NO27G00920.1, NO27G00920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00920.1
Unique NameNO27G00920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2613
Alignment locationchr27:310523..314433 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:310523..314433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G00920.1 vs.
Match: EWM20997.1 (glyceraldehyde 3-phosphate [Nannochloropsis gaditana])

HSP 1 Score: 637.9 bits (1644), Expect = 1.800e-179
Identity = 313/342 (91.52%), Postives = 328/342 (95.91%), Query Frame = 0 
Query:    1 MADTRVRIGINGFGRIGRLVCRAAVQNPKTVVTAINDPFMDVEYMVYQFKYDSVHGRFNGTVEAKDGNLVINGEVIKVYKAKDPAEIGWGEAGADYVCESTGVFTSTEKGGSHLKGGAKKVIISAPPKDSTPMFVMGVNHTDYKAGTDVVSNASCTTNCLAPVAKVLNDNFGIVEGLMTTVHAMTANQLTVDGPSKGGKDWRAGRCAGYNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTADVSVVDLTVKLAKETSLDEIKKLIKAASEGSMKGVLGYTEEDVVSCDFITDSRSSIFDAGACIGLSPTFFKLVSWYDNEWGYSNRLVDLIVHMSTVDNK 343
            MAD+RVRIGINGFGRIGRLVCRAAV+NPKTVV AINDPFMDVEYMVYQFKYDSVHGRF+GTVEAKDGNLVINGEV+KVYKAKDP+EIGWGEAGADYVCESTGVFT+TEK GSHLKGG+KKVIISAPPKD TPMFVMGVNHT+YK   DVVSNASCTTNCLAP+AKV+NDNFGIVEGLMTTVHAMTANQLTVDGPSKGGKDWRAGR AG N+IPASTGAAKAVGKVIPELNGKLTGMAFRVPTADVSVVDLTVK+AKETSLD IK LIK ASEGSMKGVLGYTEEDVVS DF+TD RSSIFDAGACIGL+ TFFKLVSWYDNEWGYSNRLVDLIVHMSTVD+K
Sbjct:    1 MADSRVRIGINGFGRIGRLVCRAAVKNPKTVVKAINDPFMDVEYMVYQFKYDSVHGRFDGTVEAKDGNLVINGEVVKVYKAKDPSEIGWGEAGADYVCESTGVFTTTEKAGSHLKGGSKKVIISAPPKDGTPMFVMGVNHTNYKPDMDVVSNASCTTNCLAPLAKVVNDNFGIVEGLMTTVHAMTANQLTVDGPSKGGKDWRAGRSAGVNVIPASTGAAKAVGKVIPELNGKLTGMAFRVPTADVSVVDLTVKVAKETSLDAIKALIKEASEGSMKGVLGYTEEDVVSQDFVTDCRSSIFDAGACIGLNSTFFKLVSWYDNEWGYSNRLVDLIVHMSTVDSK 342
The following BLAST results are available for this feature:
BLAST of NO27G00920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20997.11.800e-17991.52glyceraldehyde 3-phosphate [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00920NO27G00920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00920.1NO27G00920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00920.1.cds1NO27G00920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00920.1.cds2NO27G00920.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00920.1.cds3NO27G00920.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00920.1.cds4NO27G00920.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00920.1.cds5NO27G00920.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00920.1.cds6NO27G00920.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00920.1.cds7NO27G00920.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00920.1.cds8NO27G00920.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00920.1 ID=NO27G00920.1|Name=NO27G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2613bp
TGGTCGGCGAGTCCTTCTGCTCGAACCCCACCCCTTGCGCCTGGCACATG
CCTTCATGACGAGGGATCGTGAAACGCATTGATGGCACAGGCCTTAAGCA
TGCTTTTCACGTCGCAGATTTTGGCCTGTGTCTCATTCTGCTATTCGCGA
CCTGGCCACCATCCATCTTGAACTTGATTGCAGGATCTTCTTGATGCGTC
ACAAAACGAACCTTCCATTTGAGCATTTGTTCTCGTACGTCCATAAAGCC
GCCTCGTCCCATCAACTACAAATTGGCTGCCGAGAAGCGCTGATATCCTC
GGACGCTTCAGAAATATGGGACATGCATGCACTGCTAAGCTGATATGCTG
ATCGATGATGGTGATGAAAGTCCGCCGCTGCCGGCGCCCCTTCTCTCTCA
CGTATATATGTACCATCCTTACACGCGCGTGCCCCGCTAGTTTTGCCCCT
GCACTAACTATCCCACGACCCGCAGCTCACGACTTCCATGCAAGACGATG
GCGATACCTTAGAGTTGGTGTGAGAGCGTGGCGTCGTTTCCATCTGCTGG
CTGGCCTTGCGACGAGCGGGATGCCGACGCCCCACTCAAGGCAGCTGCAA
CTGTGGTTCCCGTCGCCCTCGTCCCAGCTGCATTCATCCATCTCACCCCC
TTCATACCATCTACAACTACACAGTACACTTTTCTCGCTTTTAAAGCACC
CCAACCCTTCTCATCAGCAATGGCAGACACCCGTGTCCGAATTGGAATCA
ACGGCTTCGGTCGCATCGGCCGCCTTGTCTGCCGTGCCGCCGTGCAAAAC
CCCAAGACCGTCGTCACAGCTATCAATGACCCGTTCATGGACGTTGAGTA
CATGGTGTACCAGTTTAAGTACGACTCTGTCCACGGCCGCTTCAATGGGA
CGGTAGAGGCCAAGGACGGTAACCTCGTGATAAATGGTGAAGTGATCAAG
GTGTACAAGGCCAAGGACCCCGCAGAGATCGGGTGGGGGGAGGCAGGTGC
TGACTATGTGTGCGAGTCCACGGGCGTCTTCACCTCCACTGAGAAGGGCG
GGAGCCACTTGAAGGGAGGCGCCAAGAAGGTGATCATCTCGGCCCCGCCG
AAGGATAGCACGCCCATGTTCGTCATGGGAGTCAACCACACAGACTATAA
GGCCGGCACGGACGTGGTCTCCAATGCGTCGTGCACCACCAATTGCCTGG
CCCCTGTGGCCAAGGTCCTGAACGATAATTTCGGGATTGTGGAGGGGCTC
ATGACGACGGTGCATGCCATGACTGCCAACCAGCTGACGGTCGATGGCCC
GAGCAAGGGAGGCAAGGACTGGCGGGCGGGGCGTTGCGCCGGCTACAACA
TCATCCCCGCCTCCACTGGTGCAGCCAAGGCCGTAGGGAAGGTCATCCCG
GAGCTGAACGGGAAGTTGACTGGCATGGCTTTTCGTGTCCCTACCGCCGA
TGTCTCTGTGGTGGACCTGACGGTGAAGCTCGCGAAGGAGACGAGCTTGG
ACGAGATCAAAAAGCTGATCAAGGCGGCGAGTGAAGGGTCCATGAAAGGC
GTGTTGGGATACACGGAGGAGGATGTGGTGAGCTGTGACTTCATCACGGA
CTCCCGGTCGTCCATTTTCGATGCGGGGGCTTGCATCGGCCTGAGCCCGA
CGTTTTTCAAGCTGGTGTCGTGGTATGACAATGAGTGGGGCTACTCCAAC
AGGCTGGTGGACCTGATCGTGCACATGTCGACCGTCGATAACAAGTAAGG
TAGCGCAAGGCACGTCCCAAGCACAATCACCGTCTCTTGCTGCTGCTGCT
GCCGAAGCAGCAGCAGCAATGGTGGCTGCTGTTACTATTTTCAATATCAA
TTATTATTTAGTCGTTTTTTTCCTTTCTTTCATTCGGTTCGTCGGAAGTG
AGGGAGGAAGAGGGAGGGGAGGGAAGAAAGGAGATTATGTATCGATTTCT
GATTCCTTTCGTTTTTCTCTTGCTTGGGCCGTAGAAAAAGGAGAACGAAA
CGGAGAGATAGTCATTTTTTCCTCTTTGTTGTAGGCTAGCAAAAGAGAGC
TATGGAGGTAGAGAAAGGAAAAAGGAAGAGATAGGAGAGAGGGAGGGAGA
GAGGAAAGGAGAAAATCAGGAAAAGAGAATGGTACCTCAGAGAGAAAATA
GATGGAGAGAAAGGAGGGCGAGGAACATCGAGAGAGGGGGGGGGAGGAGA
GGAAGGAGTATATTGCAACCGCACTCTGCACTCCTGTCTTGCAGCAGCAC
AGCGGCAGCAGGAGATGCAGGGAAATGAGAAGGAAGATGAATCAGTCCAC
CAATGTGTCTGTATTTTTGTTCCTTTTTCCGTCTCGTCTTCGTTTCGGTG
AGGGAGATAGAGAGAGGGGCGGCAGGATCAGGGGAAGAATAGGAGTAACA
AAGAAACACGATGTTGGAAGGAAAGAAAAGTGGGTGGTATTTTTTCTTGT
TTTGAGAGATTGTTTCATTTTTTTCTTTTCTCCAAGTGTTAGCCGCTCGC
TGCTTCTGTCCTTCATGGAAGATGTGGTGAGCGACAGGCAGTCAATGACA
TAGAAGAACCACCGCGAGAAGAGTCAAGAAAGAGGGAAGAAGAAAGGAAG
AAGCGAGTCTTGT
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protein sequence of NO27G00920.1

>NO27G00920.1-protein ID=NO27G00920.1-protein|Name=NO27G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MADTRVRIGINGFGRIGRLVCRAAVQNPKTVVTAINDPFMDVEYMVYQFK
YDSVHGRFNGTVEAKDGNLVINGEVIKVYKAKDPAEIGWGEAGADYVCES
TGVFTSTEKGGSHLKGGAKKVIISAPPKDSTPMFVMGVNHTDYKAGTDVV
SNASCTTNCLAPVAKVLNDNFGIVEGLMTTVHAMTANQLTVDGPSKGGKD
WRAGRCAGYNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTADVSVVDL
TVKLAKETSLDEIKKLIKAASEGSMKGVLGYTEEDVVSCDFITDSRSSIF
DAGACIGLSPTFFKLVSWYDNEWGYSNRLVDLIVHMSTVDNK*
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mRNA from alignment at chr27:310523..314433-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00920.1 ID=NO27G00920.1|Name=NO27G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=3911bp|location=Sequence derived from alignment at chr27:310523..314433- (Nannochloropsis oceanica)
TGGTCGGCGAGTCCTTCTGCTCGAACCCCACCCCTTGCGCCTGGCACATG
CCTTCATGACGAGGGATCGTGAAACGCATTGATGGCACAGGCCTTAAGCA
TGCTTTTCACGTCGCAGATTTTGGCCTGTGTCTCATTCTGCTATTCGCGA
CCTGGCCACCATCCATCTTGAACTTGATTGCAGGATCTTCTTGATGCGTC
ACAAAACGAACCTTCCATTTGAGCATTTGTTCTCGTACGTCCATAAAGCC
GCCTCGTCCCATCAACTACAAATTGGCTGCCGAGAAGCGCTGATATCCTC
GGACGCTTCAGAAATATGGGACATGCATGCACTGCTAAGCTGATATGCTG
ATCGATGATGGTGATGAAAGTCCGCCGCTGCCGGCGCCCCTTCTCTCTCA
CGTATATATGTACCATCCTTACACGCGCGTGCCCCGCTAGTTTTGCCCCT
GCACTAACTATCCCACGACCCGCAGCTCACGACTTCCATGCAAGACGATG
GCGATACCTTAGAGTTGGTGTGAGAGCGTGGCGTCGTTTCCATCTGCTGG
CTGGCCTTGCGACGAGCGGGATGCCGACGCCCCACTCAAGGCAGCTGCAA
CTGTGGTTCCCGTCGCCCTCGTCCCAGCTGCATTCATCCATCTCACCCCC
TTCATACCATCTACAACTACACAGTACACTTTTCTCGCTTTTAAAGCACC
CCAACCCTTCTCATCAGCAATGGCAGGTAAGTCTTTGGCTCTGTTTGTCC
CGCGCCATGTTCACTTCCACATGTTCCGTCATCCTCGTCCTCGTCCGGCA
TTTCTTATTCCACACCCGCTCCTATTGTTTATCAATCCTCTTCCCCCCCC
TCATCCCTCTATCTTACGACAGACACCCGTGTCCGAATTGGAATCAACGG
CTTCGGTCGCATCGGCCGCCTTGTCTGCCGTGCCGCCGTGCAAAACCCCA
AGACCGTCGTCACAGCTATCAATGACCCGTTCATGGACGTTGAGTACATG
GTGTACCAGTTTAAGTACGACTCTGTCCACGGCCGCTTCAATGGGACGGT
AGAGGTAGGAAGGGAGGGAGGGAAGGGAAGGAGGGAGGGTTGGCCTTAAT
TCGAAGTTCCCGTCCCATTTTTAACCCCCATCTTTTCACTACTTCACCCT
TCATCCATATCCCCCTTATGCAGGCCAAGGACGGTAACCTCGTGATAAAT
GGTGAAGTGATCAAGGTATGGAGGCAAGGAGACTAAGAAGGAGGGAGAGA
GAGGGAGTTCCTCCACACGAGCTGCTTTTTCTCCTCTCTCACCCCTCCCT
TGCCCCCCTCCTTTGTTCCCTTATTTCCCATCTAACAGGTGTACAAGGCC
AAGGACCCCGCAGAGATCGGGTGGGGGGAGGCAGGTGCTGACTATGTGTG
CGAGTCCACGGGCGTCTTCACCTCCACTGAGAAGGGCGGGAGCCACTTGA
AGGGAGGCGCCAAGAAGGTGATCATCTCGGCCCCGCCGAAGGATAGCACG
CCCATGTTCGTCATGGGAGTCAACCACACAGACTATAAGGGTACGTCCAG
TCAGCCCTTTGTGCCCTCCCTTCCTACCATCCCTCCCTCCGGTTGTCTTT
AGCCTGGTGATGGGCATTCACTTTCCCTCCCCCCCTCCCTCCGCCCGCAG
CCGGCACGGACGTGGTCTCCAATGCGTCGTGCACCACCAATTGCCTGGCC
CCTGTGGCCAAGGTCCTGAACGATAATTTCGGGATTGTGGAGGGGCTCAT
GACGACGGTGCATGCCATGACTGCCAACCAGCTGACGGTCGATGGCCCGA
GCAAGGGAGGCAAGGACTGGCGGTAAGGATCAATCGAGAAGGGAAAAAGC
ATGAATAAATGGATCCATAAATCATGTCCGACCACTGGGACGAGCCCTTG
ATTTAATTTTCGAAATGTACGCACACAGGGCGGGGCGTTGCGCCGGCTAC
AACATCATCCCCGCCTCCACTGGTGCAGCCAAGGCCGTAGGGAAGGTCAT
CCCGGAGCTGAACGGGAAGTTGACTGGCATGGCTTTTCGTGTCCCTACCG
CCGATGTCTCTGTGGTGGACCTGACGGTGAAGCTCGCGAAGGAGACGAGC
TTGGACGAGATCAAAAAGCTGATCAAGGCGGCGAGTGAAGGGTCCATGAA
AGGCGTGTTGGGATACACGGAGGTGAGGAAGAGGGGAGGGAGGGAAGGAG
GGGAGAAAGCACGGTAGGACCCTTTTTATGTACTCCTCCCCAACTTTTCA
AGAGGAAAAAGAAGTGATATGCAGGGAGTATCAATGTATTTGTGAGTTTA
TCAATGTGTGTGTGTGTTTATCAATGTGTGTGTATGTGTGTATCAATATG
TGTGTGTGTGTATCAATATGTGTGTGTGAAGAAATGTGTGTGTGTGTGTG
TGTGTGTGAGTGTTTCATTTTTTTTTAAGGCCACTCATTGCCTCGATCCC
CGCTCTCCTGCCATTTCAGTCAATTACACGAATTGGTCGGCCGTTAAATT
AATGACGTCACTCCATCCTCTCCCTTCCTCCCCCTTCCTCTTCTCTACCC
CTGCCACCAACTACAGGAGGATGTGGTGAGCTGTGACTTCATCACGGACT
CCCGGTCGTCCATTTTCGATGCGGGGGCTTGCATCGGCCTGAGCCCGACG
TTTTTCAAGCTGGTGTCGTGGTATGACAATGGTGAGTGATTGTGATTATA
TGGATTATCGACTTTTTTTCGATTTTGTTAATTTTTTTATTTCCCGATTT
TTCATACGGTTTAATTTATAACCTTCCTTATGTACTTACTTGCTGTTTAT
ATATGTGTCTGTCCGTTCTCTGGTACGTGACATCTCAACAGTCCGTGTTT
GTCCCCTGCTACTCCCTGTCTTCCGTTTATATTCTATTTCCTTCCTCCCC
CCCTCTTGTGTATTTTTCCTGATTCACTCACTCATTCACTCTCTCAATCC
CTGCCTCCCCCCTTTCCCTCCCTGCCCAAAGAGTGGGGCTACTCCAACAG
GCTGGTGGACCTGATCGTGCACATGTCGACCGTCGATAACAAGTAAGGTA
GCGCAAGGCACGTCCCAAGCACAATCACCGTCTCTTGCTGCTGCTGCTGC
CGAAGCAGCAGCAGCAATGGTGGCTGCTGTTACTATTTTCAATATCAATT
ATTATTTAGTCGTTTTTTTCCTTTCTTTCATTCGGTTCGTCGGAAGTGAG
GGAGGAAGAGGGAGGGGAGGGAAGAAAGGAGATTATGTATCGATTTCTGA
TTCCTTTCGTTTTTCTCTTGCTTGGGCCGTAGAAAAAGGAGAACGAAACG
GAGAGATAGTCATTTTTTCCTCTTTGTTGTAGGCTAGCAAAAGAGAGCTA
TGGAGGTAGAGAAAGGAAAAAGGAAGAGATAGGAGAGAGGGAGGGAGAGA
GGAAAGGAGAAAATCAGGAAAAGAGAATGGTACCTCAGAGAGAAAATAGA
TGGAGAGAAAGGAGGGCGAGGAACATCGAGAGAGGGGGGGGGAGGAGAGG
AAGGAGTATATTGCAACCGCACTCTGCACTCCTGTCTTGCAGCAGCACAG
CGGCAGCAGGAGATGCAGGGAAATGAGAAGGAAGATGAATCAGTCCACCA
ATGTGTCTGTATTTTTGTTCCTTTTTCCGTCTCGTCTTCGTTTCGGTGAG
GGAGATAGAGAGAGGGGCGGCAGGATCAGGGGAAGAATAGGAGTAACAAA
GAAACACGATGTTGGAAGGAAAGAAAAGTGGGTGGTATTTTTTCTTGTTT
TGAGAGATTGTTTCATTTTTTTCTTTTCTCCAAGTGTTAGCCGCTCGCTG
CTTCTGTCCTTCATGGAAGATGTGGTGAGCGACAGGCAGTCAATGACATA
GAAGAACCACCGCGAGAAGAGTCAAGAAAGAGGGAAGAAGAAAGGAAGAA
GCGAGTCTTGT
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Coding sequence (CDS) from alignment at chr27:310523..314433-

>NO27G00920.1 ID=NO27G00920.1|Name=NO27G00920.1|organism=Nannochloropsis oceanica|type=CDS|length=1029bp|location=Sequence derived from alignment at chr27:310523..314433- (Nannochloropsis oceanica)
ATGGCAGACACCCGTGTCCGAATTGGAATCAACGGCTTCGGTCGCATCGG
CCGCCTTGTCTGCCGTGCCGCCGTGCAAAACCCCAAGACCGTCGTCACAG
CTATCAATGACCCGTTCATGGACGTTGAGTACATGGTGTACCAGTTTAAG
TACGACTCTGTCCACGGCCGCTTCAATGGGACGGTAGAGGCCAAGGACGG
TAACCTCGTGATAAATGGTGAAGTGATCAAGGTGTACAAGGCCAAGGACC
CCGCAGAGATCGGGTGGGGGGAGGCAGGTGCTGACTATGTGTGCGAGTCC
ACGGGCGTCTTCACCTCCACTGAGAAGGGCGGGAGCCACTTGAAGGGAGG
CGCCAAGAAGGTGATCATCTCGGCCCCGCCGAAGGATAGCACGCCCATGT
TCGTCATGGGAGTCAACCACACAGACTATAAGGCCGGCACGGACGTGGTC
TCCAATGCGTCGTGCACCACCAATTGCCTGGCCCCTGTGGCCAAGGTCCT
GAACGATAATTTCGGGATTGTGGAGGGGCTCATGACGACGGTGCATGCCA
TGACTGCCAACCAGCTGACGGTCGATGGCCCGAGCAAGGGAGGCAAGGAC
TGGCGGGCGGGGCGTTGCGCCGGCTACAACATCATCCCCGCCTCCACTGG
TGCAGCCAAGGCCGTAGGGAAGGTCATCCCGGAGCTGAACGGGAAGTTGA
CTGGCATGGCTTTTCGTGTCCCTACCGCCGATGTCTCTGTGGTGGACCTG
ACGGTGAAGCTCGCGAAGGAGACGAGCTTGGACGAGATCAAAAAGCTGAT
CAAGGCGGCGAGTGAAGGGTCCATGAAAGGCGTGTTGGGATACACGGAGG
AGGATGTGGTGAGCTGTGACTTCATCACGGACTCCCGGTCGTCCATTTTC
GATGCGGGGGCTTGCATCGGCCTGAGCCCGACGTTTTTCAAGCTGGTGTC
GTGGTATGACAATGAGTGGGGCTACTCCAACAGGCTGGTGGACCTGATCG
TGCACATGTCGACCGTCGATAACAAGTAA
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Synonyms
Publications