NO14G02090, NO14G02090 (gene) Nannochloropsis oceanica

Overview
NameNO14G02090
Unique NameNO14G02090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2263
Alignment locationchr14:631219..633481 +

Link to JBrowse

Properties
Property NameValue
DescriptionSyntaxin-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:631219..633481 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR010989t-SNARE
IPR000727T_SNARE_dom
IPR010482Peroxin/Dysferlin
IPR006614Peroxin/Ferlin
Homology
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BLAST of NO14G02090 vs. NCBI_GenBank
Match: EWM24582.1 (syntaxin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 105.1 bits (261), Expect = 6.200e-19
Identity = 55/75 (73.33%), Postives = 63/75 (84.00%), Query Frame = 0 
Query:  423 MLALALERELAINEVTMHLVELRNVFQEFAQLVSEQQEGIDAVCRNAEDAHARTEEGYNAILKAKEGQK-ETTGC 497
            MLALA ERELAI EVT HLVEL++VF +FA+LV  QQEG+DAVCRN E AHA+TE+GY AILKA EGQ+ ET GC
Sbjct:    1 MLALAQERELAIREVTSHLVELKDVFSDFAELVQGQQEGVDAVCRNVEVAHAKTEQGYEAILKANEGQRAETGGC 75
The following BLAST results are available for this feature:
BLAST of NO14G02090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24582.16.200e-1973.33syntaxin-like protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002425NSK002425Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02090.1NO14G02090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100062g9gene5886Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02090.1NO14G02090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02090 ID=NO14G02090|Name=NO14G02090|organism=Nannochloropsis oceanica|type=gene|length=2263bp
ACGAACGACAAATGTGAGGCTGACTGCGGCAGCGTGCATACAATTAAGAT
GTCCGCAGCAATGCGACATTGAATTGGCAGTACACATATCCACCCGGATC
GTCATCATCTGGACTACATAGTGTCACATACAAGGCAAAAGTTTTGGTAT
TGAGGCCCGCCCTGCATTCATCTTATTCGCTTGCCTTCCCCCGACCCGCA
CCGACGACCGGGTCGCTCATCAAGTATCATCACATCGTCGTATTCGAAGG
CATAATATAACGGCCCCAATTACACATTCTGCGTGATTCGAAACAGTCCA
CTGACCGCACGACCACAACGCATAACACTGCAATAACATAACGAAGCGAA
TCTTGAGCCACTGCGAGCTTCCCCCCTGCGGGGTCTTCCCCTCCCCCTCC
ACAGCCATCGTCAACTTGCTTGCCTTGTGGGCCTGCCTCTCCCTCTCCAC
CTCCTCCTCCTCCGCAATCTAATCTGAAATGGAATGCCACGACACGCCGC
CGCCAACCCGAAGCAGCAAACTCAAAGGTTCTAATGCTGGCCGCCACGAC
AACTCAAGCGGCGGGTGGGGTACTCCTCGCCGCGCCTCTGGTGCTTCCTC
GTCCTCCTCCTCCTCCTCGCCGTCCTCCTCCCTTTCCGCCGCCGCTCCCC
CCTCCACCGGAGCCGTTTTGGTCGGGCCCCGCAGCAACCGTCAAGAGGTT
ATTGTCGAAATATACGAGCACGAGCGCTGGTCCCGTAGAGCCGATGGATG
GATCCCTTCCGGAGCCCCCCGGCGCGCGCATTGGTGTACGGCACAAGGCA
CCCCCTCCCCCGCTCCCGAAGAGATGGCCCCTCCAGCCAACTTTGGTTGG
GTCAGCAACTGGCGCGTCGACACTTCTTCATCATCTTCGGCTGCGCCACC
TAAGTCATCGTCGTCGGATTCCCCATACCCTCCTCCTTCCTCCTTCAGGG
CCCCCTCCTCCACCCCACCGCCTACCCTCCAAGATCGCCAAGGCTGGGAA
TATGCCACATCGCCGGATAAATTCCATGTTTCTGAGCGCCAACCTCGTGG
GGAAGAGCGATGGAGCGATCGCGCGCGTCGTCGTCGTTGGATCCGTCTTG
CGAAGTATAAGACATTGCTACCCGCCATGACCACCTCTGACGAGCTGGGC
AAACAAGCACAGGAAGGCCTAAAGGGGCTAGTTAGAGGGAGAAGGACAGT
GCAGGAACTCTGTAAATTAATAGGAACAAGAAGGGATTCAAAGGAGATGC
GGGAGAAGGTATTTAATTTGGTGGGCATTATTCGGCAGCACGGCAGGGAG
ATCGAGCAGGTTTTGAAAAATCTGAGGGAGAGGGAAGGAGGGAGGGAAGG
TGGCGTGGGTGGAGGTGTAAAGAAGTGGGGGAATGATTTGGGGAAAGAAC
AGAGGGTCTTTGAGGATGTTTCGAGGGAGGTGGAAAGGAAGTGTAGGAGT
GTGCCTTTGGCGGCCTTGCCTGCCGCTGTTGCTGGTGCGCCACGAGGGAC
TACAGAAGCAACAGGAGCAGCAGGAGGCGCAGGCGCAGGAGGAGCGTCAC
AGAGCAGTAGCAAATGTGGTGGGGGTGGGGGAGGGGCAGTGGCCGCTACA
GAGGGAATGGTGGTCTCGGCGGGCAGAGACTCCTTCCGTCCGTTTGTTAA
TTTGGAAGGCAAGGTCCAGGATCAGGCCCACCACCATACAGAGGAGGAGC
AAACCATACTAAAACAGCTCAAGTTTCAAGATGAAGAGGAAGTGATGCTT
GCCCTCGCGCTTGAAAGGGAGCTGGCAATCAATGAGGTGACCATGCACCT
GGTGGAATTGCGGAATGTCTTTCAGGAGTTTGCGCAGTTGGTGTCGGAGC
AACAAGAGGGCATTGATGCCGTGTGTCGGAATGCGGAGGACGCGCATGCT
CGGACGGAGGAGGGATATAATGCCATTCTGAAGGCAAAAGAAGGACAGAA
AGAAACGACAGGGTGTACGCCCTTCTAGTGAGGAGGAGGGACGAGGGAGA
AAGGATGAATTGAGTTGGCATGGTGGCGGTAATTGTGCGAGTGTAGTCTA
CGTCTCTTATGAAGATACTTTAGGAGGGCCTCAGACTGGCGGATTTGATT
CATCCGTCGTCCCTGGAAGTGGGCCGGCTGGAGGGAGGACGAGAACGAGA
GCCAAAACCAGCGAGTAGAAACACCAGCATTAAGGAGTGTAAAAGCAGCC
GTGTATGAACACATAAGAGTGTACAAAGTAAAGGCATTGAAAGAGAATGT
ACATTTTAGACCA
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protein sequence of NO14G02090.1

>NO14G02090.1-protein ID=NO14G02090.1-protein|Name=NO14G02090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MECHDTPPPTRSSKLKGSNAGRHDNSSGGWGTPRRASGASSSSSSSSPSS
SLSAAAPPSTGAVLVGPRSNRQEVIVEIYEHERWSRRADGWIPSGAPRRA
HWCTAQGTPSPAPEEMAPPANFGWVSNWRVDTSSSSSAAPPKSSSSDSPY
PPPSSFRAPSSTPPPTLQDRQGWEYATSPDKFHVSERQPRGEERWSDRAR
RRRWIRLAKYKTLLPAMTTSDELGKQAQEGLKGLVRGRRTVQELCKLIGT
RRDSKEMREKVFNLVGIIRQHGREIEQVLKNLREREGGREGGVGGGVKKW
GNDLGKEQRVFEDVSREVERKCRSVPLAALPAAVAGAPRGTTEATGAAGG
AGAGGASQSSSKCGGGGGGAVAATEGMVVSAGRDSFRPFVNLEGKVQDQA
HHHTEEEQTILKQLKFQDEEEVMLALALERELAINEVTMHLVELRNVFQE
FAQLVSEQQEGIDAVCRNAEDAHARTEEGYNAILKAKEGQKETTGCTPF*
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Synonyms
Publications