NO29G00640, NO29G00640 (gene) Nannochloropsis oceanica

Overview
NameNO29G00640
Unique NameNO29G00640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1350
Alignment locationchr29:243243..244592 +

Link to JBrowse

Properties
Property NameValue
DescriptionTatA-like sec-independent protein translocator subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:243243..244592 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0008565protein transporter activity
Vocabulary: INTERPRO
TermDefinition
IPR003369TatA/B/E
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO29G00640 vs. NCBI_GenBank
Match: EWM21287.1 (TatA-like sec-independent protein translocator subunit [Nannochloropsis gaditana])

HSP 1 Score: 160.2 bits (404), Expect = 6.200e-36
Identity = 94/137 (68.61%), Postives = 109/137 (79.56%), Query Frame = 0
Query:    9 ILALLVLLFGACADAFLPS-ITRPASTTTARRLQPHTPSSASSLLVTRPQSSPLSSLQQRSRGQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKTGEEAAVKTKADLARESK 145
            +   LVL + +   AFLPS    P  T+ A RLQ    +S +SL  +RP ++  SS+Q R RGQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLK+GE+AAV+TKADLA+E+K
Sbjct:   29 VFTFLVLCWLSSVQAFLPSRAPSPLLTSGAGRLQHRITTSTASLYPSRPLTTFHSSIQHRLRGQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTKADLAKEAK 165          
BLAST of NO29G00640 vs. NCBI_GenBank
Match: XP_002181489.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC46703.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 72.4 bits (176), Expect = 1.700e-9
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 0
Query:   75 GIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKTGEEAAVKTKADLA 141
            G+FGLG PEL VIA+ A  +LGP K+ +L +  GK AGELK VP EF+KGL+ GE  A   K +++
Sbjct:    2 GLFGLGVPELAVIAIAAAFLLGPQKLAELGKDAGKIAGELKEVPAEFQKGLQEGETKAKSLKDEIS 67          
BLAST of NO29G00640 vs. NCBI_GenBank
Match: CEM31116.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 72.4 bits (176), Expect = 1.700e-9
Identity = 54/137 (39.42%), Postives = 73/137 (53.28%), Query Frame = 0
Query:    7 VSILALLVLLFGACADAFLPSITRPASTTTARRLQPHTPSSASSLLVTRPQSSPL----------SSLQQRSRGQPL----YGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKTGE 130
            + +  + +LL  A    F+P    PAS  + RR      S AS     RP  SPL            L +R+ G PL     G FGLG  E+VVI + AG++LGP+K+   AR +GK AGELK VP+EF++G+  GE
Sbjct:   10 ICVTWICLLLIAAPVRCFVP----PASVQSLRR------SGASRTPHIRPHPSPLLPPAIDAPLSDELTRRTDGSPLTVRHAGFFGLGPTEIVVIVVAAGLLLGPEKVGKFARDLGKIAGELKEVPKEFQQGISDGE 136          
BLAST of NO29G00640 vs. NCBI_GenBank
Match: OEU13217.1 (hypothetical protein FRACYDRAFT_269727 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 64.7 bits (156), Expect = 3.600e-7
Identity = 46/126 (36.51%), Postives = 67/126 (53.17%), Query Frame = 0
Query:   12 LLVLLFGACADAFLPSI-TRPASTTTARRLQPHTPSSASSLLVTRPQSSPLSSLQQRSRGQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKTGEEAAVKTK 137
            L+V      A AF PS+  +      AR +   TPSS+   +  + Q   ++ +Q         G+FGLG PE+ +I + A  +LGPDK+ +  +  GK AGELK VP+EF+ G+  GE  A K K
Sbjct:    9 LIVSAIVGSASAFAPSLPLKNGGMMAARTID--TPSSSYQPVSLQRQRKSVAQVQ-------TMGLFGLGAPEVGIILVAAAFLLGPDKLAEFGKDAGKIAGELKEVPKEFQAGMAEGEANAKKMK 125          
BLAST of NO29G00640 vs. NCBI_GenBank
Match: CBJ27354.1 (Tha4/Hcf106 protein [Ectocarpus siliculosus])

HSP 1 Score: 63.9 bits (154), Expect = 6.100e-7
Identity = 49/138 (35.51%), Postives = 71/138 (51.45%), Query Frame = 0
Query:    9 ILALLVLLFGACADAFLPSIT-RPASTTTARRLQPHTPSSASSLLVTRPQSSPLSSLQQRSR---GQP-------LYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKTGEEAAVKT 136
            +L     L    A+AF+P++  R    + A R    +P++A         S    +  Q SR   G+P         G+FGLG PE+ V   VA ++LGPDK+   A+ +GK AGELK VP+EF+ G++ GE    KT
Sbjct:    7 VLVWACALAARVAEAFVPALAGRAGIMSAAGRQASMSPAAAGRQNAFSHTSYGSPAQAQSSRWLSGRPSSGASTTTMGLFGLGAPEIAVCIAVAALILGPDKMAGFAKDMGKMAGELKDVPKEFQAGVEEGEAKTQKT 144          
The following BLAST results are available for this feature:
BLAST of NO29G00640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM21287.16.200e-3668.61TatA-like sec-independent protein translocator sub... [more]
XP_002181489.11.700e-953.03predicted protein, partial [Phaeodactylum tricornu... [more]
CEM31116.11.700e-939.42unnamed protein product [Vitrella brassicaformis C... [more]
OEU13217.13.600e-736.51hypothetical protein FRACYDRAFT_269727 [Fragilario... [more]
CBJ27354.16.100e-735.51Tha4/Hcf106 protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005176NSK005176Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00640.1NO29G00640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601241gene_8236Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100468g4gene9139Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00640.1NO29G00640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00640 ID=NO29G00640|Name=NO29G00640|organism=Nannochloropsis oceanica|type=gene|length=1350bp
ATGTCTTTCGCCCGTCGGGTCAGCATCCTGGCGCTTTTGGTCCTTTTGTT
TGGCGCGTGCGCCGATGCCTTCCTTCCTTCCATCACACGACCGGCTTCAA
CCACCACGGCAAGACGCCTGCAGCCACATACTCCCTCCTCCGCGTCCTCC
CTCCTCGTCACCCGCCCGCAATCCTCACCCTTGTCTTCCCTACAACAACG
ATCGCGCGgtacgtctctgtgtacgcgaggttcatgtctgtgtgcctcgt
ttaaggccaaggggcttgcttcctttatccgagttgaagataaccgtatg
atatgtctgtgagagtgagtgggtgtgactgccagaccctccacatgtac
cctccttttcatgaaatgggagctctcacatgacgtgagatgacacgctt
gcgtactttgaatgcttccgggttgagattcctcctccaagggacctccc
ccctcctcgagaacggagacgcatcacaaaataaaaataagttaagcacg
atctcacaccctcaccccctcctcctttccaccaaactatagGCCAGCCC
CTATACGGCATCTTCGGCCTGGGCACACCCGAGCTGGTGGTGATTGCGCT
CGTGGCAGGCATCGTGCTGgtacgcccttttccttctctccctccctccc
accctccctccctcccaccctccctccctccctccctccctccattcctt
cctcacgctttcctgaaaaagaaaacatttcaaatgtcacttatgtctat
tatgcacggtgtcgatatactgtgaatgcaccctgtcggcaaaaatgagg
agaagctactgttcctcccatcacccgatccactctcaacccaatctctc
cctccctccctccctccctccctccctcctttccttcgcagGGGCCAGAC
AAGATCGTGGACCTCGCCCGTGGGGTAGGCAAGGCGGCCGGAGAGTTGAA
GGCAGTGCCGCAGGAGTTTGAGAAGGGGTTGAAGACAGGAGAGGAGGCAG
CGGTCAAGACTAAGGCCGATCTTGCAAGGGAGTCGAAGGAAAAGGAGAGT
GCGAAGAAAGAgtaagcatgggaaaatcaaggatggggggaagaaatgag
atcatcagtggtggggtagctatgctgatgataacgtttggcatgtgacg
aggaggaggcggaggaggaaggcgacaagtgtgagggctgggggaagtgg
tcacccaagcggtactctactgcacctacaagACAACACAAAAGAAGCTG
GAACAGCAGCAGCAGCAGCGACAGCAGGAGCATCAGCAATAAGTCAGCAG
CAGCAGCAGCACCACCACCACCACCACCACCACCACCAGCAGCAGCATAA
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protein sequence of NO29G00640.1

>NO29G00640.1-protein ID=NO29G00640.1-protein|Name=NO29G00640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MSFARRVSILALLVLLFGACADAFLPSITRPASTTTARRLQPHTPSSASS
LLVTRPQSSPLSSLQQRSRGQPLYGIFGLGTPELVVIALVAGIVLGPDKI
VDLARGVGKAAGELKAVPQEFEKGLKTGEEAAVKTKADLARESKEKESAK
KEQHKRSWNSSSSSDSRSISNKSAAAAAPPPPPPPPPAAA*
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Synonyms
Publications