NO27G00920, NO27G00920 (gene) Nannochloropsis oceanica

Overview
NameNO27G00920
Unique NameNO27G00920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3911
Alignment locationchr27:310523..314433 -

Link to JBrowse

Properties
Property NameValue
DescriptionGlyceraldehyde-3-phosphate dehydrogenase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:310523..314433 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0009056catabolic process
GO:0006139nucleobase-containing compound metabolic process
GO:0006091generation of precursor metabolites and energy
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016620oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR036291NAD(P)-bd_dom_sf
IPR020829GlycerAld_3-P_DH_cat
IPR020828GlycerAld_3-P_DH_NAD(P)-bd
IPR020831GlycerAld/Erythrose_P_DH
Homology
[Close]
BLAST of NO27G00920 vs. NCBI_GenBank
Match: EWM20997.1 (glyceraldehyde 3-phosphate [Nannochloropsis gaditana])

HSP 1 Score: 637.9 bits (1644), Expect = 1.800e-179
Identity = 313/342 (91.52%), Postives = 328/342 (95.91%), Query Frame = 0 
Query:    1 MADTRVRIGINGFGRIGRLVCRAAVQNPKTVVTAINDPFMDVEYMVYQFKYDSVHGRFNGTVEAKDGNLVINGEVIKVYKAKDPAEIGWGEAGADYVCESTGVFTSTEKGGSHLKGGAKKVIISAPPKDSTPMFVMGVNHTDYKAGTDVVSNASCTTNCLAPVAKVLNDNFGIVEGLMTTVHAMTANQLTVDGPSKGGKDWRAGRCAGYNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTADVSVVDLTVKLAKETSLDEIKKLIKAASEGSMKGVLGYTEEDVVSCDFITDSRSSIFDAGACIGLSPTFFKLVSWYDNEWGYSNRLVDLIVHMSTVDNK 343
            MAD+RVRIGINGFGRIGRLVCRAAV+NPKTVV AINDPFMDVEYMVYQFKYDSVHGRF+GTVEAKDGNLVINGEV+KVYKAKDP+EIGWGEAGADYVCESTGVFT+TEK GSHLKGG+KKVIISAPPKD TPMFVMGVNHT+YK   DVVSNASCTTNCLAP+AKV+NDNFGIVEGLMTTVHAMTANQLTVDGPSKGGKDWRAGR AG N+IPASTGAAKAVGKVIPELNGKLTGMAFRVPTADVSVVDLTVK+AKETSLD IK LIK ASEGSMKGVLGYTEEDVVS DF+TD RSSIFDAGACIGL+ TFFKLVSWYDNEWGYSNRLVDLIVHMSTVD+K
Sbjct:    1 MADSRVRIGINGFGRIGRLVCRAAVKNPKTVVKAINDPFMDVEYMVYQFKYDSVHGRFDGTVEAKDGNLVINGEVVKVYKAKDPSEIGWGEAGADYVCESTGVFTTTEKAGSHLKGGSKKVIISAPPKDGTPMFVMGVNHTNYKPDMDVVSNASCTTNCLAPLAKVVNDNFGIVEGLMTTVHAMTANQLTVDGPSKGGKDWRAGRSAGVNVIPASTGAAKAVGKVIPELNGKLTGMAFRVPTADVSVVDLTVKVAKETSLDAIKALIKEASEGSMKGVLGYTEEDVVSQDFVTDCRSSIFDAGACIGLNSTFFKLVSWYDNEWGYSNRLVDLIVHMSTVDSK 342
[Close]
BLAST of NO27G00920 vs. NCBI_GenBank
Match: CCI40112.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 547.0 bits (1408), Expect = 4.200e-152
Identity = 258/341 (75.66%), Postives = 296/341 (86.80%), Query Frame = 0 
Query:    1 MADTRVRIGINGFGRIGRLVCRAAVQNPKTVVTAINDPFMDVEYMVYQFKYDSVHGRFNGTVEAKDGNLVINGEVIKVYKAKDPAEIGWGEAGADYVCESTGVFTSTEKGGSHLKGGAKKVIISAPPKDSTPMFVMGVNHTDYKAGTDVVSNASCTTNCLAPVAKVLNDNFGIVEGLMTTVHAMTANQLTVDGPSKGGKDWRAGRCAGYNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTADVSVVDLTVKLAKETSLDEIKKLIKAASEGSMKGVLGYTEEDVVSCDFITDSRSSIFDAGACIGLSPTFFKLVSWYDNEWGYSNRLVDLIVHMSTVDN 342
            M+D +V IGINGFGRIGRLVCRAA++NPKT V A+NDPFMD+EYM Y F+YDS HG++ GTVE+KDG LVI+G  I+VY AK+PAEI WG AGADYVCESTGVFT++EK  +H+KGG KKV+ISAPPKDSTPMFVMGVNH +Y     VVSNASCTTNCLAP+AKV+NDNFGIVEGLMTTVH++TANQL VDGPSKGGKDWRAGR  G NIIPASTGAAKAVGKV+PELNGKLTGMAFRVPT +VSVVDLTV+L K  S++ IK  +K ASE  +KG+LGYTE++VVS DFI D RSS+FDA ACI L+  F KL+SWYDNEWGYSNRLVDL+VHMS+VDN
Sbjct:   79 MSDKQVAIGINGFGRIGRLVCRAAIENPKTKVVAVNDPFMDLEYMAYLFRYDSTHGQYKGTVESKDGKLVIDGNAIQVYSAKNPAEIAWGSAGADYVCESTGVFTTSEKASAHIKGGCKKVVISAPPKDSTPMFVMGVNHKNYDGSVQVVSNASCTTNCLAPLAKVINDNFGIVEGLMTTVHSVTANQLPVDGPSKGGKDWRAGRGCGQNIIPASTGAAKAVGKVLPELNGKLTGMAFRVPTVNVSVVDLTVRLQKGASMEAIKSAVKKASENELKGILGYTEDEVVSSDFIHDKRSSVFDANACISLNDNFVKLISWYDNEWGYSNRLVDLMVHMSSVDN 419
[Close]
BLAST of NO27G00920 vs. NCBI_GenBank
Match: CCI40113.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 547.0 bits (1408), Expect = 4.200e-152
Identity = 258/341 (75.66%), Postives = 296/341 (86.80%), Query Frame = 0 
Query:    1 MADTRVRIGINGFGRIGRLVCRAAVQNPKTVVTAINDPFMDVEYMVYQFKYDSVHGRFNGTVEAKDGNLVINGEVIKVYKAKDPAEIGWGEAGADYVCESTGVFTSTEKGGSHLKGGAKKVIISAPPKDSTPMFVMGVNHTDYKAGTDVVSNASCTTNCLAPVAKVLNDNFGIVEGLMTTVHAMTANQLTVDGPSKGGKDWRAGRCAGYNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTADVSVVDLTVKLAKETSLDEIKKLIKAASEGSMKGVLGYTEEDVVSCDFITDSRSSIFDAGACIGLSPTFFKLVSWYDNEWGYSNRLVDLIVHMSTVDN 342
            M+D +V IGINGFGRIGRLVCRAA++NPKT V A+NDPFMD+EYM Y F+YDS HG++ GTVE+KDG LVI+G  I+VY AK+PAEI WG AGADYVCESTGVFT++EK  +H+KGG KKV+ISAPPKDSTPMFVMGVNH +Y     VVSNASCTTNCLAP+AKV+NDNFGIVEGLMTTVH++TANQL VDGPSKGGKDWRAGR  G NIIPASTGAAKAVGKV+PELNGKLTGMAFRVPT +VSVVDLTV+L K  S++ IK  +K ASE  +KG+LGYTE++VVS DFI D RSS+FDA ACI L+  F KL+SWYDNEWGYSNRLVDL+VHMS+VDN
Sbjct:  102 MSDKQVAIGINGFGRIGRLVCRAAIENPKTKVVAVNDPFMDLEYMAYLFRYDSTHGQYKGTVESKDGKLVIDGNAIQVYSAKNPAEIAWGSAGADYVCESTGVFTTSEKASAHIKGGCKKVVISAPPKDSTPMFVMGVNHKNYDGSVQVVSNASCTTNCLAPLAKVINDNFGIVEGLMTTVHSVTANQLPVDGPSKGGKDWRAGRGCGQNIIPASTGAAKAVGKVLPELNGKLTGMAFRVPTVNVSVVDLTVRLQKGASMEAIKSAVKKASENELKGILGYTEDEVVSSDFIHDKRSSVFDANACISLNDNFVKLISWYDNEWGYSNRLVDLMVHMSSVDN 442
[Close]
BLAST of NO27G00920 vs. NCBI_GenBank
Match: CCI40114.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 547.0 bits (1408), Expect = 4.200e-152
Identity = 258/341 (75.66%), Postives = 296/341 (86.80%), Query Frame = 0 
Query:    1 MADTRVRIGINGFGRIGRLVCRAAVQNPKTVVTAINDPFMDVEYMVYQFKYDSVHGRFNGTVEAKDGNLVINGEVIKVYKAKDPAEIGWGEAGADYVCESTGVFTSTEKGGSHLKGGAKKVIISAPPKDSTPMFVMGVNHTDYKAGTDVVSNASCTTNCLAPVAKVLNDNFGIVEGLMTTVHAMTANQLTVDGPSKGGKDWRAGRCAGYNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTADVSVVDLTVKLAKETSLDEIKKLIKAASEGSMKGVLGYTEEDVVSCDFITDSRSSIFDAGACIGLSPTFFKLVSWYDNEWGYSNRLVDLIVHMSTVDN 342
            M+D +V IGINGFGRIGRLVCRAA++NPKT V A+NDPFMD+EYM Y F+YDS HG++ GTVE+KDG LVI+G  I+VY AK+PAEI WG AGADYVCESTGVFT++EK  +H+KGG KKV+ISAPPKDSTPMFVMGVNH +Y     VVSNASCTTNCLAP+AKV+NDNFGIVEGLMTTVH++TANQL VDGPSKGGKDWRAGR  G NIIPASTGAAKAVGKV+PELNGKLTGMAFRVPT +VSVVDLTV+L K  S++ IK  +K ASE  +KG+LGYTE++VVS DFI D RSS+FDA ACI L+  F KL+SWYDNEWGYSNRLVDL+VHMS+VDN
Sbjct:   85 MSDKQVAIGINGFGRIGRLVCRAAIENPKTKVVAVNDPFMDLEYMAYLFRYDSTHGQYKGTVESKDGKLVIDGNAIQVYSAKNPAEIAWGSAGADYVCESTGVFTTSEKASAHIKGGCKKVVISAPPKDSTPMFVMGVNHKNYDGSVQVVSNASCTTNCLAPLAKVINDNFGIVEGLMTTVHSVTANQLPVDGPSKGGKDWRAGRGCGQNIIPASTGAAKAVGKVLPELNGKLTGMAFRVPTVNVSVVDLTVRLQKGASMEAIKSAVKKASENELKGILGYTEDEVVSSDFIHDKRSSVFDANACISLNDNFVKLISWYDNEWGYSNRLVDLMVHMSSVDN 425
[Close]
BLAST of NO27G00920 vs. NCBI_GenBank
Match: CCI40115.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 547.0 bits (1408), Expect = 4.200e-152
Identity = 258/341 (75.66%), Postives = 296/341 (86.80%), Query Frame = 0 
Query:    1 MADTRVRIGINGFGRIGRLVCRAAVQNPKTVVTAINDPFMDVEYMVYQFKYDSVHGRFNGTVEAKDGNLVINGEVIKVYKAKDPAEIGWGEAGADYVCESTGVFTSTEKGGSHLKGGAKKVIISAPPKDSTPMFVMGVNHTDYKAGTDVVSNASCTTNCLAPVAKVLNDNFGIVEGLMTTVHAMTANQLTVDGPSKGGKDWRAGRCAGYNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTADVSVVDLTVKLAKETSLDEIKKLIKAASEGSMKGVLGYTEEDVVSCDFITDSRSSIFDAGACIGLSPTFFKLVSWYDNEWGYSNRLVDLIVHMSTVDN 342
            M+D +V IGINGFGRIGRLVCRAA++NPKT V A+NDPFMD+EYM Y F+YDS HG++ GTVE+KDG LVI+G  I+VY AK+PAEI WG AGADYVCESTGVFT++EK  +H+KGG KKV+ISAPPKDSTPMFVMGVNH +Y     VVSNASCTTNCLAP+AKV+NDNFGIVEGLMTTVH++TANQL VDGPSKGGKDWRAGR  G NIIPASTGAAKAVGKV+PELNGKLTGMAFRVPT +VSVVDLTV+L K  S++ IK  +K ASE  +KG+LGYTE++VVS DFI D RSS+FDA ACI L+  F KL+SWYDNEWGYSNRLVDL+VHMS+VDN
Sbjct:   96 MSDKQVAIGINGFGRIGRLVCRAAIENPKTKVVAVNDPFMDLEYMAYLFRYDSTHGQYKGTVESKDGKLVIDGNAIQVYSAKNPAEIAWGSAGADYVCESTGVFTTSEKASAHIKGGCKKVVISAPPKDSTPMFVMGVNHKNYDGSVQVVSNASCTTNCLAPLAKVINDNFGIVEGLMTTVHSVTANQLPVDGPSKGGKDWRAGRGCGQNIIPASTGAAKAVGKVLPELNGKLTGMAFRVPTVNVSVVDLTVRLQKGASMEAIKSAVKKASENELKGILGYTEDEVVSSDFIHDKRSSVFDANACISLNDNFVKLISWYDNEWGYSNRLVDLMVHMSSVDN 436
[Close]
BLAST of NO27G00920 vs. NCBI_GenBank
Match: AAF44719.1 (glyceraldehyde-3-phosphate dehydrogenase [Achlya bisexualis])

HSP 1 Score: 538.1 bits (1385), Expect = 2.000e-149
Identity = 258/336 (76.79%), Postives = 290/336 (86.31%), Query Frame = 0 
Query:    6 VRIGINGFGRIGRLVCRAAVQNPKTVVTAINDPFMDVEYMVYQFKYDSVHGRFNGTVEAKDGNLVINGEVIKVYKAKDPAEIGWGEAGADYVCESTGVFTSTEKGGSHLKGGAKKVIISAPPKDSTPMFVMGVNHTDYKAGTDVVSNASCTTNCLAPVAKVLNDNFGIVEGLMTTVHAMTANQLTVDGPSKGGKDWRAGRCAGYNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTADVSVVDLTVKLAKETSLDEIKKLIKAASEGSMKGVLGYTEEDVVSCDFITDSRSSIFDAGACIGLSPTFFKLVSWYDNEWGYSNRLVDLIVHMSTVDN 342
            V IGINGFGRIGRLVCRAA  NP   V AINDPFMD++YMVY FKYDS HG + GTV A+DGNLVI+G V++V+  ++P EI WGEAGADYVCESTGVFT+TEK G HL+GG KKV+ISAPPKDSTPM+VMGVNH  Y     VVSNASCTTNCLAP+AKV++DNFGIVEGLMTTVHA+TANQLTVDGPS+GGKDWRAGR AG N+IPASTGAAKAVGKV+PELNGKLTGMAFRVP  DVSVVDLTV+L K  SLD IK  +K ASEGSM G+LGYTE++VVS DF++D RSSIFDA ACI L+  F KLVSWYDNEWGYSNRLVDL+VHM+T+DN
Sbjct:    4 VAIGINGFGRIGRLVCRAAFANPNATVVAINDPFMDLDYMVYLFKYDSTHGGYKGTVVAEDGNLVIDGHVVRVFSERNPNEIPWGEAGADYVCESTGVFTTTEKAGLHLQGGCKKVVISAPPKDSTPMYVMGVNHDKYDGSAHVVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAVTANQLTVDGPSRGGKDWRAGRGAGANVIPASTGAAKAVGKVLPELNGKLTGMAFRVPVPDVSVVDLTVRLEKGASLDTIKAAVKEASEGSMAGILGYTEDEVVSQDFVSDKRSSIFDANACIALNDNFVKLVSWYDNEWGYSNRLVDLVVHMATIDN 339
[Close]
BLAST of NO27G00920 vs. NCBI_GenBank
Match: CCA13959.1 (triosephosphate isomerase/glyceraldehyde3phosphate dehydrogenase putative [Albugo laibachii Nc14])

HSP 1 Score: 537.3 bits (1383), Expect = 3.400e-149
Identity = 253/340 (74.41%), Postives = 293/340 (86.18%), Query Frame = 0 
Query:    1 MADTRVRIGINGFGRIGRLVCRAAVQNPKTVVTAINDPFMDVEYMVYQFKYDSVHGRFNGTVEAKDGNLVINGEVIKVYKAKDPAEIGWGEAGADYVCESTGVFTSTEKGGSHLKGGAKKVIISAPPKDSTPMFVMGVNHTDYKAGTDVVSNASCTTNCLAPVAKVLNDNFGIVEGLMTTVHAMTANQLTVDGPSKGGKDWRAGRCAGYNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTADVSVVDLTVKLAKETSLDEIKKLIKAASEGSMKGVLGYTEEDVVSCDFITDSRSSIFDAGACIGLSPTFFKLVSWYDNEWGYSNRLVDLIVHMSTVD 341
            M++ +V IGINGFGRIGRLVCRAA++NPKT V A+NDPFMD+EYM Y F+YDS HG++ GTVE KDG LVI+G  I+VY AK+PAEI WG AGADYVCESTGVFT++E   +H+KGG KKV+ISAPPKDSTPMFVMGVNH +Y     VVSNASCTTNCLAP+AKV++DNFGI+EGLMTTVH++TANQL VDGPSKGGKDWRAGR  G NIIPASTGAAKAVGKV+PELNGKLTGMAFRVPT +VSVVDLTV+L K  S++ IK  +K ASE  +KG+LGYTE+++VS DFI D RSS+FDA ACI L+  F KL+SWYDNEWGYSNRLVDL+VHMSTVD
Sbjct:    1 MSEKQVAIGINGFGRIGRLVCRAAMENPKTKVVAVNDPFMDMEYMAYLFRYDSTHGQYKGTVEIKDGKLVIDGNAIQVYSAKNPAEIAWGSAGADYVCESTGVFTTSETASAHIKGGCKKVVISAPPKDSTPMFVMGVNHKNYDGSVQVVSNASCTTNCLAPLAKVISDNFGILEGLMTTVHSVTANQLPVDGPSKGGKDWRAGRGCGQNIIPASTGAAKAVGKVLPELNGKLTGMAFRVPTVNVSVVDLTVRLQKSASMEAIKSAVKKASENELKGILGYTEDEMVSSDFIHDKRSSVFDANACISLNDNFVKLISWYDNEWGYSNRLVDLMVHMSTVD 340
[Close]
BLAST of NO27G00920 vs. NCBI_GenBank
Match: XP_012193596.1 (glyceraldehyde-3-phosphate dehydrogenase [Saprolegnia parasitica CBS 223.65] >KDO35245.1 glyceraldehyde-3-phosphate dehydrogenase [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 530.4 bits (1365), Expect = 4.100e-147
Identity = 251/339 (74.04%), Postives = 290/339 (85.55%), Query Frame = 0 
Query:    4 TRVRIGINGFGRIGRLVCRAAVQNPKTVVTAINDPFMDVEYMVYQFKYDSVHGRFNGTVEAKDGNLVINGEVIKVYKAKDPAEIGWGEAGADYVCESTGVFTSTEKGGSHLKGGAKKVIISAPPKDSTPMFVMGVNHTDYKAGTDVVSNASCTTNCLAPVAKVLNDNFGIVEGLMTTVHAMTANQLTVDGPSKGGKDWRAGRCAGYNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTADVSVVDLTVKLAKETSLDEIKKLIKAASEGSMKGVLGYTEEDVVSCDFITDSRSSIFDAGACIGLSPTFFKLVSWYDNEWGYSNRLVDLIVHMSTVDNK 343
            T V++GINGFGRIGRLVCRAA  NP   V AINDPFMD++YMVY FKYDS HG + GTVEAKDGNLVI+G V++++  ++PA+I WG+AGADYVCESTGVFT+TE    H+ GG KKVIISAPPKDSTPM+VMGVNH  Y     VVSNASCTTNCLAP+AKV++D+FGI+EGLMTTVHA+TANQLTVDGPS+GGKDWRAGR AG N+IPASTGAAKAVGKV+PELNGKLTGMAFRVP  DVSVVDLTV+L +  SL  IK  +KAASEG M G+LGYTE++VVS DF++D RSSIFDA ACI L+  F KLVSWYDNEWGYSNRLVDL++HM+T+D K
Sbjct:    8 TTVKLGINGFGRIGRLVCRAAFANPNATVVAINDPFMDLDYMVYLFKYDSTHGGYKGTVEAKDGNLVIDGHVVRIFAERNPAQIPWGDAGADYVCESTGVFTTTEAASQHINGGCKKVIISAPPKDSTPMYVMGVNHDKYDGSAHVVSNASCTTNCLAPLAKVIHDHFGIIEGLMTTVHAVTANQLTVDGPSRGGKDWRAGRGAGANVIPASTGAAKAVGKVLPELNGKLTGMAFRVPVPDVSVVDLTVRLERGASLAAIKAAVKAASEGPMAGILGYTEDEVVSQDFVSDKRSSIFDANACIALNDHFVKLVSWYDNEWGYSNRLVDLVLHMATIDQK 346
[Close]
BLAST of NO27G00920 vs. NCBI_GenBank
Match: KUG00031.1 (hypothetical protein AM588_10008982 [Phytophthora nicotianae])

HSP 1 Score: 528.9 bits (1361), Expect = 1.200e-146
Identity = 253/337 (75.07%), Postives = 288/337 (85.46%), Query Frame = 0 
Query:    4 TRVRIGINGFGRIGRLVCRAAVQNPKTVVTAINDPFMDVEYMVYQFKYDSVHGRFNGTVEAKDGNLVINGEVIKVYKAKDPAEIGWGEAGADYVCESTGVFTSTEKGGSHLKGGAKKVIISAPPKDSTPMFVMGVNHTDYKAGTDVVSNASCTTNCLAPVAKVLNDNFGIVEGLMTTVHAMTANQLTVDGPSKGGKDWRAGRCAGYNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTADVSVVDLTVKLAKETSLDEIKKLIKAASEGSMKGVLGYTEEDVVSCDFITDSRSSIFDAGACIGLSPTFFKLVSWYDNEWGYSNRLVDLIVHMSTVD 341
            + V+IGINGFGRIGRLV RAA++NPKT V AINDPFMD+EYM Y FKYDS HG+F GTVE KDGNLVING+VI V+ A++P+EI WG+AGA YVCESTGVFT+TEK  +H++GG KKV+ISAPPKDSTPM+VMGVNH +Y     VVSNASCTTNCLAP+AKV+NDNFGIVEGLMTTVHA TA QL VDGP+KGGKDWR GR  G NIIP+STGAAKAVGKV+P LNGKLTGMAFRVPT DVSVVDLT +L K  S+D IK  +KAASEG + G+LGYTE+ VVS DF+ D RSSIFDA ACI L+  F KLVSWYDNEWGYSNRLVDL++HM+TVD
Sbjct:    2 SEVKIGINGFGRIGRLVARAAIENPKTKVVAINDPFMDLEYMAYLFKYDSTHGKFAGTVETKDGNLVINGQVIHVFTARNPSEIPWGKAGATYVCESTGVFTTTEKAQAHIEGGCKKVVISAPPKDSTPMYVMGVNHKEYDGSAPVVSNASCTTNCLAPLAKVINDNFGIVEGLMTTVHATTATQLPVDGPAKGGKDWRGGRGCGQNIIPSSTGAAKAVGKVLPVLNGKLTGMAFRVPTPDVSVVDLTCRLEKAASMDAIKAAVKAASEGELSGILGYTEDQVVSNDFLHDKRSSIFDAEACIALNDNFVKLVSWYDNEWGYSNRLVDLVLHMATVD 338
[Close]
BLAST of NO27G00920 vs. NCBI_GenBank
Match: XP_008891295.1 (glyceraldehyde-3-phosphate dehydrogenase [Phytophthora parasitica INRA-310] >XP_008891296.1 glyceraldehyde-3-phosphate dehydrogenase, variant [Phytophthora parasitica INRA-310] >ETN24939.1 glyceraldehyde-3-phosphate dehydrogenase [Phytophthora parasitica INRA-310] >ETN24940.1 glyceraldehyde-3-phosphate dehydrogenase, variant [Phytophthora parasitica INRA-310])

HSP 1 Score: 527.7 bits (1358), Expect = 2.700e-146
Identity = 252/336 (75.00%), Postives = 288/336 (85.71%), Query Frame = 0 
Query:    5 RVRIGINGFGRIGRLVCRAAVQNPKTVVTAINDPFMDVEYMVYQFKYDSVHGRFNGTVEAKDGNLVINGEVIKVYKAKDPAEIGWGEAGADYVCESTGVFTSTEKGGSHLKGGAKKVIISAPPKDSTPMFVMGVNHTDYKAGTDVVSNASCTTNCLAPVAKVLNDNFGIVEGLMTTVHAMTANQLTVDGPSKGGKDWRAGRCAGYNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTADVSVVDLTVKLAKETSLDEIKKLIKAASEGSMKGVLGYTEEDVVSCDFITDSRSSIFDAGACIGLSPTFFKLVSWYDNEWGYSNRLVDLIVHMSTVD 341
            +V IGINGFGRIGRLV RAA++NPKT V AINDPFMD+EYM Y FKYDS HG+F+G+VE KDGNLV+NGEVI V+ A++P+EI WG+AGA YVCESTGVFT+TEK  +H++GG KKV+ISAPPKDSTPM+VMGVNH +Y     VVSNASCTTNCLAP+AKV+NDNFGIVEGLMTTVHA TA QL VDGP+KGGKDWR GR  G NIIP+STGAAKAVGKV+P LNGKLTGMAFRVPT DVSVVDLT +L K  S+D IK  +KAASEG + G+LGYTE+ VVS DF+ D RSSIFDA ACI L+  F KLVSWYDNEWGYSNRLVDL++HM+TVD
Sbjct:    4 QVAIGINGFGRIGRLVARAAIENPKTKVVAINDPFMDLEYMAYLFKYDSTHGKFDGSVETKDGNLVVNGEVIHVFAARNPSEIPWGKAGATYVCESTGVFTTTEKAQAHIEGGCKKVVISAPPKDSTPMYVMGVNHKEYDGSAPVVSNASCTTNCLAPLAKVINDNFGIVEGLMTTVHATTATQLPVDGPAKGGKDWRGGRGCGQNIIPSSTGAAKAVGKVLPVLNGKLTGMAFRVPTPDVSVVDLTCRLEKAASMDAIKAAVKAASEGELSGILGYTEDQVVSNDFLHDKRSSIFDAEACIALNDNFVKLVSWYDNEWGYSNRLVDLVLHMATVD 339
The following BLAST results are available for this feature:
BLAST of NO27G00920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20997.11.800e-17991.52glyceraldehyde 3-phosphate [Nannochloropsis gadita... [more]
CCI40112.14.200e-15275.66unnamed protein product [Albugo candida][more]
CCI40113.14.200e-15275.66unnamed protein product [Albugo candida][more]
CCI40114.14.200e-15275.66unnamed protein product [Albugo candida][more]
CCI40115.14.200e-15275.66unnamed protein product [Albugo candida][more]
AAF44719.12.000e-14976.79glyceraldehyde-3-phosphate dehydrogenase [Achlya b... [more]
CCA13959.13.400e-14974.41triosephosphate isomerase/glyceraldehyde3phosphate... [more]
XP_012193596.14.100e-14774.04glyceraldehyde-3-phosphate dehydrogenase [Saproleg... [more]
KUG00031.11.200e-14675.07hypothetical protein AM588_10008982 [Phytophthora ... [more]
XP_008891295.12.700e-14675.00glyceraldehyde-3-phosphate dehydrogenase [Phytopht... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL057nonsL057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00920.1NO27G00920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00920.1NO27G00920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00920 ID=NO27G00920|Name=NO27G00920|organism=Nannochloropsis oceanica|type=gene|length=3911bp
TGGTCGGCGAGTCCTTCTGCTCGAACCCCACCCCTTGCGCCTGGCACATG
CCTTCATGACGAGGGATCGTGAAACGCATTGATGGCACAGGCCTTAAGCA
TGCTTTTCACGTCGCAGATTTTGGCCTGTGTCTCATTCTGCTATTCGCGA
CCTGGCCACCATCCATCTTGAACTTGATTGCAGGATCTTCTTGATGCGTC
ACAAAACGAACCTTCCATTTGAGCATTTGTTCTCGTACGTCCATAAAGCC
GCCTCGTCCCATCAACTACAAATTGGCTGCCGAGAAGCGCTGATATCCTC
GGACGCTTCAGAAATATGGGACATGCATGCACTGCTAAGCTGATATGCTG
ATCGATGATGGTGATGAAAGTCCGCCGCTGCCGGCGCCCCTTCTCTCTCA
CGTATATATGTACCATCCTTACACGCGCGTGCCCCGCTAGTTTTGCCCCT
GCACTAACTATCCCACGACCCGCAGCTCACGACTTCCATGCAAGACGATG
GCGATACCTTAGAGTTGGTGTGAGAGCGTGGCGTCGTTTCCATCTGCTGG
CTGGCCTTGCGACGAGCGGGATGCCGACGCCCCACTCAAGGCAGCTGCAA
CTGTGGTTCCCGTCGCCCTCGTCCCAGCTGCATTCATCCATCTCACCCCC
TTCATACCATCTACAACTACACAGTACACTTTTCTCGCTTTTAAAGCACC
CCAACCCTTCTCATCAGCAATGGCAGgtaagtctttggctctgtttgtcc
cgcgccatgttcacttccacatgttccgtcatcctcgtcctcgtccggca
tttcttattccacacccgctcctattgtttatcaatcctcttcccccccc
tcatccctctatcttacgacagACACCCGTGTCCGAATTGGAATCAACGG
CTTCGGTCGCATCGGCCGCCTTGTCTGCCGTGCCGCCGTGCAAAACCCCA
AGACCGTCGTCACAGCTATCAATGACCCGTTCATGGACGTTGAGTACATG
GTGTACCAGTTTAAGTACGACTCTGTCCACGGCCGCTTCAATGGGACGGT
AGAGgtaggaagggagggagggaagggaaggagggagggttggccttaat
tcgaagttcccgtcccatttttaacccccatcttttcactacttcaccct
tcatccatatcccccttatgcagGCCAAGGACGGTAACCTCGTGATAAAT
GGTGAAGTGATCAAGgtatggaggcaaggagactaagaaggagggagaga
gagggagttcctccacacgagctgctttttctcctctctcacccctccct
tgcccccctcctttgttcccttatttcccatctaacagGTGTACAAGGCC
AAGGACCCCGCAGAGATCGGGTGGGGGGAGGCAGGTGCTGACTATGTGTG
CGAGTCCACGGGCGTCTTCACCTCCACTGAGAAGGGCGGGAGCCACTTGA
AGGGAGGCGCCAAGAAGGTGATCATCTCGGCCCCGCCGAAGGATAGCACG
CCCATGTTCGTCATGGGAGTCAACCACACAGACTATAAGGgtacgtccag
tcagccctttgtgccctcccttcctaccatccctccctccggttgtcttt
agcctggtgatgggcattcactttccctccccccctccctccgcccgcag
CCGGCACGGACGTGGTCTCCAATGCGTCGTGCACCACCAATTGCCTGGCC
CCTGTGGCCAAGGTCCTGAACGATAATTTCGGGATTGTGGAGGGGCTCAT
GACGACGGTGCATGCCATGACTGCCAACCAGCTGACGGTCGATGGCCCGA
GCAAGGGAGGCAAGGACTGGCGgtaaggatcaatcgagaagggaaaaagc
atgaataaatggatccataaatcatgtccgaccactgggacgagcccttg
atttaattttcgaaatgtacgcacacagGGCGGGGCGTTGCGCCGGCTAC
AACATCATCCCCGCCTCCACTGGTGCAGCCAAGGCCGTAGGGAAGGTCAT
CCCGGAGCTGAACGGGAAGTTGACTGGCATGGCTTTTCGTGTCCCTACCG
CCGATGTCTCTGTGGTGGACCTGACGGTGAAGCTCGCGAAGGAGACGAGC
TTGGACGAGATCAAAAAGCTGATCAAGGCGGCGAGTGAAGGGTCCATGAA
AGGCGTGTTGGGATACACGGAGgtgaggaagaggggagggagggaaggag
gggagaaagcacggtaggaccctttttatgtactcctccccaacttttca
agaggaaaaagaagtgatatgcagggagtatcaatgtatttgtgagttta
tcaatgtgtgtgtgtgtttatcaatgtgtgtgtatgtgtgtatcaatatg
tgtgtgtgtgtatcaatatgtgtgtgtgaagaaatgtgtgtgtgtgtgtg
tgtgtgtgagtgtttcatttttttttaaggccactcattgcctcgatccc
cgctctcctgccatttcagtcaattacacgaattggtcggccgttaaatt
aatgacgtcactccatcctctcccttcctcccccttcctcttctctaccc
ctgccaccaactacagGAGGATGTGGTGAGCTGTGACTTCATCACGGACT
CCCGGTCGTCCATTTTCGATGCGGGGGCTTGCATCGGCCTGAGCCCGACG
TTTTTCAAGCTGGTGTCGTGGTATGACAATGgtgagtgattgtgattata
tggattatcgactttttttcgattttgttaatttttttatttcccgattt
ttcatacggtttaatttataaccttccttatgtacttacttgctgtttat
atatgtgtctgtccgttctctggtacgtgacatctcaacagtccgtgttt
gtcccctgctactccctgtcttccgtttatattctatttccttcctcccc
ccctcttgtgtatttttcctgattcactcactcattcactctctcaatcc
ctgcctcccccctttccctccctgcccaaagAGTGGGGCTACTCCAACAG
GCTGGTGGACCTGATCGTGCACATGTCGACCGTCGATAACAAGTAAGGTA
GCGCAAGGCACGTCCCAAGCACAATCACCGTCTCTTGCTGCTGCTGCTGC
CGAAGCAGCAGCAGCAATGGTGGCTGCTGTTACTATTTTCAATATCAATT
ATTATTTAGTCGTTTTTTTCCTTTCTTTCATTCGGTTCGTCGGAAGTGAG
GGAGGAAGAGGGAGGGGAGGGAAGAAAGGAGATTATGTATCGATTTCTGA
TTCCTTTCGTTTTTCTCTTGCTTGGGCCGTAGAAAAAGGAGAACGAAACG
GAGAGATAGTCATTTTTTCCTCTTTGTTGTAGGCTAGCAAAAGAGAGCTA
TGGAGGTAGAGAAAGGAAAAAGGAAGAGATAGGAGAGAGGGAGGGAGAGA
GGAAAGGAGAAAATCAGGAAAAGAGAATGGTACCTCAGAGAGAAAATAGA
TGGAGAGAAAGGAGGGCGAGGAACATCGAGAGAGGGGGGGGGAGGAGAGG
AAGGAGTATATTGCAACCGCACTCTGCACTCCTGTCTTGCAGCAGCACAG
CGGCAGCAGGAGATGCAGGGAAATGAGAAGGAAGATGAATCAGTCCACCA
ATGTGTCTGTATTTTTGTTCCTTTTTCCGTCTCGTCTTCGTTTCGGTGAG
GGAGATAGAGAGAGGGGCGGCAGGATCAGGGGAAGAATAGGAGTAACAAA
GAAACACGATGTTGGAAGGAAAGAAAAGTGGGTGGTATTTTTTCTTGTTT
TGAGAGATTGTTTCATTTTTTTCTTTTCTCCAAGTGTTAGCCGCTCGCTG
CTTCTGTCCTTCATGGAAGATGTGGTGAGCGACAGGCAGTCAATGACATA
GAAGAACCACCGCGAGAAGAGTCAAGAAAGAGGGAAGAAGAAAGGAAGAA
GCGAGTCTTGT
back to top

protein sequence of NO27G00920.1

>NO27G00920.1-protein ID=NO27G00920.1-protein|Name=NO27G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MADTRVRIGINGFGRIGRLVCRAAVQNPKTVVTAINDPFMDVEYMVYQFK
YDSVHGRFNGTVEAKDGNLVINGEVIKVYKAKDPAEIGWGEAGADYVCES
TGVFTSTEKGGSHLKGGAKKVIISAPPKDSTPMFVMGVNHTDYKAGTDVV
SNASCTTNCLAPVAKVLNDNFGIVEGLMTTVHAMTANQLTVDGPSKGGKD
WRAGRCAGYNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTADVSVVDL
TVKLAKETSLDEIKKLIKAASEGSMKGVLGYTEEDVVSCDFITDSRSSIF
DAGACIGLSPTFFKLVSWYDNEWGYSNRLVDLIVHMSTVDNK*
back to top
Synonyms
Publications