NO14G02090.1, NO14G02090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02090.1
Unique NameNO14G02090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2263
Alignment locationchr14:631219..633481 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:631219..633481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO14G02090.1 vs.
Match: EWM24582.1 (syntaxin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 105.1 bits (261), Expect = 6.200e-19
Identity = 55/75 (73.33%), Postives = 63/75 (84.00%), Query Frame = 0
Query:  423 MLALALERELAINEVTMHLVELRNVFQEFAQLVSEQQEGIDAVCRNAEDAHARTEEGYNAILKAKEGQK-ETTGC 497
            MLALA ERELAI EVT HLVEL++VF +FA+LV  QQEG+DAVCRN E AHA+TE+GY AILKA EGQ+ ET GC
Sbjct:    1 MLALAQERELAIREVTSHLVELKDVFSDFAELVQGQQEGVDAVCRNVEVAHAKTEQGYEAILKANEGQRAETGGC 75          
The following BLAST results are available for this feature:
BLAST of NO14G02090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24582.16.200e-1973.33syntaxin-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02090NO14G02090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02090.1NO14G02090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02090.1.cds1NO14G02090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02090.1 ID=NO14G02090.1|Name=NO14G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2263bp
ACGAACGACAAATGTGAGGCTGACTGCGGCAGCGTGCATACAATTAAGAT
GTCCGCAGCAATGCGACATTGAATTGGCAGTACACATATCCACCCGGATC
GTCATCATCTGGACTACATAGTGTCACATACAAGGCAAAAGTTTTGGTAT
TGAGGCCCGCCCTGCATTCATCTTATTCGCTTGCCTTCCCCCGACCCGCA
CCGACGACCGGGTCGCTCATCAAGTATCATCACATCGTCGTATTCGAAGG
CATAATATAACGGCCCCAATTACACATTCTGCGTGATTCGAAACAGTCCA
CTGACCGCACGACCACAACGCATAACACTGCAATAACATAACGAAGCGAA
TCTTGAGCCACTGCGAGCTTCCCCCCTGCGGGGTCTTCCCCTCCCCCTCC
ACAGCCATCGTCAACTTGCTTGCCTTGTGGGCCTGCCTCTCCCTCTCCAC
CTCCTCCTCCTCCGCAATCTAATCTGAAATGGAATGCCACGACACGCCGC
CGCCAACCCGAAGCAGCAAACTCAAAGGTTCTAATGCTGGCCGCCACGAC
AACTCAAGCGGCGGGTGGGGTACTCCTCGCCGCGCCTCTGGTGCTTCCTC
GTCCTCCTCCTCCTCCTCGCCGTCCTCCTCCCTTTCCGCCGCCGCTCCCC
CCTCCACCGGAGCCGTTTTGGTCGGGCCCCGCAGCAACCGTCAAGAGGTT
ATTGTCGAAATATACGAGCACGAGCGCTGGTCCCGTAGAGCCGATGGATG
GATCCCTTCCGGAGCCCCCCGGCGCGCGCATTGGTGTACGGCACAAGGCA
CCCCCTCCCCCGCTCCCGAAGAGATGGCCCCTCCAGCCAACTTTGGTTGG
GTCAGCAACTGGCGCGTCGACACTTCTTCATCATCTTCGGCTGCGCCACC
TAAGTCATCGTCGTCGGATTCCCCATACCCTCCTCCTTCCTCCTTCAGGG
CCCCCTCCTCCACCCCACCGCCTACCCTCCAAGATCGCCAAGGCTGGGAA
TATGCCACATCGCCGGATAAATTCCATGTTTCTGAGCGCCAACCTCGTGG
GGAAGAGCGATGGAGCGATCGCGCGCGTCGTCGTCGTTGGATCCGTCTTG
CGAAGTATAAGACATTGCTACCCGCCATGACCACCTCTGACGAGCTGGGC
AAACAAGCACAGGAAGGCCTAAAGGGGCTAGTTAGAGGGAGAAGGACAGT
GCAGGAACTCTGTAAATTAATAGGAACAAGAAGGGATTCAAAGGAGATGC
GGGAGAAGGTATTTAATTTGGTGGGCATTATTCGGCAGCACGGCAGGGAG
ATCGAGCAGGTTTTGAAAAATCTGAGGGAGAGGGAAGGAGGGAGGGAAGG
TGGCGTGGGTGGAGGTGTAAAGAAGTGGGGGAATGATTTGGGGAAAGAAC
AGAGGGTCTTTGAGGATGTTTCGAGGGAGGTGGAAAGGAAGTGTAGGAGT
GTGCCTTTGGCGGCCTTGCCTGCCGCTGTTGCTGGTGCGCCACGAGGGAC
TACAGAAGCAACAGGAGCAGCAGGAGGCGCAGGCGCAGGAGGAGCGTCAC
AGAGCAGTAGCAAATGTGGTGGGGGTGGGGGAGGGGCAGTGGCCGCTACA
GAGGGAATGGTGGTCTCGGCGGGCAGAGACTCCTTCCGTCCGTTTGTTAA
TTTGGAAGGCAAGGTCCAGGATCAGGCCCACCACCATACAGAGGAGGAGC
AAACCATACTAAAACAGCTCAAGTTTCAAGATGAAGAGGAAGTGATGCTT
GCCCTCGCGCTTGAAAGGGAGCTGGCAATCAATGAGGTGACCATGCACCT
GGTGGAATTGCGGAATGTCTTTCAGGAGTTTGCGCAGTTGGTGTCGGAGC
AACAAGAGGGCATTGATGCCGTGTGTCGGAATGCGGAGGACGCGCATGCT
CGGACGGAGGAGGGATATAATGCCATTCTGAAGGCAAAAGAAGGACAGAA
AGAAACGACAGGGTGTACGCCCTTCTAGTGAGGAGGAGGGACGAGGGAGA
AAGGATGAATTGAGTTGGCATGGTGGCGGTAATTGTGCGAGTGTAGTCTA
CGTCTCTTATGAAGATACTTTAGGAGGGCCTCAGACTGGCGGATTTGATT
CATCCGTCGTCCCTGGAAGTGGGCCGGCTGGAGGGAGGACGAGAACGAGA
GCCAAAACCAGCGAGTAGAAACACCAGCATTAAGGAGTGTAAAAGCAGCC
GTGTATGAACACATAAGAGTGTACAAAGTAAAGGCATTGAAAGAGAATGT
ACATTTTAGACCA
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protein sequence of NO14G02090.1

>NO14G02090.1-protein ID=NO14G02090.1-protein|Name=NO14G02090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MECHDTPPPTRSSKLKGSNAGRHDNSSGGWGTPRRASGASSSSSSSSPSS
SLSAAAPPSTGAVLVGPRSNRQEVIVEIYEHERWSRRADGWIPSGAPRRA
HWCTAQGTPSPAPEEMAPPANFGWVSNWRVDTSSSSSAAPPKSSSSDSPY
PPPSSFRAPSSTPPPTLQDRQGWEYATSPDKFHVSERQPRGEERWSDRAR
RRRWIRLAKYKTLLPAMTTSDELGKQAQEGLKGLVRGRRTVQELCKLIGT
RRDSKEMREKVFNLVGIIRQHGREIEQVLKNLREREGGREGGVGGGVKKW
GNDLGKEQRVFEDVSREVERKCRSVPLAALPAAVAGAPRGTTEATGAAGG
AGAGGASQSSSKCGGGGGGAVAATEGMVVSAGRDSFRPFVNLEGKVQDQA
HHHTEEEQTILKQLKFQDEEEVMLALALERELAINEVTMHLVELRNVFQE
FAQLVSEQQEGIDAVCRNAEDAHARTEEGYNAILKAKEGQKETTGCTPF*
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mRNA from alignment at chr14:631219..633481+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02090.1 ID=NO14G02090.1|Name=NO14G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2263bp|location=Sequence derived from alignment at chr14:631219..633481+ (Nannochloropsis oceanica)
ACGAACGACAAATGTGAGGCTGACTGCGGCAGCGTGCATACAATTAAGAT GTCCGCAGCAATGCGACATTGAATTGGCAGTACACATATCCACCCGGATC GTCATCATCTGGACTACATAGTGTCACATACAAGGCAAAAGTTTTGGTAT TGAGGCCCGCCCTGCATTCATCTTATTCGCTTGCCTTCCCCCGACCCGCA CCGACGACCGGGTCGCTCATCAAGTATCATCACATCGTCGTATTCGAAGG CATAATATAACGGCCCCAATTACACATTCTGCGTGATTCGAAACAGTCCA CTGACCGCACGACCACAACGCATAACACTGCAATAACATAACGAAGCGAA TCTTGAGCCACTGCGAGCTTCCCCCCTGCGGGGTCTTCCCCTCCCCCTCC ACAGCCATCGTCAACTTGCTTGCCTTGTGGGCCTGCCTCTCCCTCTCCAC CTCCTCCTCCTCCGCAATCTAATCTGAAATGGAATGCCACGACACGCCGC CGCCAACCCGAAGCAGCAAACTCAAAGGTTCTAATGCTGGCCGCCACGAC AACTCAAGCGGCGGGTGGGGTACTCCTCGCCGCGCCTCTGGTGCTTCCTC GTCCTCCTCCTCCTCCTCGCCGTCCTCCTCCCTTTCCGCCGCCGCTCCCC CCTCCACCGGAGCCGTTTTGGTCGGGCCCCGCAGCAACCGTCAAGAGGTT ATTGTCGAAATATACGAGCACGAGCGCTGGTCCCGTAGAGCCGATGGATG GATCCCTTCCGGAGCCCCCCGGCGCGCGCATTGGTGTACGGCACAAGGCA CCCCCTCCCCCGCTCCCGAAGAGATGGCCCCTCCAGCCAACTTTGGTTGG GTCAGCAACTGGCGCGTCGACACTTCTTCATCATCTTCGGCTGCGCCACC TAAGTCATCGTCGTCGGATTCCCCATACCCTCCTCCTTCCTCCTTCAGGG CCCCCTCCTCCACCCCACCGCCTACCCTCCAAGATCGCCAAGGCTGGGAA TATGCCACATCGCCGGATAAATTCCATGTTTCTGAGCGCCAACCTCGTGG GGAAGAGCGATGGAGCGATCGCGCGCGTCGTCGTCGTTGGATCCGTCTTG CGAAGTATAAGACATTGCTACCCGCCATGACCACCTCTGACGAGCTGGGC AAACAAGCACAGGAAGGCCTAAAGGGGCTAGTTAGAGGGAGAAGGACAGT GCAGGAACTCTGTAAATTAATAGGAACAAGAAGGGATTCAAAGGAGATGC GGGAGAAGGTATTTAATTTGGTGGGCATTATTCGGCAGCACGGCAGGGAG ATCGAGCAGGTTTTGAAAAATCTGAGGGAGAGGGAAGGAGGGAGGGAAGG TGGCGTGGGTGGAGGTGTAAAGAAGTGGGGGAATGATTTGGGGAAAGAAC AGAGGGTCTTTGAGGATGTTTCGAGGGAGGTGGAAAGGAAGTGTAGGAGT GTGCCTTTGGCGGCCTTGCCTGCCGCTGTTGCTGGTGCGCCACGAGGGAC TACAGAAGCAACAGGAGCAGCAGGAGGCGCAGGCGCAGGAGGAGCGTCAC AGAGCAGTAGCAAATGTGGTGGGGGTGGGGGAGGGGCAGTGGCCGCTACA GAGGGAATGGTGGTCTCGGCGGGCAGAGACTCCTTCCGTCCGTTTGTTAA TTTGGAAGGCAAGGTCCAGGATCAGGCCCACCACCATACAGAGGAGGAGC AAACCATACTAAAACAGCTCAAGTTTCAAGATGAAGAGGAAGTGATGCTT GCCCTCGCGCTTGAAAGGGAGCTGGCAATCAATGAGGTGACCATGCACCT GGTGGAATTGCGGAATGTCTTTCAGGAGTTTGCGCAGTTGGTGTCGGAGC AACAAGAGGGCATTGATGCCGTGTGTCGGAATGCGGAGGACGCGCATGCT CGGACGGAGGAGGGATATAATGCCATTCTGAAGGCAAAAGAAGGACAGAA AGAAACGACAGGGTGTACGCCCTTCTAGTGAGGAGGAGGGACGAGGGAGA AAGGATGAATTGAGTTGGCATGGTGGCGGTAATTGTGCGAGTGTAGTCTA CGTCTCTTATGAAGATACTTTAGGAGGGCCTCAGACTGGCGGATTTGATT CATCCGTCGTCCCTGGAAGTGGGCCGGCTGGAGGGAGGACGAGAACGAGA GCCAAAACCAGCGAGTAGAAACACCAGCATTAAGGAGTGTAAAAGCAGCC GTGTATGAACACATAAGAGTGTACAAAGTAAAGGCATTGAAAGAGAATGT ACATTTTAGACCA
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Coding sequence (CDS) from alignment at chr14:631219..633481+

>NO14G02090.1 ID=NO14G02090.1|Name=NO14G02090.1|organism=Nannochloropsis oceanica|type=CDS|length=1500bp|location=Sequence derived from alignment at chr14:631219..633481+ (Nannochloropsis oceanica)
ATGGAATGCCACGACACGCCGCCGCCAACCCGAAGCAGCAAACTCAAAGG
TTCTAATGCTGGCCGCCACGACAACTCAAGCGGCGGGTGGGGTACTCCTC
GCCGCGCCTCTGGTGCTTCCTCGTCCTCCTCCTCCTCCTCGCCGTCCTCC
TCCCTTTCCGCCGCCGCTCCCCCCTCCACCGGAGCCGTTTTGGTCGGGCC
CCGCAGCAACCGTCAAGAGGTTATTGTCGAAATATACGAGCACGAGCGCT
GGTCCCGTAGAGCCGATGGATGGATCCCTTCCGGAGCCCCCCGGCGCGCG
CATTGGTGTACGGCACAAGGCACCCCCTCCCCCGCTCCCGAAGAGATGGC
CCCTCCAGCCAACTTTGGTTGGGTCAGCAACTGGCGCGTCGACACTTCTT
CATCATCTTCGGCTGCGCCACCTAAGTCATCGTCGTCGGATTCCCCATAC
CCTCCTCCTTCCTCCTTCAGGGCCCCCTCCTCCACCCCACCGCCTACCCT
CCAAGATCGCCAAGGCTGGGAATATGCCACATCGCCGGATAAATTCCATG
TTTCTGAGCGCCAACCTCGTGGGGAAGAGCGATGGAGCGATCGCGCGCGT
CGTCGTCGTTGGATCCGTCTTGCGAAGTATAAGACATTGCTACCCGCCAT
GACCACCTCTGACGAGCTGGGCAAACAAGCACAGGAAGGCCTAAAGGGGC
TAGTTAGAGGGAGAAGGACAGTGCAGGAACTCTGTAAATTAATAGGAACA
AGAAGGGATTCAAAGGAGATGCGGGAGAAGGTATTTAATTTGGTGGGCAT
TATTCGGCAGCACGGCAGGGAGATCGAGCAGGTTTTGAAAAATCTGAGGG
AGAGGGAAGGAGGGAGGGAAGGTGGCGTGGGTGGAGGTGTAAAGAAGTGG
GGGAATGATTTGGGGAAAGAACAGAGGGTCTTTGAGGATGTTTCGAGGGA
GGTGGAAAGGAAGTGTAGGAGTGTGCCTTTGGCGGCCTTGCCTGCCGCTG
TTGCTGGTGCGCCACGAGGGACTACAGAAGCAACAGGAGCAGCAGGAGGC
GCAGGCGCAGGAGGAGCGTCACAGAGCAGTAGCAAATGTGGTGGGGGTGG
GGGAGGGGCAGTGGCCGCTACAGAGGGAATGGTGGTCTCGGCGGGCAGAG
ACTCCTTCCGTCCGTTTGTTAATTTGGAAGGCAAGGTCCAGGATCAGGCC
CACCACCATACAGAGGAGGAGCAAACCATACTAAAACAGCTCAAGTTTCA
AGATGAAGAGGAAGTGATGCTTGCCCTCGCGCTTGAAAGGGAGCTGGCAA
TCAATGAGGTGACCATGCACCTGGTGGAATTGCGGAATGTCTTTCAGGAG
TTTGCGCAGTTGGTGTCGGAGCAACAAGAGGGCATTGATGCCGTGTGTCG
GAATGCGGAGGACGCGCATGCTCGGACGGAGGAGGGATATAATGCCATTC
TGAAGGCAAAAGAAGGACAGAAAGAAACGACAGGGTGTACGCCCTTCTAG
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Synonyms
Publications