NO18G02590.1, NO18G02590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G02590.1
Unique NameNO18G02590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1988
Alignment locationchr18:843677..845664 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:843677..845664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G02590.1 vs.
Match: EWM22005.1 (hypothetical protein Naga_100353g3 [Nannochloropsis gaditana])

HSP 1 Score: 113.2 bits (282), Expect = 8.800e-22
Identity = 76/189 (40.21%), Postives = 106/189 (56.08%), Query Frame = 0 
Query:    1 MRRAFSLLALGITLALTAAEPAEPVLILSSIKAVDVDRANKDQWSAKGYIYDPDGLFVSAPPDAGMFAALEDGNDDFVNGVDFDAADCNALKNDRGIVCKTAGARVTAKRTNKVPKGVMIESQRNRNTTTMSSFYRLSAVFRRQEF-NNTLSSPLTAIFGISGVGEIEDSVSNCNEREGARATKFLCTP 189
            MRR  SLLALG+TLALT  +    +L L SIK  +  R NKD+WS KG + DP    VS    +G+   L D  DD ++   F A DC   KN +G  CK  GARV+  R +K PKGV +++    N+T    +Y +S  FR  +   + + SPLTA   + GVG +  ++++C+ R GA  T+  C P
Sbjct:   68 MRRGLSLLALGLTLALTTGQ----MLSLKSIKTFERTRMNKDKWSMKGNLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTASFAAGDCMVRKNSKGAKCKMMGARVSI-RASKPPKGVKVKTY---NST--GGYYSVSGSFRGVQLQEDPVISPLTAELTVQGVGTLSQTLTDCSVR-GAGTTRTTCVP 245
The following BLAST results are available for this feature:
BLAST of NO18G02590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22005.18.800e-2240.21hypothetical protein Naga_100353g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G02590NO18G02590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G02590.1NO18G02590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G02590.1.cds1NO18G02590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G02590.1 ID=NO18G02590.1|Name=NO18G02590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1988bp
AAAAAAACCAAAAACCACAAAAAAAAACCAAAAACCACAAAAAAACCAAA
AACCACATAAAACAGGAAACTACAAAAAATGCAAACACTACAAACACAAA
GCAATAGCTAAATCCTCATTCTCAATCGTCTGTTTGTATGTTGACCCACA
CACAATATGTTCTCTCTGTAAACTATGGTTGTCCTTTTTTATGGGCCATG
GCATCCAACGCCTTGCCGGACGCATACGGCGCCATCTTCCGCACATTTAC
TGCGGCAGTCAGCCGTGGATCTCCCCTTCCCTTGTGTTTACGGTGCAAGG
CAGGGATATTCTCCCCCTCGCCTTTCCTTTCTCAGTGCCACCCGTCTGTT
TGAGGTACTGTAATCGACGTGTGGTATTGCTTGGGGTGTGTTGCCGTGCA
AGGGGCCCATGTAGCGGCCGCGCTCCCCCACCACCCAGAGTTTGCCATCT
GTTTGTCCCCCTCCGCACTCTGCGAATACCCGTGCCCTCTTTTCCTCCTC
CCGTCCTCCTTCTTTCTACTCCTCCTTGCAAATTTTCCCACCTTCATGTC
CATCCTTCCCATTCTCTCTCCCTCACTCCATTTCCTTCCGTCCTATTTAT
TATGTCTTCCCTCCTTTCTTCCCCTATCTCTCCCCCTCCACCATCCAATT
TATCGCCTCCCTTTCTCAAAGCTTTCGTTCCTTCCTTTTCCCTTTTTCCC
GCTCTCTCCTCTTTCTCTCTCCCTCTTTCATCCTCAGTTTGATCCGACAC
TCACTCTCCTCTTTTCCTCCCCTTTCTTCTTTCTCCTCTTTTCTTCACCT
CCATCCTCTCCTCCCATTCTGTTTCTCGTCCTTCGCTTTTCTCCCGTGTC
TATTATCCTACTGCTCTTTTTATTACTGCTCTTTACATCATCTGCCCGAC
ATTTTCGTATTCCTGCCGCGGCCTGACTGTGCCATTCAATTGACCTGCGT
CCCACGTCAGACATTGCACGCTTTCACACTTCTCACTTTAAGCACTCACC
TACGTCTATTCTATACCTCGCACCAACACAGCAAATAAGTTATACACCAT
GCGTCGCGCTTTTTCACTGCTTGCCCTCGGTATCACCCTCGCCTTGACGG
CAGCTGAGCCGGCTGAGCCGGTGTTGATCCTCTCCTCCATCAAGGCCGTC
GACGTGGACAGGGCGAACAAGGACCAATGGAGTGCTAAGGGCTATATCTA
TGACCCTGACGGGCTTTTTGTCTCGGCCCCTCCAGACGCTGGCATGTTTG
CGGCGCTTGAAGACGGGAATGACGATTTCGTGAACGGCGTGGACTTCGAC
GCAGCTGATTGCAATGCACTCAAAAACGATAGGGGAATCGTTTGTAAAAC
TGCGGGCGCCCGTGTCACGGCCAAGAGAACCAATAAGGTGCCGAAGGGTG
TTATGATCGAGTCGCAGAGGAACCGCAACACGACCACCATGTCTTCCTTC
TACAGGTTGTCGGCTGTTTTCCGCCGACAGGAGTTCAATAACACTCTGTC
GTCGCCTCTGACGGCTATCTTCGGTATTTCTGGCGTCGGTGAGATTGAAG
ACAGCGTCTCGAATTGCAATGAGAGGGAAGGAGCCAGGGCGACCAAGTTC
CTCTGCACTCCCTCCGCCAGCCCCTAGGCGCCATCTCATGGCCATTGGGC
GTCTAGTTGACATCACACTCTTTGGCCACGAGAGCTCTAGGTCCTGCGCA
TTACATGTTTATCTGTGACTTCGTCTTGTATGTTCGCACTCAGCCTGGAA
GCTCCGGCTTTCGTTCCTGACGCGTTGGTTTGTCTTTGTGCCTGAGAGTG
GTTTCTGTGTCAGTGCAGTGTTGTATCGTGTATGTGTGTATCTTCTTACT
CTAACACTACTTGTGTTATGTGCTTGTATTTCCAGGACCAGGCCACGGAG
TCTGACCATTGTAGCCAAAGGATTCATTCTATCGATTTGTAAGAAGAAAG
AAATGCCTTTAGGAGGCGATTATATATGTAAAGAGCTG
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protein sequence of NO18G02590.1

>NO18G02590.1-protein ID=NO18G02590.1-protein|Name=NO18G02590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MRRAFSLLALGITLALTAAEPAEPVLILSSIKAVDVDRANKDQWSAKGYI
YDPDGLFVSAPPDAGMFAALEDGNDDFVNGVDFDAADCNALKNDRGIVCK
TAGARVTAKRTNKVPKGVMIESQRNRNTTTMSSFYRLSAVFRRQEFNNTL
SSPLTAIFGISGVGEIEDSVSNCNEREGARATKFLCTPSASP*
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mRNA from alignment at chr18:843677..845664+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02590.1 ID=NO18G02590.1|Name=NO18G02590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1988bp|location=Sequence derived from alignment at chr18:843677..845664+ (Nannochloropsis oceanica)
AAAAAAACCAAAAACCACAAAAAAAAACCAAAAACCACAAAAAAACCAAA
AACCACATAAAACAGGAAACTACAAAAAATGCAAACACTACAAACACAAA
GCAATAGCTAAATCCTCATTCTCAATCGTCTGTTTGTATGTTGACCCACA
CACAATATGTTCTCTCTGTAAACTATGGTTGTCCTTTTTTATGGGCCATG
GCATCCAACGCCTTGCCGGACGCATACGGCGCCATCTTCCGCACATTTAC
TGCGGCAGTCAGCCGTGGATCTCCCCTTCCCTTGTGTTTACGGTGCAAGG
CAGGGATATTCTCCCCCTCGCCTTTCCTTTCTCAGTGCCACCCGTCTGTT
TGAGGTACTGTAATCGACGTGTGGTATTGCTTGGGGTGTGTTGCCGTGCA
AGGGGCCCATGTAGCGGCCGCGCTCCCCCACCACCCAGAGTTTGCCATCT
GTTTGTCCCCCTCCGCACTCTGCGAATACCCGTGCCCTCTTTTCCTCCTC
CCGTCCTCCTTCTTTCTACTCCTCCTTGCAAATTTTCCCACCTTCATGTC
CATCCTTCCCATTCTCTCTCCCTCACTCCATTTCCTTCCGTCCTATTTAT
TATGTCTTCCCTCCTTTCTTCCCCTATCTCTCCCCCTCCACCATCCAATT
TATCGCCTCCCTTTCTCAAAGCTTTCGTTCCTTCCTTTTCCCTTTTTCCC
GCTCTCTCCTCTTTCTCTCTCCCTCTTTCATCCTCAGTTTGATCCGACAC
TCACTCTCCTCTTTTCCTCCCCTTTCTTCTTTCTCCTCTTTTCTTCACCT
CCATCCTCTCCTCCCATTCTGTTTCTCGTCCTTCGCTTTTCTCCCGTGTC
TATTATCCTACTGCTCTTTTTATTACTGCTCTTTACATCATCTGCCCGAC
ATTTTCGTATTCCTGCCGCGGCCTGACTGTGCCATTCAATTGACCTGCGT
CCCACGTCAGACATTGCACGCTTTCACACTTCTCACTTTAAGCACTCACC
TACGTCTATTCTATACCTCGCACCAACACAGCAAATAAGTTATACACCAT
GCGTCGCGCTTTTTCACTGCTTGCCCTCGGTATCACCCTCGCCTTGACGG
CAGCTGAGCCGGCTGAGCCGGTGTTGATCCTCTCCTCCATCAAGGCCGTC
GACGTGGACAGGGCGAACAAGGACCAATGGAGTGCTAAGGGCTATATCTA
TGACCCTGACGGGCTTTTTGTCTCGGCCCCTCCAGACGCTGGCATGTTTG
CGGCGCTTGAAGACGGGAATGACGATTTCGTGAACGGCGTGGACTTCGAC
GCAGCTGATTGCAATGCACTCAAAAACGATAGGGGAATCGTTTGTAAAAC
TGCGGGCGCCCGTGTCACGGCCAAGAGAACCAATAAGGTGCCGAAGGGTG
TTATGATCGAGTCGCAGAGGAACCGCAACACGACCACCATGTCTTCCTTC
TACAGGTTGTCGGCTGTTTTCCGCCGACAGGAGTTCAATAACACTCTGTC
GTCGCCTCTGACGGCTATCTTCGGTATTTCTGGCGTCGGTGAGATTGAAG
ACAGCGTCTCGAATTGCAATGAGAGGGAAGGAGCCAGGGCGACCAAGTTC
CTCTGCACTCCCTCCGCCAGCCCCTAGGCGCCATCTCATGGCCATTGGGC
GTCTAGTTGACATCACACTCTTTGGCCACGAGAGCTCTAGGTCCTGCGCA
TTACATGTTTATCTGTGACTTCGTCTTGTATGTTCGCACTCAGCCTGGAA
GCTCCGGCTTTCGTTCCTGACGCGTTGGTTTGTCTTTGTGCCTGAGAGTG
GTTTCTGTGTCAGTGCAGTGTTGTATCGTGTATGTGTGTATCTTCTTACT
CTAACACTACTTGTGTTATGTGCTTGTATTTCCAGGACCAGGCCACGGAG
TCTGACCATTGTAGCCAAAGGATTCATTCTATCGATTTGTAAGAAGAAAG
AAATGCCTTTAGGAGGCGATTATATATGTAAAGAGCTG
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Coding sequence (CDS) from alignment at chr18:843677..845664+

>NO18G02590.1 ID=NO18G02590.1|Name=NO18G02590.1|organism=Nannochloropsis oceanica|type=CDS|length=579bp|location=Sequence derived from alignment at chr18:843677..845664+ (Nannochloropsis oceanica)
ATGCGTCGCGCTTTTTCACTGCTTGCCCTCGGTATCACCCTCGCCTTGAC
GGCAGCTGAGCCGGCTGAGCCGGTGTTGATCCTCTCCTCCATCAAGGCCG
TCGACGTGGACAGGGCGAACAAGGACCAATGGAGTGCTAAGGGCTATATC
TATGACCCTGACGGGCTTTTTGTCTCGGCCCCTCCAGACGCTGGCATGTT
TGCGGCGCTTGAAGACGGGAATGACGATTTCGTGAACGGCGTGGACTTCG
ACGCAGCTGATTGCAATGCACTCAAAAACGATAGGGGAATCGTTTGTAAA
ACTGCGGGCGCCCGTGTCACGGCCAAGAGAACCAATAAGGTGCCGAAGGG
TGTTATGATCGAGTCGCAGAGGAACCGCAACACGACCACCATGTCTTCCT
TCTACAGGTTGTCGGCTGTTTTCCGCCGACAGGAGTTCAATAACACTCTG
TCGTCGCCTCTGACGGCTATCTTCGGTATTTCTGGCGTCGGTGAGATTGA
AGACAGCGTCTCGAATTGCAATGAGAGGGAAGGAGCCAGGGCGACCAAGT
TCCTCTGCACTCCCTCCGCCAGCCCCTAG
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Synonyms
Publications