NO29G01530.1, NO29G01530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G01530.1
Unique NameNO29G01530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length744
Alignment locationchr29:482410..483153 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:482410..483153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO29G01530.1 vs.
Match: EWM21333.1 (hypothetical protein Naga_100075g22 [Nannochloropsis gaditana])

HSP 1 Score: 347.1 bits (889), Expect = 4.700e-92
Identity = 176/242 (72.73%), Postives = 202/242 (83.47%), Query Frame = 0 
Query:   12 VLLAYLCIFLCTHAFVVPLTTN--FRPLR-TSLPAAPS--SSPSTGI-KKPTLDSSMPWDLSVVIKKEGYADIQADLRLRFVAEPGYEPPQGRIFVERDQRALIDTDDKGFALTPSPAWTLSEDKDDRQWGLWIWGLFAEPLFPYLYMTLPVLDECLADVVGEDGEKRKEMRPVFGGTGIPGRRLDFRFNHVREDGATVLSEGKVTFKEVEMQKVDPLGIGGLVNVGDIKEAGEAQLRPVLV 248
            VLLA        HAFVV L+ +    PL  TS P  P+  S  STG  KK +L S++PWDLSVVIKKEGY+DIQAD R+RFV EPGYEPPQGRIFVERD  ALIDTD+KGFAL P+PAWTLSEDK+DRQWGLWIWGLF EPLFPYLY +LPVLD+CL + V E+GE+RKE+RPVFGGTGIPG RL+FRFNHVR+DGA  LSEG++TFKEVEM+KVDPLGIGG+VNVGD+K+AGEAQLRPVL+
Sbjct:    9 VLLALFQALTFAHAFVVRLSKSSVLAPLASTSSPPPPTTTSPSSTGASKKASLSSNVPWDLSVVIKKEGYSDIQADFRIRFVTEPGYEPPQGRIFVERDPLALIDTDEKGFALGPAPAWTLSEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCLTE-VDEEGERRKELRPVFGGTGIPGNRLNFRFNHVRQDGAVSLSEGQLTFKEVEMRKVDPLGIGGVVNVGDVKDAGEAQLRPVLI 249
The following BLAST results are available for this feature:
BLAST of NO29G01530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21333.14.700e-9272.73hypothetical protein Naga_100075g22 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G01530NO29G01530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G01530.1NO29G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G01530.1.cds1NO29G01530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G01530.1 ID=NO29G01530.1|Name=NO29G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=744bp
ATGTTTTACACAACCACCTCTACCGTAGCTAGAGTCTTGTTGGCATACTT
ATGCATCTTCCTATGCACCCATGCCTTTGTCGTACCCCTTACCACCAACT
TCCGGCCCCTCAGAACCAGCCTCCCAGCTGCCCCCTCCTCCTCTCCCAGT
ACCGGCATCAAGAAGCCAACGCTCGATTCGAGCATGCCCTGGGACCTTTC
TGTCGTCATAAAAAAAGAGGGATACGCGGACATTCAAGCAGATCTCCGGC
TTCGATTCGTCGCAGAGCCCGGTTACGAGCCGCCGCAAGGCCGGATCTTT
GTAGAGCGGGACCAACGGGCACTTATCGACACGGATGACAAGGGTTTTGC
ACTGACTCCCTCCCCAGCATGGACTCTCAGCGAGGATAAAGACGATAGGC
AATGGGGCCTGTGGATATGGGGCCTATTCGCCGAGCCGCTGTTTCCCTAC
TTGTACATGACTCTGCCTGTGCTGGACGAGTGTTTGGCCGATGTGGTAGG
GGAGGACGGGGAGAAGAGGAAAGAAATGCGGCCAGTGTTCGGGGGGACGG
GCATTCCAGGCAGGCGGTTGGATTTTCGCTTTAACCACGTGCGGGAGGAT
GGGGCGACGGTTTTGTCGGAGGGTAAAGTAACCTTTAAGGAAGTAGAGAT
GCAGAAAGTCGACCCCTTGGGAATTGGCGGGCTTGTGAATGTAGGCGACA
TTAAGGAGGCGGGAGAGGCGCAACTACGGCCCGTTTTGGTATGA
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protein sequence of NO29G01530.1

>NO29G01530.1-protein ID=NO29G01530.1-protein|Name=NO29G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MFYTTTSTVARVLLAYLCIFLCTHAFVVPLTTNFRPLRTSLPAAPSSSPS
TGIKKPTLDSSMPWDLSVVIKKEGYADIQADLRLRFVAEPGYEPPQGRIF
VERDQRALIDTDDKGFALTPSPAWTLSEDKDDRQWGLWIWGLFAEPLFPY
LYMTLPVLDECLADVVGEDGEKRKEMRPVFGGTGIPGRRLDFRFNHVRED
GATVLSEGKVTFKEVEMQKVDPLGIGGLVNVGDIKEAGEAQLRPVLV*
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mRNA from alignment at chr29:482410..483153-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G01530.1 ID=NO29G01530.1|Name=NO29G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=744bp|location=Sequence derived from alignment at chr29:482410..483153- (Nannochloropsis oceanica)
ATGTTTTACACAACCACCTCTACCGTAGCTAGAGTCTTGTTGGCATACTT
ATGCATCTTCCTATGCACCCATGCCTTTGTCGTACCCCTTACCACCAACT
TCCGGCCCCTCAGAACCAGCCTCCCAGCTGCCCCCTCCTCCTCTCCCAGT
ACCGGCATCAAGAAGCCAACGCTCGATTCGAGCATGCCCTGGGACCTTTC
TGTCGTCATAAAAAAAGAGGGATACGCGGACATTCAAGCAGATCTCCGGC
TTCGATTCGTCGCAGAGCCCGGTTACGAGCCGCCGCAAGGCCGGATCTTT
GTAGAGCGGGACCAACGGGCACTTATCGACACGGATGACAAGGGTTTTGC
ACTGACTCCCTCCCCAGCATGGACTCTCAGCGAGGATAAAGACGATAGGC
AATGGGGCCTGTGGATATGGGGCCTATTCGCCGAGCCGCTGTTTCCCTAC
TTGTACATGACTCTGCCTGTGCTGGACGAGTGTTTGGCCGATGTGGTAGG
GGAGGACGGGGAGAAGAGGAAAGAAATGCGGCCAGTGTTCGGGGGGACGG
GCATTCCAGGCAGGCGGTTGGATTTTCGCTTTAACCACGTGCGGGAGGAT
GGGGCGACGGTTTTGTCGGAGGGTAAAGTAACCTTTAAGGAAGTAGAGAT
GCAGAAAGTCGACCCCTTGGGAATTGGCGGGCTTGTGAATGTAGGCGACA
TTAAGGAGGCGGGAGAGGCGCAACTACGGCCCGTTTTGGTATGA
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Coding sequence (CDS) from alignment at chr29:482410..483153-

>NO29G01530.1 ID=NO29G01530.1|Name=NO29G01530.1|organism=Nannochloropsis oceanica|type=CDS|length=744bp|location=Sequence derived from alignment at chr29:482410..483153- (Nannochloropsis oceanica)
ATGTTTTACACAACCACCTCTACCGTAGCTAGAGTCTTGTTGGCATACTT
ATGCATCTTCCTATGCACCCATGCCTTTGTCGTACCCCTTACCACCAACT
TCCGGCCCCTCAGAACCAGCCTCCCAGCTGCCCCCTCCTCCTCTCCCAGT
ACCGGCATCAAGAAGCCAACGCTCGATTCGAGCATGCCCTGGGACCTTTC
TGTCGTCATAAAAAAAGAGGGATACGCGGACATTCAAGCAGATCTCCGGC
TTCGATTCGTCGCAGAGCCCGGTTACGAGCCGCCGCAAGGCCGGATCTTT
GTAGAGCGGGACCAACGGGCACTTATCGACACGGATGACAAGGGTTTTGC
ACTGACTCCCTCCCCAGCATGGACTCTCAGCGAGGATAAAGACGATAGGC
AATGGGGCCTGTGGATATGGGGCCTATTCGCCGAGCCGCTGTTTCCCTAC
TTGTACATGACTCTGCCTGTGCTGGACGAGTGTTTGGCCGATGTGGTAGG
GGAGGACGGGGAGAAGAGGAAAGAAATGCGGCCAGTGTTCGGGGGGACGG
GCATTCCAGGCAGGCGGTTGGATTTTCGCTTTAACCACGTGCGGGAGGAT
GGGGCGACGGTTTTGTCGGAGGGTAAAGTAACCTTTAAGGAAGTAGAGAT
GCAGAAAGTCGACCCCTTGGGAATTGGCGGGCTTGTGAATGTAGGCGACA
TTAAGGAGGCGGGAGAGGCGCAACTACGGCCCGTTTTGGTATGA
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Synonyms
Publications