASYIFPV-----GPIVLRLRVDADGRAVRVLSPHEI 138
[Close]
BLAST of NO12G02580 vs. NCBI_GenBank
Match: CBJ32378.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 73.2 bits (178), Expect = 4.000e-9
Identity = 43/123 (34.96%), Postives = 63/123 (51.22%), Query Frame = 0 
Query:   78 DPPATELETDILNALLDL-LCKEVCHQVHRAVKTGLMTRAEILAVLPSDTSPFPSSSSPSTNGILSRPASNGVNVDVYGHIPPKEPKFNFQCSACGRSVSVLRYAPHLDKC-INNKAGRNSSS 199
            DP     E D + +  +L LC++V  ++HR + TG++T+  + A      +P P S +                 DVYG IPP+EP  +  C +C R+V   RYAPHLDKC + +  GR S S
Sbjct:   18 DPIDLRQEADTIYSAFELSLCRDVVFELHRELHTGVLTKERLWA---EHNNPPPKSVAGG---------------DVYGRIPPREPSTSITCPSCNRAVGAARYAPHLDKCALGSSRGRASRS 122
The following BLAST results are available for this feature:
BLAST of NO12G02580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005854739.17.200e-1955.10hypothetical protein NGA_2025900, partial [Nannoch... [more]
CBJ32378.14.000e-934.96conserved unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010197NSK010197Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02580.1NO12G02580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|66394gene_5425Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02580.1NO12G02580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02580 ID=NO12G02580|Name=NO12G02580|organism=Nannochloropsis oceanica|type=gene|length=2867bp
ATGGCGATGGCAGTGCAGCGACAACGACAGCGCCAAAAAACTAAGCAGCG
GCAGGACGACGAGGTGGTGAAGAAGGAGGACAAGGAGGGTGACGTCAACA
TAGCCAGCGTGGTCGTGTCGGCGCCCGTGCCTCAAAGCATTCAATTTCTT
GAATCCGCAACAGAGGATGGCAACATCGATAAAGAGCGGCCGCAGCAGCA
ACAAGGGCAACATGCCGCCGCCACAGATCTGGATCCCCCCGCCACAGAGg
taagtccttccttgaaatgcgtgccatctatcacgacgagcactcgcatg
tatgtgcatcagttctggctcatcttaaccaccgtgtctcccctctctca
caccaccctctattccctcctttcgatccgcatgcctgctgatcgattgt
ttaaatatgcgcctgtcgatgtgcagacatccaactgcgcatcaacccat
ctttatccaattctaattttctgttcacaaccctctcctcccctcaaaat
gaccccatacctcctctctcacaccattcattctccacacagCTGGAGAC
TGACATCCTCAACGCTCTCCTCGACCTGCTCTGCAAAGAAGTATGCCACC
AAGTCCATCGCGCTGTCAAAACAGGCCTCATGACCCGCGCCGAGATCCTT
GCCGTCCTCCCTTCCGACACGTCCCCCTTCCCCTCCTCCTCCTCCCCTTC
TACCAACGGCATTCTCTCGCGTCCTGCAAGTAACGGTGTTAATGTTGATG
TCTACGGCCACATCCCTCCAAAAGAACCAAAATTTAACTTTCAATGCAGT
GCCTGTGGCCGCAGCGTGAGTGTCCTACGCTATGCCCCGCATCTCGACAA
ATGCATCAACAACAAGGCCGGGAGGAATAGCAGTTCGCAGCGCAAGCAAG
GATTGGGAGGATCGGGCTCGGGGAGTGGGATGGATGTTGCGGGCAGCGTC
GACCCTGTTGCGGCTGCTATTGCTGCGTCGGCAGCATCGGCGCTGCTTCT
AAAGAAGAAGAAGCGGAAGCGCAACCAGAACACGCACCCCGAGCTGGGTT
CGTATGTGTTTGCGAGCGATATGGTTAAGGGGGGGGCGATGTTGTTGCGC
ATGCGTGTAGATACAGACGGAAGGGCGGTCCGGGTCCTCCCTCCCGCTGA
AATAGATGCAGGGATTATGCCGCCTCCTCAACTGCTGCTGCAGCAGCAGC
AGCAGCCACGATCATTGGGGAAGAATGCGACGCAGCAAAAACAACAGAGA
CAGGCCCCCCGGCTGCCTATGACCCTTACCGATGATGGTGATGGAACTGC
TGCTGCTGCCGCCGCTGCTGCTGCTGCTGCTGCTGCTGCCCTTCCTCCGA
TGCAGCAACAGCAGCAGCAAGCTGCCCTCCGTCTTCAGCAACAACAACAG
CCGCAACTCCAACAGCGTCAGCATCAGCAGCATCAGTCAGGGCCGGGGCT
ACAGTATGCCCGTTGGAGTCCCATAAATCCTTCGTTTCCCGTCCCCTCAT
CCTCCCCTTCCTCTTCTTTCGCCCTTTCTACACATCAAGGATACCCTCCC
CTCCCGCCGAGTACCTCTCCTTCTTCTTTGTACTCAACTTCGTCTTTCGT
TCACACAGCATCATCTCCGCCTCTTTCTGTGGGGGGAGAAAGAGGAGGAG
GAGGAGGAAGAGATGGAAGAAGAGGAGGAGGAAGAGGAGGAGGAAAGATT
GGACAGGTATGGCCAGCAGAAAACCAACAGCAGCAGCAGCTTCACCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAGCAGCAGCAGCAGCAATACCTCACCGCTCAACAGCAGGGGCAATTGC
AACAGCTTCAGCAGCAGCAGCAGCAGAAGCAGCAGAAGCAGCAGAAGCAG
CACCAGCACCAGCATCAGCAGCACCAGCACCAGCACCAGCATCAGCATCA
GCACCAGCACCAGCACCAGCAGCACGAGCAGCACCACCAGCACGACCAGC
AGCAGCATCAGCAGCAGCAGCAGCACCAGCACCAGCACCAGCACCAGCAC
CAGCAGCAAGGACGTCTTCCGAGACAACAGCCCCAAGCTTCGCTGACCGC
CGGCCCGAAAAATCTCAGCCAGCCCATCTTGGCCCAAGGGCGCAGCGGTG
CAGGAGCAGGAGGCACCGTGGCCCGAAACCAGCAACTCTCGCCAACCCCA
CGTCCCACGGCTATGCCCCCCCTACAGAAATTGCAGCCACCGCAGCAGCA
GCAGATCATGATAGTCCAGCAGCAGCATTTGATACAGCAACAGCAATTAC
AAGAGCAGCAGCAACAGGAGTTACAACAACAGCAAGGCCTCTTCCCGTCG
CATGCATCTTTACCACGGCAACATCCTCCTAGACATGCTGTGCAGCGCGC
CCTCCCGCCCAAACAAGGTTCTCCTTTCCCACCTTACCAGTTCCCTTCTA
CTTAGTTTCGTCGCAATGGCAAGTCAATAAATAATTTAGAAATATAGTGT
GATAGCTCCATAGGACCAGTCAGAGTAGGCTCCAAATATTCAAAGGCTAC
AAAGCGGCAATATTCAGATAAAAGTGAGAGTGTAAACAATGCAAGGACCA
GTAGACATTTAGGGAAATGAGATAGCCACAGGAAAGATGGTTGTTCTGGT
GCATATTCAGAGCCCCTTTCATCAGACGCAAGATAAATGCCAGCCAACGC
ACAGAAAGCTACATAGGAAACAAAATCGGCACTCACGAAAGAGGAAATGA
AATCAATGCTAAGGAAA
back to top

protein sequence of NO12G02580.1

>NO12G02580.1-protein ID=NO12G02580.1-protein|Name=NO12G02580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=754bp
MAMAVQRQRQRQKTKQRQDDEVVKKEDKEGDVNIASVVVSAPVPQSIQFL
ESATEDGNIDKERPQQQQGQHAAATDLDPPATELETDILNALLDLLCKEV
CHQVHRAVKTGLMTRAEILAVLPSDTSPFPSSSSPSTNGILSRPASNGVN
VDVYGHIPPKEPKFNFQCSACGRSVSVLRYAPHLDKCINNKAGRNSSSQR
KQGLGGSGSGSGMDVAGSVDPVAAAIAASAASALLLKKKKRKRNQNTHPE
LGSYVFASDMVKGGAMLLRMRVDTDGRAVRVLPPAEIDAGIMPPPQLLLQ
QQQQPRSLGKNATQQKQQRQAPRLPMTLTDDGDGTAAAAAAAAAAAAAAL
PPMQQQQQQAALRLQQQQQPQLQQRQHQQHQSGPGLQYARWSPINPSFPV
PSSSPSSSFALSTHQGYPPLPPSTSPSSLYSTSSFVHTASSPPLSVGGER
GGGGGRDGRRGGGRGGGKIGQVWPAENQQQQQLHQQQQQQQQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYLTAQQQG
QLQQLQQQQQQKQQKQQKQHQHQHQQHQHQHQHQHQHQHQHQQHEQHHQH
DQQQHQQQQQHQHQHQHQHQQQGRLPRQQPQASLTAGPKNLSQPILAQGR
SGAGAGGTVARNQQLSPTPRPTAMPPLQKLQPPQQQQIMIVQQQHLIQQQ
QLQEQQQQELQQQQGLFPSHASLPRQHPPRHAVQRALPPKQGSPFPPYQF
PST*
back to top
Synonyms
Publications