NO27G01420, NO27G01420 (gene) Nannochloropsis oceanica

Overview
NameNO27G01420
Unique NameNO27G01420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5351
Alignment locationchr27:461649..466999 +

Link to JBrowse

Properties
Property NameValue
DescriptionOmp85
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:461649..466999 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO27G01420 vs. NCBI_GenBank
Match: GAX25120.1 (hypothetical protein FisN_10Lh317 [Fistulifera solaris])

HSP 1 Score: 73.2 bits (178), Expect = 4.300e-9
Identity = 54/179 (30.17%), Postives = 82/179 (45.81%), Query Frame = 0 
Query:  389 GRTQAKVIAQALGLKRGAVFRLDRDKYRRLERLGPFDRAWLSLVNADRGEEELGVELIVHERPSRSFEPGLSKSLHTRGWTGDIYLEDKNLLGMNQAMVVKLCKGLVQHRREPCITMSAEFRDNALKSGVHRSFSLYRDPVGEAIIREGGSARFHLPWLGPIRSGLEFTADRLLRASSS 568
            GRT+ + IA ALGL  G  FR +  +++++   G F R   +    D     + ++++VHE P R  E GLSKSL+T  W G++  E  NLLG  +++      GL   R     +    F D+           L+ D +GE   ++   A+  L  L    S L   +  L  A SS
Sbjct:  244 GRTRPRRIAAALGLAPGEHFRWNESRWKKIVGSGIFKRVLQAAPKTD-DNGTVQLQMLVHEAPPRHLEYGLSKSLYTGDWEGELDFEHANLLGGGESL------GLTFRRGTKGPSGRLRFSDDRFGLEGGYDVELFSDYIGE---KDENDAKTSLKPLDVQESRLNEESTPLAEAKSS 412
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BLAST of NO27G01420 vs. NCBI_GenBank
Match: XP_005703263.1 (outer membrane protein (plastid) [Galdieria sulphuraria] >EME26743.1 outer membrane protein [Galdieria sulphuraria])

HSP 1 Score: 72.8 bits (177), Expect = 5.600e-9
Identity = 55/164 (33.54%), Postives = 81/164 (49.39%), Query Frame = 0 
Query:  366 KPEGALLRLPAMQKGEPPLVVCKGRTQAKVIAQALGLKRGAVFRLDRDKYRRLERLGPFD--RAWLSLVNADRGEEELGVELIVHERPSRSFEPGLSKSLHTRGWTGDIYLEDKNLLGMNQAMVVKLCKGLVQHRREPCITMSAEFRDNALKSGVHRSFSLYRD 528
            +P  A +RL  +     P    KGRT++  I +A+G++RG VFR     + R+  LG FD  RA L L    R ++ + V L V ERP   FEPG+     +  + G++  +D NL G NQ +  +L K   QH       +S E+ D  +       F +YRD
Sbjct:  208 EPRFAGIRLVYLDDNREP--CNKGRTKSDTIEKAVGIQRGQVFRWSDRYWERITELGLFDYVRAELEL----RDDQSVMVILRVRERPYSRFEPGIGYG--SGEFFGELSFQDNNLFGRNQFLQFELQKRQSQHS-----LLSLEWEDPRVGQWFGYRFKVYRD 358
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BLAST of NO27G01420 vs. NCBI_GenBank
Match: CBN74593.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 72.4 bits (176), Expect = 7.300e-9
Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = 0 
Query:  388 KGRTQAKVIAQALGLKRGAVFRLDRDKYRRLERLGPFDRAWLSLVNADRGEEELGVELIVHERPSRSFEPGLSKSLHTRGWTGDIYLEDKNLLGMNQAMVVKLCKGLVQHRREPCITMSAEFRDNALKSGVHR 521
            KG+ +     + LGLK G  F+LD  ++R +   G F    LS  + +  ++ + +++ V ER S  F PG++K+L    W G+I  E+KN+LG N  M +KL      HR     +MS+ F   +L+ G +R
Sbjct:  143 KGKIKVSPFPKGLGLKGGDHFKLDAQRWRGVLGSGLFSGVQLSGAHQNAEDKGMTLDINVEERNSVVFAPGVTKTLFDSNWAGEISFEEKNVLGRNGVMGLKL------HR-----SMSSPFTSFSLRMGNNR 264
[Close]
BLAST of NO27G01420 vs. NCBI_GenBank
Match: GAX21195.1 (hypothetical protein FisN_10Hh317 [Fistulifera solaris])

HSP 1 Score: 69.3 bits (168), Expect = 6.100e-8
Identity = 40/106 (37.74%), Postives = 60/106 (56.60%), Query Frame = 0 
Query:  389 GRTQAKVIAQALGLKRGAVFRLDRDKYRRLERLGPFDRAWLSL-VNADRGEEELGVELIVHERPSRSFEPGLSKSLHTRGWTGDIYLEDKNLLGMNQAMVVKLCKG 494
            GRT+ + IA ALGL  G  FR +  +++++   G F R   +     D G  +L  +++VHE P R  E GLSKSL+T  W G++  E  NLLG  +++   L +G
Sbjct:  304 GRTRPRRIAAALGLAPGEHFRWNESRWKKIVGSGIFKRVLQAAPKTVDNGTVQL--QMLVHEAPPRHLEYGLSKSLYTGDWEGELDFEHANLLGGGESLGFTLRRG 407
The following BLAST results are available for this feature:
BLAST of NO27G01420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
GAX25120.14.300e-930.17hypothetical protein FisN_10Lh317 [Fistulifera sol... [more]
XP_005703263.15.600e-933.54outer membrane protein (plastid) [Galdieria sulphu... [more]
CBN74593.17.300e-933.08conserved unknown protein [Ectocarpus siliculosus][more]
GAX21195.16.100e-837.74hypothetical protein FisN_10Hh317 [Fistulifera sol... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR061ncniR061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01420.1NO27G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|306625gene_9936Nannochloropsis oceanica (N. oceanica CCMP1779)gene
jgi.p|Nanoce1779_2|673655gene_8735Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01420.1NO27G01420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01420 ID=NO27G01420|Name=NO27G01420|organism=Nannochloropsis oceanica|type=gene|length=5351bp
ATGCCAGCGCATCAGACGACTATCTGTGGTAGTGCGCTTGCTTGGGATGG
CATGGTCAGgtcagggccatcactcaattattgtcgcatccgtctgttgc
aaatgttggcgttgcggcgaagactcgacgggctcttgcttctctctgct
ccccttaagaacgcctctgctcccgacgccggtaaaaaagacttgcacgt
tcatcttatattccacccccactgtctctcgcatcccatacagaccttac
agctgttttagcggccgagccatcgtccgctcgagcaagaggcaaggccg
tcctatcagcccgccctccctccccccctcgactcctcgatgccgcctac
ttcacgttcctccttcctcgccctccccgtcctcctcgtcctccttctct
ccatctccctccttcccctagTCAATTCATTCTCCTCGCTCAAGCTGCCG
TCATCACCCTTATCCTCTGCTCCAACGGCAACAGCTGCTGCTTCTGCTGC
ACGCCCCACCATTTCCTCCCCCTCTCCCACCTCCTCGTCCACCTGCTATT
CCTCCTGTTCATCATCATCACTATCATCCACCACCCTTCTCGGCACAAGC
CACGGCAGCGGCTTCGGCAACAATGGTGGATTCACTCCCCCCCCTCCTCC
TCCTCCTCCCCCTCCAACTCCTGGTCCTCCTGGTGGTGGGGTGACGGAGA
CGAGGGCAACAACAACGGAGAAAATAAAGAGGGGGGAACCTGGGATCAAG
TTGCTATGGTGGCTCTTGGTGCTGCCGCTGTTGCTGCTCCTGCAGGAGCG
GGAGGAGTCGCTCTTTCCACCTCTCTCAGTCACCCTGTCCACGCCCTGAT
GAAACCGGCCGGAGGAGTGGGAGGGAGGGAGGGAGGGAGGGAGGGCGGGC
GGGCGGCGTTCATGACGAGAAACTGGCCGCCGCGATGCCTGGAGATATTG
GCGCCGAATTCGACGGTTTTGGATCAGGAGGCGCTTGATCATGTCATCCA
Ggtaggggaggagggagggcgcgaagaagagaggggaagggtggctttga
cggtgcctgagtacagatcgattacgccgatcaggtacagcgccccctcc
cgctggaacttcttctcatctctcttttcttctctccctccctctctccc
tccctccccctctccttcgaacccgcagGCCCTAGGCATCTGGGGCGTGC
GGCTGGACAAAGGCAAGCTCCGCAACGTCATCCAGGCCATCGACCAATAC
TACGCCgtcagtcctgccccccccccccccccccccttccctcctcctcc
ctctccctctcaacgctttcgactcacaccctcttatcccccctccctcc
ctccctttcagCAACGGGGATTCATTGGCTCGCGCGTGAGGACTGCCTAC
GCCCACGACAATGGAAGgtacgctccctccctccctcccacctggtactg
tacgtgctcaccctccttccctccctccctgcctcccccctccctccctc
attcttgcagCGTCATTCTGGACGTGATTGAACGCCGGGTGAGCGCCACG
CCCGTCGTCCTCACTTTCGTCAAGCCCTGGGAGAAGGACAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAACAATAACGGTCTGTCTGCACGGA
TCGAAAACGGACGTGCGAAGGCCACCCTCCCTCCCTCCCTCCCTCCCTCC
TCGCCTACTAAGGGAGAAGGAGCAGGAGGGAAAGGAGGAGGGATGCCAGG
TATCCTAGCACCGACGGCATCCACCCCGACCTCCTCCACCTCCTTGTCCC
CAGCAGCGGCCGCATGGGCCGCCGGTCGCGCTAAGCCCGAGGGGGCCTTG
CTCCGACTGCCGGCGATGCAGAAGGgtgagggagggagggagggagggag
gaaggaagggagggagggagggagggaacaaaagatgtgttcttcattct
ttacgagcttcctgctctcctctcttccttctgtcactccaatcaatcaa
ctcgctcactcaactcgcccatccaatcgattaaatggctcactgtgcat
ccaatagattaaatggctcactgtgcactcctatttacagGTGAGCCCCC
TCTGGTGGTGTGCAAGGGACGCACGCAAGCCAAGGTCATCGCCCAAGCCC
TCGGACTCAAgtacgcccctccctccctccctccctccctccctccctcc
tccctcttccttcccccacctcatttacccttccaccatccctccctccc
ttcctccctccctccccctccctccctccccctccctccccaccctcttc
ccgcctttccctagGAGAGGGGCTGTCTTCCGCCTGGATCGGGACAAGTA
CCGCCGCCTCGAGCGCTTGGGGCCCTTCGACCGCGCCTGGCTCTCCCTCG
TGAACGCCGACAGGGGCGAGGAGGAGgtacagcatcgccctccttccctc
ccctcttctctccccccctccctccttccctccctccttccctgcttcct
ttcctcctcctttctagcgtagactcactttcctccctccctccctccct
cctccttttccttttccagCTGGGTGTGGAGCTGATCGTGCACGAGCGGC
CATCCCGCTCCTTCGAGCCCGGCCTGAGCAAGAGCCTGCACACGCGCGGG
TGGACGGGCGATATCTACCTGGAGGACAAGAATCTCCTGGGGATGAACCA
Ggtagggagggagggagggagggagggagggagggagggatggcttgctt
tgtccagagacctccctgcgtactctcgtcctctcgtgctctctgcgtgc
tctaacgactctcttccctccccctccacctggccagGCCATGGTCGTGA
AGCTCTGCAAGGGACTCGTCCAGCACCGTCGGGAGCCCTGTATCACTATG
TCAGgtatctgccctccctccctcccttcttccttcctctccttcctccc
cgtcgtgtccaactcgtcaactccgtccacatccccatgtcactcctgtt
catgtcactcaatccgccctcctgccctccccccctccctccagCCGAAT
TCCGCGACAACGCCCTCAAGTCCGGCGTCCATCGGTCCTTCTCCCTCTAT
CGCGACCCTGTGGGAGAAGCCATTATCCGGGAGGGCGGCTCGGCTCGCTT
TCACCTCCCTTGGCTGGgtgagggaaacacagaagggggaagggagggag
gaaggttcgcaggagacggtcggctgtgaactccggcccgatgcggatag
gactaacggagggaggaagggagggagggagggagggcgatgctcagagc
tttgtgctaatcaaatggagatcttcctacctcccggcctccctccctcc
ctccctagGCCCTATCCGCAGCGGGTTGGAGTTCACTGCTGACCGTCTCC
TGCGAGCCTCCTCGTCCATCTCGGACAAGGACCGCCTGGGAAAAGGGCAG
GACAGCAGCAGCAGCAGCAGCGGTTCAGTATTTGCCATGGGCGGAGgtgc
gctgtgtgccctctccctccctcccgccctccctttcaccctccctccat
cccctccctccaacccgccctccatcccgccctctctttcctcctccctt
ccttctggatccagtccgcccgaggacttggagtcatctgtctgtacatc
ttaccctcctatccattcctccctccctccctccttccagGTGGGGCCAC
TGCCACGGTCACGGCCTTGTCGACGGACGTGGGCCTCGGCCTCGGCCTTT
GGGGGGGACGGCAGgtacgccctccctccctccctttctccctccctccc
tctcgccgagcatgtcttgacccatcacctcctccttctcccccgctaac
tccccccctccctcccagGACGCTGAGCTCTCCTTTTCCTCGGGCCTGGC
ATTCGTCCACGATCCCCGCCTCCCCTCCCCTCCCTCCCTCCACCTCGACC
ACGGTCAGGCCTTCCAAAGGATGCAGGCAGTCACCACCTGGCAGCATCCG
CTCCCCCTCGGCCTCATCCTCGGCTCCCGCAGCCTCGCCTACTGGgtatg
tgccctccctccctccctccctcccttgcctcgtcgccgtgcgtgtctgc
ctcgtcgagcccctcgagtccgaatgactcccatcacccaacaaccacca
tcctccaaaattcttccctccctccctccctccctccctccctccctccc
tccctccctccctccctcccaccagGCCTCCCGGGCCATACCCCCCTACC
TGGCCTACCGCATGGGGGGGCACCGCTTCTACGTCCGCGGCTACGACGAC
AATGACTTCGCGCCATTTTCCTCACTGCAGGGAACCACCCTGGAAGTGCG
CTTGCCCCTAATGCTGACGGCTTCAGgtacgtatcctcgcctccccttcc
ttccttccttcctttccccccaccttccttccttcttcccgatgtccctt
ctgctcacctttgcctccttccctccctccctccctcactcctttctccc
ttccttccctccttctccagGCACGCGCATCGGCCTCTCGGCCTCAGCAT
TCGTCGATTACGCGACCGGAGCCTCCCTCCCTGCCTCCTCCTCGTCTTCC
GCCCCTTCCTCCTCCTCCGCCGTGCCCTCTCTCTTGTCTCAGTACATGGC
CAAGGGGGAGGAGTTCGTCGCGGGAGGGCTGGGGTTGAAGGCCGGACCCA
TCAAAATCGATTGGGCCGTGAACAAGAGGGGGGAGGGAAAGGTACACGTC
TCCCTCGCGGATCCCTCCTTTTAAAAAGTCTTGCGACTCCCTCCCTTTTT
TGGCCTCCTTCTTTCCCTCTCCCCCTCCCTCCCTCCCTCGTGTGCGGGAA
GGTGGAGGCGAAGGAGGAGTGGGAAGAGAATTTAGGGTGGGATGGAGGGA
TGAAAAGAGGCAGGGATGGAAGGAGAGAAAGTCAGGTTGTACATAGGGGG
GGGAAAGAGCCCTGTATGGTGTTCCTTCCTCCTTCCCTCCCTCCTATCTT
TGTTGCTCGATGAGAAGAGGCAGGTCGGCAAGGGGGGGGGAGGGAGGGAG
GGGGCAAAGGAGCGGGACGGGACGGTGGATGTATGTATCTAATTTTTAAA
AAAGGACGTCGTCAGTGTACACTCAGTGAAGGGTATTGTAGAAAGTGAGG
GAGGGACGGAGGGAGGGAGGGAGGGAGGGGTGGAAGGAAGTAGACGAGGT
GATCGAGTGAGCCTCCCTTTATTCGCGATCTAAGGCTCTGGGGAGGAAAT
ATATGACCAGAAGACAAAACGGGAGGGGTGACGACGGATAGGAAGGGAAG
AGCACTCAGAATAACAGTAAGAGAATGAATCGATTCTACGCGTGTTTGGG
A
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protein sequence of NO27G01420.1

>NO27G01420.1-protein ID=NO27G01420.1-protein|Name=NO27G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=812bp
MPAHQTTICGSALAWDGMVSQFILLAQAAVITLILCSNGNSCCFCCTPHH
FLPLSHLLVHLLFLLFIIITIIHHPSRHKPRQRLRQQWWIHSPPSSSSSP
SNSWSSWWWGDGDEGNNNGENKEGGTWDQVAMVALGAAAVAAPAGAGGVA
LSTSLSHPVHALMKPAGGVGGREGGREGGRAAFMTRNWPPRCLEILAPNS
TVLDQEALDHVIQALGIWGVRLDKGKLRNVIQAIDQYYAQRGFIGSRVRT
AYAHDNGSVILDVIERRVSATPVVLTFVKPWEKDSSSSSSSSSSSSNNNG
LSARIENGRAKATLPPSLPPSSPTKGEGAGGKGGGMPGILAPTASTPTSS
TSLSPAAAAWAAGRAKPEGALLRLPAMQKGEPPLVVCKGRTQAKVIAQAL
GLKRGAVFRLDRDKYRRLERLGPFDRAWLSLVNADRGEEELGVELIVHER
PSRSFEPGLSKSLHTRGWTGDIYLEDKNLLGMNQAMVVKLCKGLVQHRRE
PCITMSAEFRDNALKSGVHRSFSLYRDPVGEAIIREGGSARFHLPWLGPI
RSGLEFTADRLLRASSSISDKDRLGKGQDSSSSSSGSVFAMGGGGATATV
TALSTDVGLGLGLWGGRQDAELSFSSGLAFVHDPRLPSPPSLHLDHGQAF
QRMQAVTTWQHPLPLGLILGSRSLAYWASRAIPPYLAYRMGGHRFYVRGY
DDNDFAPFSSLQGTTLEVRLPLMLTASGTRIGLSASAFVDYATGASLPAS
SSSSAPSSSSAVPSLLSQYMAKGEEFVAGGLGLKAGPIKIDWAVNKRGEG
KVHVSLADPSF*
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Synonyms
Publications