NO23G00010, NO23G00010 (gene) Nannochloropsis oceanica

Overview
NameNO23G00010
Unique NameNO23G00010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length762
Alignment locationchr23:2340..3101 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:2340..3101 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO23G00010 vs. NCBI_GenBank
Match: XP_005854650.1 (hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526] >EKU21707.1 hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 127.5 bits (319), Expect = 4.000e-26
Identity = 57/144 (39.58%), Postives = 91/144 (63.19%), Query Frame = 0 
Query:   22 VSEESHTRLLHEAWEDPEILRTLMDDLPLFDVIKPLRALKEKKTLTPRYGFDAVLALKDTMGKLLASLQSIRDPENFAETIYKYATNEDPKWKSLLARIEEGDTTSHLESQQFLLNEEIGDVIDLKAFGFGGELPALVTKAYST 166
            ++ ++H   L   W DP + R L D  P     KPLR L  K+ LTP+ G DAV   K+ M K+LA+++++RDPE  A  ++ Y+  +DP+W SL+AR++ G+  + LE QQ++L+ E+G +IDL   GF G+ P+++ +A  T
Sbjct:    2 LTNKAHVDELKATWSDPVVFRFLRDQTPFLKAFKPLRPLFSKEALTPQDGVDAVETFKNAMLKVLATIEAVRDPEGMATLMFNYSNLQDPEWVSLIARLQAGEKEAQLELQQYILDRELGGLIDLNEMGFDGQEPSILKEARET 145
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BLAST of NO23G00010 vs. NCBI_GenBank
Match: EWM24065.1 (hypothetical protein Naga_100063g14 [Nannochloropsis gaditana])

HSP 1 Score: 90.5 bits (223), Expect = 5.400e-15
Identity = 50/157 (31.85%), Postives = 81/157 (51.59%), Query Frame = 0 
Query:    7 TTLDTDLMGLLRNVFVSEESHTRLLHEAWEDPEILRTLMDDLPLFDVIKPLRALKEKKT----LTPRYGFDAVLALKDTMGKLLASLQSIRDPENFAETIYKYATNEDPKWKSLLARIEEGDTTSHLESQQFLLNEEIGDVIDLKAFGFGGELPALV 160
            T++D DL   +R++     +  + LH AW  P + R L+  +PLF   KP++ + + K+     +P  G  A    K  M + +  L ++RDPE FA  +  YA ++D     L A+   G+  +H E   F + +E+GDVIDL   GF G  P+ +
Sbjct:  115 TSMDGDLTNPVRDLV----NGAKDLHAAWAVPHVFRALVTQVPLFQAFKPIQEIIKDKSRDEDYSPEDGVKAAGIFKSFMLRSMDVLDTLRDPEKFAAKLQGYAESKDKTLLDLFAKASRGEDENHKEINNFFMRQELGDVIDLDFLGFSGVEPSFL 267
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BLAST of NO23G00010 vs. NCBI_GenBank
Match: EWM20107.1 (hypothetical protein Naga_101770g1 [Nannochloropsis gaditana])

HSP 1 Score: 89.7 bits (221), Expect = 9.200e-15
Identity = 40/64 (62.50%), Postives = 54/64 (84.38%), Query Frame = 0 
Query:  102 IYKYATNEDPKWKSLLARIEEGDTTSHLESQQFLLNEEIGDVIDLKAFGFGGELPALVTKAYST 166
            +Y YAT+ D KW+SLL R+E+GD T+ L+ QQFLLN+EIGD+IDL+AFGFGG LP +++KA S+
Sbjct:    1 MYNYATSTDSKWRSLLERVEKGDKTASLDMQQFLLNKEIGDLIDLEAFGFGGVLPDVLSKAISS 64
[Close]
BLAST of NO23G00010 vs. NCBI_GenBank
Match: EWM24616.1 (hypothetical protein Naga_103392g1 [Nannochloropsis gaditana])

HSP 1 Score: 82.0 bits (201), Expect = 1.900e-12
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 0 
Query:   14 MGLLRNVFVSEESHTRLLHEAWEDPEILRTLMDDLPLFDVIKPLRALKEKKTLTPR 70
            MGL+++VFV +  HTRLL EAW DPEI R L+D+LP F VIKPLRAL+EKK L+P+
Sbjct:    1 MGLMQDVFVRDPEHTRLLQEAWADPEIFRYLVDELPFFSVIKPLRALREKKVLSPQ 56
The following BLAST results are available for this feature:
BLAST of NO23G00010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
XP_005854650.14.000e-2639.58hypothetical protein NGA_0195700 [Nannochloropsis ... [more]
EWM24065.15.400e-1531.85hypothetical protein Naga_100063g14 [Nannochlorops... [more]
EWM20107.19.200e-1562.50hypothetical protein Naga_101770g1 [Nannochloropsi... [more]
EWM24616.11.900e-1266.07hypothetical protein Naga_103392g1 [Nannochloropsi... [more]
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Relationships

The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00010.1NO23G00010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00010.1NO23G00010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00010 ID=NO23G00010|Name=NO23G00010|organism=Nannochloropsis oceanica|type=gene|length=762bp
ATGGGGGGGACACCTTGTACAACTCTTGACACTGACTTGATGGGCCTCTT
GCGCAATGTCTTTGTGTCAGAAGAGAGTCATACGCGGCTATTGCATGAAG
CGTGGGAAGATCCTGAAATTCTCCGTACCCTCATGGATGACCTGCCTCTA
TTCGATGTGATTAAGCCTTTGCGAGCGCTCAAGGAGAAGAAGACTTTGAC
GCCTAGATATgtaagtgtgataaaattaaatgggcgagtgcattgatagg
gataaagacgcttagaggtactcggcacttgatgctatattcaaatcaaa
cctccacacaccacagGGATTCGATGCTGTGCTGGCTCTCAAAGATACCA
TGGGCAAGCTTCTTGCCTCATTGCAGAGCATCCGTGATCCTGAAAATTTT
GCTGAAACGATTTATAAATATGCTACCAACGAGGATCCAAAGTGGAAGTC
TCTGTTGGCACGTATCGAAGAAGGAGACACTACATCTCATTTGGAGTCCC
AGCAATTTCTTTTGAATGAGGAAATTGGAGACGgtaagtaatgagagtaa
tatgcgcacatgcatatacttgtaatattcacggcagcttctttttctgt
ctcattcttcgtccgttgtatgttgcagctatcgaatacagtttttctga
gtcatatatacatattcaacccatgccagTCATTGACCTTAAAGCTTTCG
GCTTTGGTGGAGAATTGCCTGCCTTAGTGACGAAAGCCTATTCAACCCAT
GCCAGTCGTTGA
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protein sequence of NO23G00010.1

>NO23G00010.1-protein ID=NO23G00010.1-protein|Name=NO23G00010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MGGTPCTTLDTDLMGLLRNVFVSEESHTRLLHEAWEDPEILRTLMDDLPL
FDVIKPLRALKEKKTLTPRYGFDAVLALKDTMGKLLASLQSIRDPENFAE
TIYKYATNEDPKWKSLLARIEEGDTTSHLESQQFLLNEEIGDVIDLKAFG
FGGELPALVTKAYSTHASR*
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Synonyms
Publications