NO18G02590, NO18G02590 (gene) Nannochloropsis oceanica

Overview
NameNO18G02590
Unique NameNO18G02590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1988
Alignment locationchr18:843677..845664 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:843677..845664 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO18G02590 vs. NCBI_GenBank
Match: EWM22005.1 (hypothetical protein Naga_100353g3 [Nannochloropsis gaditana])

HSP 1 Score: 113.2 bits (282), Expect = 8.800e-22
Identity = 76/189 (40.21%), Postives = 106/189 (56.08%), Query Frame = 0
Query:    1 MRRAFSLLALGITLALTAAEPAEPVLILSSIKAVDVDRANKDQWSAKGYIYDPDGLFVSAPPDAGMFAALEDGNDDFVNGVDFDAADCNALKNDRGIVCKTAGARVTAKRTNKVPKGVMIESQRNRNTTTMSSFYRLSAVFRRQEF-NNTLSSPLTAIFGISGVGEIEDSVSNCNEREGARATKFLCTP 189
            MRR  SLLALG+TLALT  +    +L L SIK  +  R NKD+WS KG + DP    VS    +G+   L D  DD ++   F A DC   KN +G  CK  GARV+  R +K PKGV +++    N+T    +Y +S  FR  +   + + SPLTA   + GVG +  ++++C+ R GA  T+  C P
Sbjct:   68 MRRGLSLLALGLTLALTTGQ----MLSLKSIKTFERTRMNKDKWSMKGNLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTASFAAGDCMVRKNSKGAKCKMMGARVSI-RASKPPKGVKVKTY---NST--GGYYSVSGSFRGVQLQEDPVISPLTAELTVQGVGTLSQTLTDCSVR-GAGTTRTTCVP 245          
BLAST of NO18G02590 vs. NCBI_GenBank
Match: EWM30036.1 (hypothetical protein Naga_100179g1 [Nannochloropsis gaditana])

HSP 1 Score: 107.5 bits (267), Expect = 4.800e-20
Identity = 71/196 (36.22%), Postives = 107/196 (54.59%), Query Frame = 0
Query:    1 MRRAFSLLALGITLALTAAEPAEPVLILSSIKAVDVDRANKDQWSAKGYIYDPDGLFVSAPPDAGMFAALEDGNDDFVNGVDFDAADCNALKNDRGIVCKTAGARVTAKRTNKVPKGVMIESQRNRNTTTMSSFYRLSAVFRRQEF-NNTLSSPLTAIFGISGVGEIEDS-VSNCNER-EGA-RATKFLCTPSASP 193
            MRRAF LLALGITL +TA    + +  L ++K +D  +  +DQWS KG + DP    V      G+   L+D     +    F A+DC   +N RG+ CKT GARV+ K + + PKG  ++   N N  +   +Y  S +FRR +F  + +  PLT +  +  +     + VS+C+E+ +GA R T+  CTP  +P
Sbjct:   20 MRRAFFLLALGITLVMTA---GQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRR-PKGAYVQ---NSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPGPTP 208          
BLAST of NO18G02590 vs. NCBI_GenBank
Match: XP_005855033.1 (hypothetical protein NGA_0415500 [Nannochloropsis gaditana CCMP526] >EKU21331.1 hypothetical protein NGA_0415500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 107.1 bits (266), Expect = 6.300e-20
Identity = 71/196 (36.22%), Postives = 107/196 (54.59%), Query Frame = 0
Query:    1 MRRAFSLLALGITLALTAAEPAEPVLILSSIKAVDVDRANKDQWSAKGYIYDPDGLFVSAPPDAGMFAALEDGNDDFVNGVDFDAADCNALKNDRGIVCKTAGARVTAKRTNKVPKGVMIESQRNRNTTTMSSFYRLSAVFRRQEF-NNTLSSPLTAIFGISGVGEIEDS-VSNCNER-EGA-RATKFLCTPSASP 193
            MRRAF LLALGITL +TA    + +  L ++K +D  +  +DQWS KG + DP    V      G+   L+D     +    F A+DC   +N RG+ CKT GARV+ K + + PKG  ++   N N  +   +Y  S +FRR +F  + +  PLT +  +  +     + VS+C+E+ +GA R T+  CTP  +P
Sbjct:    1 MRRAFFLLALGITLVMTA---GQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRR-PKGANVQ---NSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPGPTP 189          
BLAST of NO18G02590 vs. NCBI_GenBank
Match: EWM22002.1 (hypothetical protein Naga_100353g5 [Nannochloropsis gaditana])

HSP 1 Score: 106.3 bits (264), Expect = 1.100e-19
Identity = 72/189 (38.10%), Postives = 103/189 (54.50%), Query Frame = 0
Query:    1 MRRAFSLLALGITLALTAAEPAEPVLILSSIKAVDVDRANKDQWSAKGYIYDPDGLFVSAPPDAGMFAALEDGNDDFVNGVDFDAADCNALKNDRGIVCKTAGARVTAKRTNKVPKGVMIESQRNRNTTTMSSFYRLSAVFRRQEF-NNTLSSPLTAIFGISGVGEIEDSVSNCNEREGARATKFLCTP 189
            MRR  SLLALG+TLALT  +    +L L SIK  +  + NKD+WS K ++ DP    VS    +G+   L D  DD ++   F A DC   KN +G  CK  GARV+  R +K PKGV     ++ N+T    +Y +S  FRR +   + +  PLTA   + GVG +  +++ C+ + G +  K  C P
Sbjct:   80 MRRGLSLLALGLTLALTTGQ----MLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSI-RASKPPKGV----GKSHNST--GGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVK-GTKTRKVTCVP 256          
BLAST of NO18G02590 vs. NCBI_GenBank
Match: EWM22004.1 (hypothetical protein Naga_100353g6 [Nannochloropsis gaditana])

HSP 1 Score: 106.3 bits (264), Expect = 1.100e-19
Identity = 72/189 (38.10%), Postives = 103/189 (54.50%), Query Frame = 0
Query:    1 MRRAFSLLALGITLALTAAEPAEPVLILSSIKAVDVDRANKDQWSAKGYIYDPDGLFVSAPPDAGMFAALEDGNDDFVNGVDFDAADCNALKNDRGIVCKTAGARVTAKRTNKVPKGVMIESQRNRNTTTMSSFYRLSAVFRRQEF-NNTLSSPLTAIFGISGVGEIEDSVSNCNEREGARATKFLCTP 189
            MRR  SLLALG+TLALT  +    +L L SIK  +  + NKD+WS K ++ DP    VS    +G+   L D  DD ++   F A DC   KN +G  CK  GARV+  R +K PKGV     ++ N+T    +Y +S  FRR +   + +  PLTA   + GVG +  +++ C+ + G +  K  C P
Sbjct:   11 MRRGLSLLALGLTLALTTGQ----MLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSI-RASKPPKGV----GKSHNST--GGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVK-GTKTRKVTCVP 187          
BLAST of NO18G02590 vs. NCBI_GenBank
Match: EWM30045.1 (hypothetical protein Naga_101600g1 [Nannochloropsis gaditana])

HSP 1 Score: 102.8 bits (255), Expect = 1.200e-18
Identity = 73/195 (37.44%), Postives = 107/195 (54.87%), Query Frame = 0
Query:    1 MRRAFSLLALGITLALTAAEPAEPVLILSSIKAVDVDRANKDQWSAKGYIYDPDGLFVSAPPDAGMFAALEDGNDDFVNGVDFDAADCNALKNDRGIVCKTAGARVTAKRTNKVPKGVMIESQRNRNTTTMSSFYRLSAVFRRQEF-NNTLSSPLTAIFGISGVGEIEDSVSNCNER-EGA-RATKFLCTPSASP 193
            MRR  SLLALG+TL +TA +       L ++K  +  +  +DQWS KG + +P    V A    G+   L D + D +    F A +C  L+N RG+ CK  GARV+ KRT + PKG  ++S    N+ +   +Y  S +FRR +F  + + +PLT +  + G   +   VS C+ER +GA R TK  CTP  +P
Sbjct:    1 MRRILSLLALGVTLVMTAGQE----FTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRR-PKGAKVKSS---NSNSTGGYYGASGMFRRLQFLQDPVVTPLT-VQVVVGSTTLPAIVSTCSERTKGAGRITKITCTPGPAP 186          
BLAST of NO18G02590 vs. NCBI_GenBank
Match: XP_005852576.1 (hypothetical protein NGA_0721300 [Nannochloropsis gaditana CCMP526] >EKU23255.1 hypothetical protein NGA_0721300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 100.9 bits (250), Expect = 4.500e-18
Identity = 70/189 (37.04%), Postives = 102/189 (53.97%), Query Frame = 0
Query:    1 MRRAFSLLALGITLALTAAEPAEPVLILSSIKAVDVDRANKDQWSAKGYIYDPDGLFVSAPPDAGMFAALEDGNDDFVNGVDFDAADCNALKNDRGIVCKTAGARVTAKRTNKVPKGVMIESQRNRNTTTMSSFYRLSAVFRRQEF-NNTLSSPLTAIFGISGVGEIEDSVSNCNEREGARATKFLCTP 189
            MRR  SLLALG+TLALT  +    +L L SIK  +  + NKD+WS KG++ DP    VS     G+   L D   D ++   F A DC   K+ +G  CK  GARV+  R +K PKGV     ++ N+T    ++ +S  FRR +   + +  PLTA   + GVG +  +++ C+ + G +  K  C P
Sbjct:    1 MRRGLSLLALGLTLALTTGQ----MLSLKSIKTFERTQMNKDKWSMKGHLEDPTLAVVSGIGTNGLTVTLLDMAADTLDTASFAAGDCMVRKSSKGARCKMMGARVSI-RASKPPKGV----GKSHNST--GGYFSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVK-GTKTRKVTCVP 177          
BLAST of NO18G02590 vs. NCBI_GenBank
Match: EWM20521.1 (hypothetical protein Naga_100335g8, partial [Nannochloropsis gaditana])

HSP 1 Score: 100.5 bits (249), Expect = 5.900e-18
Identity = 72/191 (37.70%), Postives = 99/191 (51.83%), Query Frame = 0
Query:    1 MRRAFSLLALGITLALTAAEPAEPVLILSSIKAVDVDRANKDQWSAKGYIYDPDGLFVSAPPDAGMFAALEDGNDDFVNGVDFDAADCNALKNDRGIVCKTAGARVTAKRTNKVPKGVMIESQRNRNTTTMSSFYRLSAVFRRQEF-NNTLSSPLTAIFGISGVGEIEDSVSNCNE--REGARATKFLCTP 189
            MR   SLLALGITL  T    A   L L SI+AVD    NKD W  KG I DP   FV A    G+   L+D   D +N V F A+DC    + R   CK  GARV+ KR+ + PK    ++   ++  +   +Y ++  FR   F  N + SPLTA   ++G   + D++ +C +  R+ AR+T   C P
Sbjct:    1 MRSPLSLLALGITLGSTLVTTAGQDLNLKSIRAVDRSVTNKDTWKMKGNINDPSLTFVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRAACKIRGARVSIKRSRR-PKIKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRVNG-SVLSDTLISCYDLARKSARSTISQCEP 189          
BLAST of NO18G02590 vs. NCBI_GenBank
Match: EWM20135.1 (hypothetical protein Naga_101626g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 93.6 bits (231), Expect = 7.200e-16
Identity = 69/192 (35.94%), Postives = 98/192 (51.04%), Query Frame = 0
Query:    1 MRRAFSLLALGITLALTAAEPAEPVLILSSIKAVDVDRANKDQWSAKGYIYDPDGLFVSAPPDAGMFAALEDGNDDFVNGVDFDAADCNALKNDRGIVCKTAGARVTAKRTNKVPKGVMIESQRNRNTTTMSSFYRLSAVFRRQEF-NNTLSSPLTAIFGISGVGEIEDSVSNCNER--EGARATKFLCTPS 190
            MR   SLLALGITL +TA +       L +IK     +  +DQWS KG + +P    V     +G+   L D +   +    F A +C  L+N RG+ CK+ GARV  KRT + PK   ++S    +T     +Y  S +FRR +F  +T+ +PLT    + G   +   VS C+ER     R TK  CTP+
Sbjct:    1 MRCILSLLALGITLVMTAGQE----FTLKNIKVAGRFKTARDQWSMKGNLDNPTMNVVPVIGQSGLTVNLLDASLSPLASAAFAATNCKLLRNARGVSCKSMGARVYIKRTRR-PKAAKVKSSSYNST---GGYYAASGMFRRLQFLQDTVVTPLTVQL-VVGTTTLPAIVSTCSERTKSAGRITKITCTPT 183          
BLAST of NO18G02590 vs. NCBI_GenBank
Match: EWM20775.1 (hypothetical protein Naga_100549g2 [Nannochloropsis gaditana])

HSP 1 Score: 93.6 bits (231), Expect = 7.200e-16
Identity = 68/191 (35.60%), Postives = 95/191 (49.74%), Query Frame = 0
Query:    1 MRRAFSLLALGITLALTAAEPAEPVLILSSIKAVDVDRANKDQWSAKGYIYDPDGLFVSAPPDAGMFAALEDGNDDFVNGVDFDAADCNALKNDRGIVCKTAGARVTAKRTNKVPKGVMIESQRNRNTTTMSSFYRLSAVFRRQEF-NNTLSSPLTAIFGISGVGEIEDSVSNCNE--REGARATKFLCTP 189
            MR AFS LA+GIT   +    A   L L SI+AVD   ANKD W  KG I DP    V      G+   L+DG  D +N V F A+DC    N R   CK  GARV+ K + + PK    ++   +   +   +YR++   R   F  + + SPLTA   ++G   + D++++C +  R   R T   C P
Sbjct:    1 MRSAFSFLAVGITFGSSLVTTAGQDLNLKSIRAVDRSVANKDTWKMKGKIDDPSMTIVPEIAQTGLIVELQDGGSDPLNTVTFAASDCRVPTNGRRATCKIRGARVSIKSSRR-PKLKTPKTVHAKTYNSTGGYYRVTGACRGLTFLEDLVLSPLTAKLTVNG-DVLSDTLTSCYDLPRMNGRNTITHCEP 189          
The following BLAST results are available for this feature:
BLAST of NO18G02590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 14
Match NameE-valueIdentityDescription
EWM22005.18.800e-2240.21hypothetical protein Naga_100353g3 [Nannochloropsi... [more]
EWM30036.14.800e-2036.22hypothetical protein Naga_100179g1 [Nannochloropsi... [more]
XP_005855033.16.300e-2036.22hypothetical protein NGA_0415500 [Nannochloropsis ... [more]
EWM22002.11.100e-1938.10hypothetical protein Naga_100353g5 [Nannochloropsi... [more]
EWM22004.11.100e-1938.10hypothetical protein Naga_100353g6 [Nannochloropsi... [more]
EWM30045.11.200e-1837.44hypothetical protein Naga_101600g1 [Nannochloropsi... [more]
XP_005852576.14.500e-1837.04hypothetical protein NGA_0721300 [Nannochloropsis ... [more]
EWM20521.15.900e-1837.70hypothetical protein Naga_100335g8, partial [Nanno... [more]
EWM20135.17.200e-1635.94hypothetical protein Naga_101626g1, partial [Nanno... [more]
EWM20775.17.200e-1635.60hypothetical protein Naga_100549g2 [Nannochloropsi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL011nonsL011Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL010nonsL010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR094ncniR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR042ngnoR042Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02590.1NO18G02590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02590.1NO18G02590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02590 ID=NO18G02590|Name=NO18G02590|organism=Nannochloropsis oceanica|type=gene|length=1988bp
AAAAAAACCAAAAACCACAAAAAAAAACCAAAAACCACAAAAAAACCAAA
AACCACATAAAACAGGAAACTACAAAAAATGCAAACACTACAAACACAAA
GCAATAGCTAAATCCTCATTCTCAATCGTCTGTTTGTATGTTGACCCACA
CACAATATGTTCTCTCTGTAAACTATGGTTGTCCTTTTTTATGGGCCATG
GCATCCAACGCCTTGCCGGACGCATACGGCGCCATCTTCCGCACATTTAC
TGCGGCAGTCAGCCGTGGATCTCCCCTTCCCTTGTGTTTACGGTGCAAGG
CAGGGATATTCTCCCCCTCGCCTTTCCTTTCTCAGTGCCACCCGTCTGTT
TGAGGTACTGTAATCGACGTGTGGTATTGCTTGGGGTGTGTTGCCGTGCA
AGGGGCCCATGTAGCGGCCGCGCTCCCCCACCACCCAGAGTTTGCCATCT
GTTTGTCCCCCTCCGCACTCTGCGAATACCCGTGCCCTCTTTTCCTCCTC
CCGTCCTCCTTCTTTCTACTCCTCCTTGCAAATTTTCCCACCTTCATGTC
CATCCTTCCCATTCTCTCTCCCTCACTCCATTTCCTTCCGTCCTATTTAT
TATGTCTTCCCTCCTTTCTTCCCCTATCTCTCCCCCTCCACCATCCAATT
TATCGCCTCCCTTTCTCAAAGCTTTCGTTCCTTCCTTTTCCCTTTTTCCC
GCTCTCTCCTCTTTCTCTCTCCCTCTTTCATCCTCAGTTTGATCCGACAC
TCACTCTCCTCTTTTCCTCCCCTTTCTTCTTTCTCCTCTTTTCTTCACCT
CCATCCTCTCCTCCCATTCTGTTTCTCGTCCTTCGCTTTTCTCCCGTGTC
TATTATCCTACTGCTCTTTTTATTACTGCTCTTTACATCATCTGCCCGAC
ATTTTCGTATTCCTGCCGCGGCCTGACTGTGCCATTCAATTGACCTGCGT
CCCACGTCAGACATTGCACGCTTTCACACTTCTCACTTTAAGCACTCACC
TACGTCTATTCTATACCTCGCACCAACACAGCAAATAAGTTATACACCAT
GCGTCGCGCTTTTTCACTGCTTGCCCTCGGTATCACCCTCGCCTTGACGG
CAGCTGAGCCGGCTGAGCCGGTGTTGATCCTCTCCTCCATCAAGGCCGTC
GACGTGGACAGGGCGAACAAGGACCAATGGAGTGCTAAGGGCTATATCTA
TGACCCTGACGGGCTTTTTGTCTCGGCCCCTCCAGACGCTGGCATGTTTG
CGGCGCTTGAAGACGGGAATGACGATTTCGTGAACGGCGTGGACTTCGAC
GCAGCTGATTGCAATGCACTCAAAAACGATAGGGGAATCGTTTGTAAAAC
TGCGGGCGCCCGTGTCACGGCCAAGAGAACCAATAAGGTGCCGAAGGGTG
TTATGATCGAGTCGCAGAGGAACCGCAACACGACCACCATGTCTTCCTTC
TACAGGTTGTCGGCTGTTTTCCGCCGACAGGAGTTCAATAACACTCTGTC
GTCGCCTCTGACGGCTATCTTCGGTATTTCTGGCGTCGGTGAGATTGAAG
ACAGCGTCTCGAATTGCAATGAGAGGGAAGGAGCCAGGGCGACCAAGTTC
CTCTGCACTCCCTCCGCCAGCCCCTAGGCGCCATCTCATGGCCATTGGGC
GTCTAGTTGACATCACACTCTTTGGCCACGAGAGCTCTAGGTCCTGCGCA
TTACATGTTTATCTGTGACTTCGTCTTGTATGTTCGCACTCAGCCTGGAA
GCTCCGGCTTTCGTTCCTGACGCGTTGGTTTGTCTTTGTGCCTGAGAGTG
GTTTCTGTGTCAGTGCAGTGTTGTATCGTGTATGTGTGTATCTTCTTACT
CTAACACTACTTGTGTTATGTGCTTGTATTTCCAGGACCAGGCCACGGAG
TCTGACCATTGTAGCCAAAGGATTCATTCTATCGATTTGTAAGAAGAAAG
AAATGCCTTTAGGAGGCGATTATATATGTAAAGAGCTG
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protein sequence of NO18G02590.1

>NO18G02590.1-protein ID=NO18G02590.1-protein|Name=NO18G02590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MRRAFSLLALGITLALTAAEPAEPVLILSSIKAVDVDRANKDQWSAKGYI
YDPDGLFVSAPPDAGMFAALEDGNDDFVNGVDFDAADCNALKNDRGIVCK
TAGARVTAKRTNKVPKGVMIESQRNRNTTTMSSFYRLSAVFRRQEFNNTL
SSPLTAIFGISGVGEIEDSVSNCNEREGARATKFLCTPSASP*
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Synonyms
Publications