NO29G00640.1, NO29G00640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G00640.1
Unique NameNO29G00640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length573
Alignment locationchr29:243243..244592 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:243243..244592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO29G00640.1 vs.
Match: EWM21287.1 (TatA-like sec-independent protein translocator subunit [Nannochloropsis gaditana])

HSP 1 Score: 158.3 bits (399), Expect = 2.400e-35
Identity = 100/151 (66.23%), Postives = 116/151 (76.82%), Query Frame = 0 
Query:    9 ILALLVLLFGACADAFLPS-ITRPASTTTARRLQPHTPSSASSLLVTRPQSSPLSSLQQRSRGQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKTGEEAAVKTKADLARESKEK--ESAKKEQHKR 157
            +   LVL + +   AFLPS    P  T+ A RLQ    +S +SL  +RP ++  SS+Q R RGQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLK+GE+AAV+TKADLA+E+K K    AKKE  +R
Sbjct:   29 VFTFLVLCWLSSVQAFLPSRAPSPLLTSGAGRLQHRITTSTASLYPSRPLTTFHSSIQHRLRGQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTKADLAKEAKAKAEAGAKKEGEER 179
The following BLAST results are available for this feature:
BLAST of NO29G00640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21287.12.400e-3566.23TatA-like sec-independent protein translocator sub... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G00640NO29G00640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G00640.1NO29G00640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G00640.1.cds1NO29G00640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G00640.1.cds2NO29G00640.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G00640.1.cds3NO29G00640.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G00640.1.cds4NO29G00640.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G00640.1 ID=NO29G00640.1|Name=NO29G00640.1|organism=Nannochloropsis oceanica|type=mRNA|length=573bp
ATGTCTTTCGCCCGTCGGGTCAGCATCCTGGCGCTTTTGGTCCTTTTGTT
TGGCGCGTGCGCCGATGCCTTCCTTCCTTCCATCACACGACCGGCTTCAA
CCACCACGGCAAGACGCCTGCAGCCACATACTCCCTCCTCCGCGTCCTCC
CTCCTCGTCACCCGCCCGCAATCCTCACCCTTGTCTTCCCTACAACAACG
ATCGCGCGGCCAGCCCCTATACGGCATCTTCGGCCTGGGCACACCCGAGC
TGGTGGTGATTGCGCTCGTGGCAGGCATCGTGCTGGGGCCAGACAAGATC
GTGGACCTCGCCCGTGGGGTAGGCAAGGCGGCCGGAGAGTTGAAGGCAGT
GCCGCAGGAGTTTGAGAAGGGGTTGAAGACAGGAGAGGAGGCAGCGGTCA
AGACTAAGGCCGATCTTGCAAGGGAGTCGAAGGAAAAGGAGAGTGCGAAG
AAAGAACAACACAAAAGAAGCTGGAACAGCAGCAGCAGCAGCGACAGCAG
GAGCATCAGCAATAAGTCAGCAGCAGCAGCAGCACCACCACCACCACCAC
CACCACCACCAGCAGCAGCATAA
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protein sequence of NO29G00640.1

>NO29G00640.1-protein ID=NO29G00640.1-protein|Name=NO29G00640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MSFARRVSILALLVLLFGACADAFLPSITRPASTTTARRLQPHTPSSASS
LLVTRPQSSPLSSLQQRSRGQPLYGIFGLGTPELVVIALVAGIVLGPDKI
VDLARGVGKAAGELKAVPQEFEKGLKTGEEAAVKTKADLARESKEKESAK
KEQHKRSWNSSSSSDSRSISNKSAAAAAPPPPPPPPPAAA*
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mRNA from alignment at chr29:243243..244592+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G00640.1 ID=NO29G00640.1|Name=NO29G00640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1350bp|location=Sequence derived from alignment at chr29:243243..244592+ (Nannochloropsis oceanica)
ATGTCTTTCGCCCGTCGGGTCAGCATCCTGGCGCTTTTGGTCCTTTTGTT
TGGCGCGTGCGCCGATGCCTTCCTTCCTTCCATCACACGACCGGCTTCAA
CCACCACGGCAAGACGCCTGCAGCCACATACTCCCTCCTCCGCGTCCTCC
CTCCTCGTCACCCGCCCGCAATCCTCACCCTTGTCTTCCCTACAACAACG
ATCGCGCGGTACGTCTCTGTGTACGCGAGGTTCATGTCTGTGTGCCTCGT
TTAAGGCCAAGGGGCTTGCTTCCTTTATCCGAGTTGAAGATAACCGTATG
ATATGTCTGTGAGAGTGAGTGGGTGTGACTGCCAGACCCTCCACATGTAC
CCTCCTTTTCATGAAATGGGAGCTCTCACATGACGTGAGATGACACGCTT
GCGTACTTTGAATGCTTCCGGGTTGAGATTCCTCCTCCAAGGGACCTCCC
CCCTCCTCGAGAACGGAGACGCATCACAAAATAAAAATAAGTTAAGCACG
ATCTCACACCCTCACCCCCTCCTCCTTTCCACCAAACTATAGGCCAGCCC
CTATACGGCATCTTCGGCCTGGGCACACCCGAGCTGGTGGTGATTGCGCT
CGTGGCAGGCATCGTGCTGGTACGCCCTTTTCCTTCTCTCCCTCCCTCCC
ACCCTCCCTCCCTCCCACCCTCCCTCCCTCCCTCCCTCCCTCCATTCCTT
CCTCACGCTTTCCTGAAAAAGAAAACATTTCAAATGTCACTTATGTCTAT
TATGCACGGTGTCGATATACTGTGAATGCACCCTGTCGGCAAAAATGAGG
AGAAGCTACTGTTCCTCCCATCACCCGATCCACTCTCAACCCAATCTCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTCCTTCGCAGGGGCCAGAC
AAGATCGTGGACCTCGCCCGTGGGGTAGGCAAGGCGGCCGGAGAGTTGAA
GGCAGTGCCGCAGGAGTTTGAGAAGGGGTTGAAGACAGGAGAGGAGGCAG
CGGTCAAGACTAAGGCCGATCTTGCAAGGGAGTCGAAGGAAAAGGAGAGT
GCGAAGAAAGAGTAAGCATGGGAAAATCAAGGATGGGGGGAAGAAATGAG
ATCATCAGTGGTGGGGTAGCTATGCTGATGATAACGTTTGGCATGTGACG
AGGAGGAGGCGGAGGAGGAAGGCGACAAGTGTGAGGGCTGGGGGAAGTGG
TCACCCAAGCGGTACTCTACTGCACCTACAAGACAACACAAAAGAAGCTG
GAACAGCAGCAGCAGCAGCGACAGCAGGAGCATCAGCAATAAGTCAGCAG
CAGCAGCAGCACCACCACCACCACCACCACCACCACCAGCAGCAGCATAA
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Coding sequence (CDS) from alignment at chr29:243243..244592+

>NO29G00640.1 ID=NO29G00640.1|Name=NO29G00640.1|organism=Nannochloropsis oceanica|type=CDS|length=573bp|location=Sequence derived from alignment at chr29:243243..244592+ (Nannochloropsis oceanica)
ATGTCTTTCGCCCGTCGGGTCAGCATCCTGGCGCTTTTGGTCCTTTTGTT
TGGCGCGTGCGCCGATGCCTTCCTTCCTTCCATCACACGACCGGCTTCAA
CCACCACGGCAAGACGCCTGCAGCCACATACTCCCTCCTCCGCGTCCTCC
CTCCTCGTCACCCGCCCGCAATCCTCACCCTTGTCTTCCCTACAACAACG
ATCGCGCGGCCAGCCCCTATACGGCATCTTCGGCCTGGGCACACCCGAGC
TGGTGGTGATTGCGCTCGTGGCAGGCATCGTGCTGGGGCCAGACAAGATC
GTGGACCTCGCCCGTGGGGTAGGCAAGGCGGCCGGAGAGTTGAAGGCAGT
GCCGCAGGAGTTTGAGAAGGGGTTGAAGACAGGAGAGGAGGCAGCGGTCA
AGACTAAGGCCGATCTTGCAAGGGAGTCGAAGGAAAAGGAGAGTGCGAAG
AAAGAACAACACAAAAGAAGCTGGAACAGCAGCAGCAGCAGCGACAGCAG
GAGCATCAGCAATAAGTCAGCAGCAGCAGCAGCACCACCACCACCACCAC
CACCACCACCAGCAGCAGCATAA
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Synonyms
Publications