NO23G00010.1, NO23G00010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00010.1
Unique NameNO23G00010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length510
Alignment locationchr23:2340..3101 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:2340..3101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G00010.1 vs.
Match: XP_005854650.1 (hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526]; EKU21707.1 hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 127.5 bits (319), Expect = 4.000e-26
Identity = 57/144 (39.58%), Postives = 91/144 (63.19%), Query Frame = 0 
Query:   22 VSEESHTRLLHEAWEDPEILRTLMDDLPLFDVIKPLRALKEKKTLTPRYGFDAVLALKDTMGKLLASLQSIRDPENFAETIYKYATNEDPKWKSLLARIEEGDTTSHLESQQFLLNEEIGDVIDLKAFGFGGELPALVTKAYST 166
            ++ ++H   L   W DP + R L D  P     KPLR L  K+ LTP+ G DAV   K+ M K+LA+++++RDPE  A  ++ Y+  +DP+W SL+AR++ G+  + LE QQ++L+ E+G +IDL   GF G+ P+++ +A  T
Sbjct:    2 LTNKAHVDELKATWSDPVVFRFLRDQTPFLKAFKPLRPLFSKEALTPQDGVDAVETFKNAMLKVLATIEAVRDPEGMATLMFNYSNLQDPEWVSLIARLQAGEKEAQLELQQYILDRELGGLIDLNEMGFDGQEPSILKEARET 145
The following BLAST results are available for this feature:
BLAST of NO23G00010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854650.14.000e-2639.58hypothetical protein NGA_0195700 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00010NO23G00010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00010.1NO23G00010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00010.1.cds1NO23G00010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00010.1.cds2NO23G00010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00010.1.cds3NO23G00010.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00010.1 ID=NO23G00010.1|Name=NO23G00010.1|organism=Nannochloropsis oceanica|type=mRNA|length=510bp
ATGGGGGGGACACCTTGTACAACTCTTGACACTGACTTGATGGGCCTCTT
GCGCAATGTCTTTGTGTCAGAAGAGAGTCATACGCGGCTATTGCATGAAG
CGTGGGAAGATCCTGAAATTCTCCGTACCCTCATGGATGACCTGCCTCTA
TTCGATGTGATTAAGCCTTTGCGAGCGCTCAAGGAGAAGAAGACTTTGAC
GCCTAGATATGGATTCGATGCTGTGCTGGCTCTCAAAGATACCATGGGCA
AGCTTCTTGCCTCATTGCAGAGCATCCGTGATCCTGAAAATTTTGCTGAA
ACGATTTATAAATATGCTACCAACGAGGATCCAAAGTGGAAGTCTCTGTT
GGCACGTATCGAAGAAGGAGACACTACATCTCATTTGGAGTCCCAGCAAT
TTCTTTTGAATGAGGAAATTGGAGACGTCATTGACCTTAAAGCTTTCGGC
TTTGGTGGAGAATTGCCTGCCTTAGTGACGAAAGCCTATTCAACCCATGC
CAGTCGTTGA
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protein sequence of NO23G00010.1

>NO23G00010.1-protein ID=NO23G00010.1-protein|Name=NO23G00010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MGGTPCTTLDTDLMGLLRNVFVSEESHTRLLHEAWEDPEILRTLMDDLPL
FDVIKPLRALKEKKTLTPRYGFDAVLALKDTMGKLLASLQSIRDPENFAE
TIYKYATNEDPKWKSLLARIEEGDTTSHLESQQFLLNEEIGDVIDLKAFG
FGGELPALVTKAYSTHASR*
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mRNA from alignment at chr23:2340..3101-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00010.1 ID=NO23G00010.1|Name=NO23G00010.1|organism=Nannochloropsis oceanica|type=mRNA|length=762bp|location=Sequence derived from alignment at chr23:2340..3101- (Nannochloropsis oceanica)
ATGGGGGGGACACCTTGTACAACTCTTGACACTGACTTGATGGGCCTCTT
GCGCAATGTCTTTGTGTCAGAAGAGAGTCATACGCGGCTATTGCATGAAG
CGTGGGAAGATCCTGAAATTCTCCGTACCCTCATGGATGACCTGCCTCTA
TTCGATGTGATTAAGCCTTTGCGAGCGCTCAAGGAGAAGAAGACTTTGAC
GCCTAGATATGTAAGTGTGATAAAATTAAATGGGCGAGTGCATTGATAGG
GATAAAGACGCTTAGAGGTACTCGGCACTTGATGCTATATTCAAATCAAA
CCTCCACACACCACAGGGATTCGATGCTGTGCTGGCTCTCAAAGATACCA
TGGGCAAGCTTCTTGCCTCATTGCAGAGCATCCGTGATCCTGAAAATTTT
GCTGAAACGATTTATAAATATGCTACCAACGAGGATCCAAAGTGGAAGTC
TCTGTTGGCACGTATCGAAGAAGGAGACACTACATCTCATTTGGAGTCCC
AGCAATTTCTTTTGAATGAGGAAATTGGAGACGGTAAGTAATGAGAGTAA
TATGCGCACATGCATATACTTGTAATATTCACGGCAGCTTCTTTTTCTGT
CTCATTCTTCGTCCGTTGTATGTTGCAGCTATCGAATACAGTTTTTCTGA
GTCATATATACATATTCAACCCATGCCAGTCATTGACCTTAAAGCTTTCG
GCTTTGGTGGAGAATTGCCTGCCTTAGTGACGAAAGCCTATTCAACCCAT
GCCAGTCGTTGA
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Coding sequence (CDS) from alignment at chr23:2340..3101-

>NO23G00010.1 ID=NO23G00010.1|Name=NO23G00010.1|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at chr23:2340..3101- (Nannochloropsis oceanica)
ATGGGGGGGACACCTTGTACAACTCTTGACACTGACTTGATGGGCCTCTT
GCGCAATGTCTTTGTGTCAGAAGAGAGTCATACGCGGCTATTGCATGAAG
CGTGGGAAGATCCTGAAATTCTCCGTACCCTCATGGATGACCTGCCTCTA
TTCGATGTGATTAAGCCTTTGCGAGCGCTCAAGGAGAAGAAGACTTTGAC
GCCTAGATATGGATTCGATGCTGTGCTGGCTCTCAAAGATACCATGGGCA
AGCTTCTTGCCTCATTGCAGAGCATCCGTGATCCTGAAAATTTTGCTGAA
ACGATTTATAAATATGCTACCAACGAGGATCCAAAGTGGAAGTCTCTGTT
GGCACGTATCGAAGAAGGAGACACTACATCTCATTTGGAGTCCCAGCAAT
TTCTTTTGAATGAGGAAATTGGAGACGTCATTGACCTTAAAGCTTTCGGC
TTTGGTGGAGAATTGCCTGCCTTAGTGACGAAAGCCTATTCAACCCATGC
CAGTCGTTGA
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Synonyms
Publications