NO29G01530, NO29G01530 (gene) Nannochloropsis oceanica

Overview
NameNO29G01530
Unique NameNO29G01530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length744
Alignment locationchr29:482410..483153 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:482410..483153 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO29G01530 vs. NCBI_GenBank
Match: EWM21333.1 (hypothetical protein Naga_100075g22 [Nannochloropsis gaditana])

HSP 1 Score: 337.8 bits (865), Expect = 2.800e-89
Identity = 154/191 (80.63%), Postives = 177/191 (92.67%), Query Frame = 0
Query:   57 TLDSSMPWDLSVVIKKEGYADIQADLRLRFVAEPGYEPPQGRIFVERDQRALIDTDDKGFALTPSPAWTLSEDKDDRQWGLWIWGLFAEPLFPYLYMTLPVLDECLADVVGEDGEKRKEMRPVFGGTGIPGRRLDFRFNHVREDGATVLSEGKVTFKEVEMQKVDPLGIGGLVNVGDIKEAGEAQLRPVLV 248
            +L S++PWDLSVVIKKEGY+DIQAD R+RFV EPGYEPPQGRIFVERD  ALIDTD+KGFAL P+PAWTLSEDK+DRQWGLWIWGLF EPLFPYLY +LPVLD+CL + V E+GE+RKE+RPVFGGTGIPG RL+FRFNHVR+DGA  LSEG++TFKEVEM+KVDPLGIGG+VNVGD+K+AGEAQLRPVL+
Sbjct:   60 SLSSNVPWDLSVVIKKEGYSDIQADFRIRFVTEPGYEPPQGRIFVERDPLALIDTDEKGFALGPAPAWTLSEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCLTE-VDEEGERRKELRPVFGGTGIPGNRLNFRFNHVRQDGAVSLSEGQLTFKEVEMRKVDPLGIGGVVNVGDVKDAGEAQLRPVLI 249          
BLAST of NO29G01530 vs. NCBI_GenBank
Match: GAX29581.1 (hypothetical protein FisN_24Lh038 [Fistulifera solaris])

HSP 1 Score: 97.8 bits (242), Expect = 4.900e-17
Identity = 68/240 (28.33%), Postives = 110/240 (45.83%), Query Frame = 0
Query:   16 YLCIFLCTHAFVVPLTTNFRPLRTSLPAAPSSSPSTGIKKPTLDSSMPWDLSVVIKKEGYADIQAD--------LRLRFVAEPGYEPPQGRIFVERDQRALIDTDDKGFALT---PSPAWTLSEDKDDRQWGLWIWGLFAEPLFPYLYMTLPVLDECLADVVGEDGEKRKEMRPVFGGTGIPGRRLDFRFNHVREDGATVLSEGKVTFKEVEMQKVDPLGIGGLVNVGDIKEAGEAQLRP 245
            +  I +C+   +V L+T       + P +  ++       PTL  +  W++ +V++  G    Q          +  +FV + GYEPPQG +      + L +T +     T       W LSED +DR+ GLW+WGLF EPL+P+L +TL   D  L +  G D               +P  +L  + NH RE+G  +L    + ++ +E  + DPLG    V++ D    G   L+P
Sbjct:   10 FFSILICSSLLLVTLSTTISAFVVAPPRSAHTTRWLAATAPTLTEATTWNVRLVMR--GLISAQGSKLDPLLYTIETQFVEDQGYEPPQGTL------KMLSNTKNSTTTTTIPIVKSRWILSEDPNDRKDGLWVWGLFKEPLYPFLLLTLQTDDIPLPNNNGTD--------------FVPAMQLYAQINHRREEGKVILEGKDLCWRRMETVRADPLG-AATVDLYDNVVVGTIALQP 226          
BLAST of NO29G01530 vs. NCBI_GenBank
Match: XP_002506074.1 (predicted protein [Micromonas commoda] >ACO67332.1 predicted protein [Micromonas commoda])

HSP 1 Score: 94.7 bits (234), Expect = 4.200e-16
Identity = 58/161 (36.02%), Postives = 80/161 (49.69%), Query Frame = 0
Query:   82 LRLRFVAEPGYEPPQGRIFVERDQRALIDTDDKGFALTPSPAWTLSEDKDDRQWGLWIWGLFAEPLFPYLYMTLPVLDECLADVVGEDGEKRKEMRPVFGGTGIPGRRLDFRFNHVR-EDGATVLSEGKVTFKEVEMQKVDPLGIGGLVNVGDIKEAGEAQ 242
            +R RFV + GYEPPQG I +E DQ       +  F       WTL+ED ++R+ GLWIWGLF EPL+PY+ ++     +C    V E            GG  IP  +L     H R      VLS+GK++FK  +  K D +G+     +G+    G  Q
Sbjct:   82 VRARFVVDEGYEPPQGSIEIEDDQ-------ELAFVQAGFHRWTLAEDPNERKAGLWIWGLFEEPLYPYMLLSF----DCNRIEVAE------------GGYHIPKGKLFAEVKHARGSKSGHVLSDGKLSFKVTKTYKADLVGLSE-ATIGEPTMCGRLQ 218          
BLAST of NO29G01530 vs. NCBI_GenBank
Match: CBN76715.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 92.4 bits (228), Expect = 2.100e-15
Identity = 65/196 (33.16%), Postives = 91/196 (46.43%), Query Frame = 0
Query:   56 PTLDSSMPWDLSVVIKK-----EGYADIQADLRLRFVAEPGYEPPQGRIFVERDQRALIDTDDKGFALTPSPAWTLSEDKDDRQWGLWIWGLFAEPLFPYLYMTLPVLDECLADVVGEDGEKRKEMRPVFGGTGIPGRRLDFRFNHVREDG-ATVLSEGKVTFKEVEMQKVDPLGIGGLVNVGDIKEAGEAQLRPV 246
            PTL  S  W + + +K      E     +  +R+RF  E  +EPPQG + V  D      T   G A      WTLSE +D R  GLW+WGLF +PL+P+L + +  L+                  P+ GG  I   RL  + +H R+D     L  G V  K VE  +VDPLG+    ++ ++   G  Q RPV
Sbjct:   90 PTLSGSTQWRMFLSLKDPTLGGEAGDTTEVAVRVRFDEERDFEPPQGSLEVIEDNPYF--TQQAGKA-----RWTLSEAEDTRGAGLWVWGLFKDPLYPFLLLQVNNLE-----------------IPLKGGAKIAPGRLYVKVDHRRDDELGPTLKSGTVGVKIVERVRVDPLGMAE-ADITNVVPCGSVQFRPV 260          
BLAST of NO29G01530 vs. NCBI_GenBank
Match: XP_003062875.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH52814.1 predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 87.4 bits (215), Expect = 6.700e-14
Identity = 66/215 (30.70%), Postives = 97/215 (45.12%), Query Frame = 0
Query:   56 PTLDSSMPWDLSVV----IKKEGYADIQADLRLRFVAEPGYEPPQGRI-FVERDQRALIDTDDKGFAL---------------------TPSPAWTL-SEDKDDRQWGLWIWGLFAEPLFPYLYMTLPVLDECLADVVGEDGEKRKEMRPVFGGTGIPGRRLDFRFNHVR-EDGATVLSEGKVTFKEVEMQKVDPLGIGGLVNVGDIKEAGEAQL 243
            P+LD+S  W L +     +      D   D R  FV + GYEPPQG +  VE D    +D     + L                      P+P   L S+D ++R+ GLWIWGLF EPL+PY+ ++  V               R E+R   GG  +P  +L     H R      VLS+G+++FK  +  + D +G+   V+VG+  E G  +L
Sbjct:   51 PSLDASSTWRLRLELFSGVGASSEPDRVVDARCVFVVDEGYEPPQGVVQIVEDDDGVFVDGGLHRWTLEELVCDIVSSESPSSRVVAFVPPTPHSPLPSQDPNERKAGLWIWGLFEEPLYPYMLLSFDV--------------NRVEVRE--GGYHVPAGKLFGEMRHARGSKSGHVLSDGRLSFKVTKTYQADLVGL-SKVSVGEPTECGRVRL 248          
BLAST of NO29G01530 vs. NCBI_GenBank
Match: XP_005768446.1 (hypothetical protein EMIHUDRAFT_211059 [Emiliania huxleyi CCMP1516] >EOD16017.1 hypothetical protein EMIHUDRAFT_211059 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 84.7 bits (208), Expect = 4.300e-13
Identity = 53/151 (35.10%), Postives = 71/151 (47.02%), Query Frame = 0
Query:   84 LRFVAEPGYEPPQGRIFVERDQRALIDTDDKGFALTPSPA-WTLSEDKDDRQWGLWIWGLFAEPLFPYLYMTLPVLDECLADVVGEDGEKRKEMRPVFGGTGIPGRRLDFRFNHVREDGATVLSEGKVTFKEVEMQKVDPLGIGGLVNVGD 234
            +RF  E GYEPPQG++ V+          +    L   PA W+LSED +DR+  LWIWGLF++PL+P+L   L +                        G  IP   L F+ +H R+DGA  L EG VT+K      V       LV + D
Sbjct:   74 VRFAEEEGYEPPQGKLSVDS------CLPEGSLRLGEQPAQWSLSEDPEDRKDSLWIWGLFSDPLYPFLLFQLDL---------------------AAPGVCIPAGPLYFQVDHRRKDGAVQLGEGDVTYKARRTHAVSEQLQADLVGLSD 197          
BLAST of NO29G01530 vs. NCBI_GenBank
Match: EJK53411.1 (hypothetical protein THAOC_27162 [Thalassiosira oceanica])

HSP 1 Score: 81.3 bits (199), Expect = 4.800e-12
Identity = 70/253 (27.67%), Postives = 109/253 (43.08%), Query Frame = 0
Query:    7 STVARVLLAYLCIFLCTHAFVVPLTTNFRPLRTSLPAAPSS--SPSTGIKKPTLDSSMPWDLSVV---IKKEGYADIQADLRL---RFVAEPGYEPPQGRIFVERDQRALIDTD----DKGFALTPSPAWTLSEDKDDRQWGLWIWGLFAEPLFPYLYMTLPVLDECLADVVGEDGEKRKEMRPVFGGTGIPGRRLDFRFNHVR-EDGATVLSEGKVTFKEVEMQKVDPLGIGGLVNVGDIKEAGEAQLRPVL 247
            S+ +  +L  L +    HAF  P T      + S  AA +S     T   + TL     W L ++   +     A +   L +    F+ E GYEPPQG  FV  ++R+    D    D       S  W LSED DD + GLWIWGLF EPL+P++ + +      L   + E+ +             IP  +L  + NH R ED    L    +  + +E  ++     G  V++ + +  G+   +P+L
Sbjct:    2 SSPSAAILLLLALVASVHAFTAPNTA-----KRSKNAATTSLFMSETATARTTLTDETTWRLRLLLNDVTSSKGAKLDGKLFVIEGSFIEEEGYEPPQG-TFVANERRSSSGEDLSESDTTILKVKSSRWKLSEDPDDPKDGLWIWGLFKEPLYPFMLLQIETEKLTLPSGIDEEAD------------SIPPLKLFAQINHARKEDVGVELQAANLNVRILEQIQLP----GASVDLYEEEPVGQISFQPLL 232          
BLAST of NO29G01530 vs. NCBI_GenBank
Match: GAX12464.1 (hypothetical protein FisN_24Hh038 [Fistulifera solaris])

HSP 1 Score: 79.7 bits (195), Expect = 1.400e-11
Identity = 46/147 (31.29%), Postives = 73/147 (49.66%), Query Frame = 0
Query:   98 RIFVERDQRALIDTDDKGFALTPSPAWTLSEDKDDRQWGLWIWGLFAEPLFPYLYMTLPVLDECLADVVGEDGEKRKEMRPVFGGTGIPGRRLDFRFNHVREDGATVLSEGKVTFKEVEMQKVDPLGIGGLVNVGDIKEAGEAQLRP 245
            R+ +  D    I  + +   +  S  W LSED +DR+ GLW+WGLF EPL+P+L +TL   D  L +  G D               +P  +L  + NH R++G  +L    + ++++E  + DPLG    V++ D    G   L+P
Sbjct:   62 RLVMRGDIENAIKHEKQHDKINNSSRWILSEDPNDRKDGLWVWGLFKEPLYPFLLLTLQTDDIPLPNNNGTD--------------FVPAMQLYAQVNHRRDEGKVILEGKDLCWRQMETVRADPLG-AATVDLYDNVVVGTIALQP 193          
BLAST of NO29G01530 vs. NCBI_GenBank
Match: OEU07892.1 (hypothetical protein FRACYDRAFT_271884 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 78.2 bits (191), Expect = 4.000e-11
Identity = 55/202 (27.23%), Postives = 86/202 (42.57%), Query Frame = 0
Query:   57 TLDSSMPWDLSVVI--------KKEGYADIQADLRLRFVAEPGYEPPQG----------------RIFVERDQRALIDTDDKGFA---LTPSPAWTLSEDKDDRQWGLWIWGLFAEPLFPYLYMTLPVLDECLADVVGEDGEKRKEMRPVFGGTGIPGRRLDFRFNHVREDGATVLSE--GKVTFKEVEMQKVDPLGIGGLV 230
            TL     W+  + +        KK G   I A ++ +F+ EPGYEPPQG                 +    ++  ++DT            S  WTLSED +DR+  LWIWGLF EPL+P+L +   +      D +   G +   ++P          +L  + NH R +   V+ +    +  +E E  K DP G   ++
Sbjct:    3 TLTEETTWNFRMALSNLPTEKGKKAGVDGIFA-IQAKFIEEPGYEPPQGIIQQIFEVASSSEEVVEVETTPEEDGVVDTSSLPTTTQMTIKSGRWTLSEDPNDRKDSLWIWGLFKEPLYPFLLLNFEI------DRISLPGGEDDSIKPF---------QLYAQVNHKRGENGEVMLDLVSDINIREKESFKADPFGAANVL 188          
BLAST of NO29G01530 vs. NCBI_GenBank
Match: XP_002296078.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64795.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 73.9 bits (180), Expect = 7.600e-10
Identity = 45/163 (27.61%), Postives = 79/163 (48.47%), Query Frame = 0
Query:   86 FVAEPGYEPPQG--RIFVERDQRALIDTDDKGFALTPSPAWTLSEDKDDRQWGLWIWGLFAEPLFPYLYMTLPVLDECLADVVGEDGEKRKEMRPVFGGTGIPGRRLDFRFNHVR-EDGATVLSEGKVTFKEVEMQKVDPLGIGGLVNVGDIKEAGEAQLRPV 246
            F+ E GYEPPQG  R F +         D+          WTLSED +D++ GLWIWGLF EPL+P++ + +   +  L     +  + R++++       IP  +L  +  H+R E+    L    +  + +E  ++     G  V++ + +  G+   +P+
Sbjct:   62 FIEEEGYEPPQGLFRPFAKERVEGGTGKDNAMVLEVIRSRWTLSEDPNDKKDGLWIWGLFKEPLYPFMLLQIETKELELPSGTQQAQDGREDIK----SDTIPPLKLYAQVTHIRNEEVGVELKTANLNVRVLEKIQLP----GASVDLYEEERVGQVSFQPL 216          
The following BLAST results are available for this feature:
BLAST of NO29G01530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 11
Match NameE-valueIdentityDescription
EWM21333.12.800e-8980.63hypothetical protein Naga_100075g22 [Nannochlorops... [more]
GAX29581.14.900e-1728.33hypothetical protein FisN_24Lh038 [Fistulifera sol... [more]
XP_002506074.14.200e-1636.02predicted protein [Micromonas commoda] >ACO67332.1... [more]
CBN76715.12.100e-1533.16conserved unknown protein [Ectocarpus siliculosus][more]
XP_003062875.16.700e-1430.70predicted protein [Micromonas pusilla CCMP1545] >E... [more]
XP_005768446.14.300e-1335.10hypothetical protein EMIHUDRAFT_211059 [Emiliania ... [more]
EJK53411.14.800e-1227.67hypothetical protein THAOC_27162 [Thalassiosira oc... [more]
GAX12464.11.400e-1131.29hypothetical protein FisN_24Hh038 [Fistulifera sol... [more]
OEU07892.14.000e-1127.23hypothetical protein FRACYDRAFT_271884 [Fragilario... [more]
XP_002296078.17.600e-1027.61predicted protein [Thalassiosira pseudonana CCMP13... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL062nonsL062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR079ngnoR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005266NSK005266Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01530.1NO29G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601628gene_8331Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100075g22gene9071Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01530.1NO29G01530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01530 ID=NO29G01530|Name=NO29G01530|organism=Nannochloropsis oceanica|type=gene|length=744bp
ATGTTTTACACAACCACCTCTACCGTAGCTAGAGTCTTGTTGGCATACTT
ATGCATCTTCCTATGCACCCATGCCTTTGTCGTACCCCTTACCACCAACT
TCCGGCCCCTCAGAACCAGCCTCCCAGCTGCCCCCTCCTCCTCTCCCAGT
ACCGGCATCAAGAAGCCAACGCTCGATTCGAGCATGCCCTGGGACCTTTC
TGTCGTCATAAAAAAAGAGGGATACGCGGACATTCAAGCAGATCTCCGGC
TTCGATTCGTCGCAGAGCCCGGTTACGAGCCGCCGCAAGGCCGGATCTTT
GTAGAGCGGGACCAACGGGCACTTATCGACACGGATGACAAGGGTTTTGC
ACTGACTCCCTCCCCAGCATGGACTCTCAGCGAGGATAAAGACGATAGGC
AATGGGGCCTGTGGATATGGGGCCTATTCGCCGAGCCGCTGTTTCCCTAC
TTGTACATGACTCTGCCTGTGCTGGACGAGTGTTTGGCCGATGTGGTAGG
GGAGGACGGGGAGAAGAGGAAAGAAATGCGGCCAGTGTTCGGGGGGACGG
GCATTCCAGGCAGGCGGTTGGATTTTCGCTTTAACCACGTGCGGGAGGAT
GGGGCGACGGTTTTGTCGGAGGGTAAAGTAACCTTTAAGGAAGTAGAGAT
GCAGAAAGTCGACCCCTTGGGAATTGGCGGGCTTGTGAATGTAGGCGACA
TTAAGGAGGCGGGAGAGGCGCAACTACGGCCCGTTTTGGTATGA
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protein sequence of NO29G01530.1

>NO29G01530.1-protein ID=NO29G01530.1-protein|Name=NO29G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MFYTTTSTVARVLLAYLCIFLCTHAFVVPLTTNFRPLRTSLPAAPSSSPS
TGIKKPTLDSSMPWDLSVVIKKEGYADIQADLRLRFVAEPGYEPPQGRIF
VERDQRALIDTDDKGFALTPSPAWTLSEDKDDRQWGLWIWGLFAEPLFPY
LYMTLPVLDECLADVVGEDGEKRKEMRPVFGGTGIPGRRLDFRFNHVRED
GATVLSEGKVTFKEVEMQKVDPLGIGGLVNVGDIKEAGEAQLRPVLV*
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Synonyms
Publications