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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr14 | genome | chr14:631219..633481 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G02090.1 vs.
Match: EWM24582.1 (syntaxin-like protein [Nannochloropsis gaditana]) HSP 1 Score: 105.1 bits (261), Expect = 6.200e-19 Identity = 55/75 (73.33%), Postives = 63/75 (84.00%), Query Frame = 0
Query: 423 MLALALERELAINEVTMHLVELRNVFQEFAQLVSEQQEGIDAVCRNAEDAHARTEEGYNAILKAKEGQK-ETTGC 497
MLALA ERELAI EVT HLVEL++VF +FA+LV QQEG+DAVCRN E AHA+TE+GY AILKA EGQ+ ET GC
Sbjct: 1 MLALAQERELAIREVTSHLVELKDVFSDFAELVQGQQEGVDAVCRNVEVAHAKTEQGYEAILKANEGQRAETGGC 75
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G02090.1 ID=NO14G02090.1|Name=NO14G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2263bp ACGAACGACAAATGTGAGGCTGACTGCGGCAGCGTGCATACAATTAAGAT GTCCGCAGCAATGCGACATTGAATTGGCAGTACACATATCCACCCGGATC GTCATCATCTGGACTACATAGTGTCACATACAAGGCAAAAGTTTTGGTAT TGAGGCCCGCCCTGCATTCATCTTATTCGCTTGCCTTCCCCCGACCCGCA CCGACGACCGGGTCGCTCATCAAGTATCATCACATCGTCGTATTCGAAGG CATAATATAACGGCCCCAATTACACATTCTGCGTGATTCGAAACAGTCCA CTGACCGCACGACCACAACGCATAACACTGCAATAACATAACGAAGCGAA TCTTGAGCCACTGCGAGCTTCCCCCCTGCGGGGTCTTCCCCTCCCCCTCC ACAGCCATCGTCAACTTGCTTGCCTTGTGGGCCTGCCTCTCCCTCTCCAC CTCCTCCTCCTCCGCAATCTAATCTGAAATGGAATGCCACGACACGCCGC CGCCAACCCGAAGCAGCAAACTCAAAGGTTCTAATGCTGGCCGCCACGAC AACTCAAGCGGCGGGTGGGGTACTCCTCGCCGCGCCTCTGGTGCTTCCTC GTCCTCCTCCTCCTCCTCGCCGTCCTCCTCCCTTTCCGCCGCCGCTCCCC CCTCCACCGGAGCCGTTTTGGTCGGGCCCCGCAGCAACCGTCAAGAGGTT ATTGTCGAAATATACGAGCACGAGCGCTGGTCCCGTAGAGCCGATGGATG GATCCCTTCCGGAGCCCCCCGGCGCGCGCATTGGTGTACGGCACAAGGCA CCCCCTCCCCCGCTCCCGAAGAGATGGCCCCTCCAGCCAACTTTGGTTGG GTCAGCAACTGGCGCGTCGACACTTCTTCATCATCTTCGGCTGCGCCACC TAAGTCATCGTCGTCGGATTCCCCATACCCTCCTCCTTCCTCCTTCAGGG CCCCCTCCTCCACCCCACCGCCTACCCTCCAAGATCGCCAAGGCTGGGAA TATGCCACATCGCCGGATAAATTCCATGTTTCTGAGCGCCAACCTCGTGG GGAAGAGCGATGGAGCGATCGCGCGCGTCGTCGTCGTTGGATCCGTCTTG CGAAGTATAAGACATTGCTACCCGCCATGACCACCTCTGACGAGCTGGGC AAACAAGCACAGGAAGGCCTAAAGGGGCTAGTTAGAGGGAGAAGGACAGT GCAGGAACTCTGTAAATTAATAGGAACAAGAAGGGATTCAAAGGAGATGC GGGAGAAGGTATTTAATTTGGTGGGCATTATTCGGCAGCACGGCAGGGAG ATCGAGCAGGTTTTGAAAAATCTGAGGGAGAGGGAAGGAGGGAGGGAAGG TGGCGTGGGTGGAGGTGTAAAGAAGTGGGGGAATGATTTGGGGAAAGAAC AGAGGGTCTTTGAGGATGTTTCGAGGGAGGTGGAAAGGAAGTGTAGGAGT GTGCCTTTGGCGGCCTTGCCTGCCGCTGTTGCTGGTGCGCCACGAGGGAC TACAGAAGCAACAGGAGCAGCAGGAGGCGCAGGCGCAGGAGGAGCGTCAC AGAGCAGTAGCAAATGTGGTGGGGGTGGGGGAGGGGCAGTGGCCGCTACA GAGGGAATGGTGGTCTCGGCGGGCAGAGACTCCTTCCGTCCGTTTGTTAA TTTGGAAGGCAAGGTCCAGGATCAGGCCCACCACCATACAGAGGAGGAGC AAACCATACTAAAACAGCTCAAGTTTCAAGATGAAGAGGAAGTGATGCTT GCCCTCGCGCTTGAAAGGGAGCTGGCAATCAATGAGGTGACCATGCACCT GGTGGAATTGCGGAATGTCTTTCAGGAGTTTGCGCAGTTGGTGTCGGAGC AACAAGAGGGCATTGATGCCGTGTGTCGGAATGCGGAGGACGCGCATGCT CGGACGGAGGAGGGATATAATGCCATTCTGAAGGCAAAAGAAGGACAGAA AGAAACGACAGGGTGTACGCCCTTCTAGTGAGGAGGAGGGACGAGGGAGA AAGGATGAATTGAGTTGGCATGGTGGCGGTAATTGTGCGAGTGTAGTCTA CGTCTCTTATGAAGATACTTTAGGAGGGCCTCAGACTGGCGGATTTGATT CATCCGTCGTCCCTGGAAGTGGGCCGGCTGGAGGGAGGACGAGAACGAGA GCCAAAACCAGCGAGTAGAAACACCAGCATTAAGGAGTGTAAAAGCAGCC GTGTATGAACACATAAGAGTGTACAAAGTAAAGGCATTGAAAGAGAATGT ACATTTTAGACCA back to topprotein sequence of NO14G02090.1 >NO14G02090.1-protein ID=NO14G02090.1-protein|Name=NO14G02090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp MECHDTPPPTRSSKLKGSNAGRHDNSSGGWGTPRRASGASSSSSSSSPSS SLSAAAPPSTGAVLVGPRSNRQEVIVEIYEHERWSRRADGWIPSGAPRRA HWCTAQGTPSPAPEEMAPPANFGWVSNWRVDTSSSSSAAPPKSSSSDSPY PPPSSFRAPSSTPPPTLQDRQGWEYATSPDKFHVSERQPRGEERWSDRAR RRRWIRLAKYKTLLPAMTTSDELGKQAQEGLKGLVRGRRTVQELCKLIGT RRDSKEMREKVFNLVGIIRQHGREIEQVLKNLREREGGREGGVGGGVKKW GNDLGKEQRVFEDVSREVERKCRSVPLAALPAAVAGAPRGTTEATGAAGG AGAGGASQSSSKCGGGGGGAVAATEGMVVSAGRDSFRPFVNLEGKVQDQA HHHTEEEQTILKQLKFQDEEEVMLALALERELAINEVTMHLVELRNVFQE FAQLVSEQQEGIDAVCRNAEDAHARTEEGYNAILKAKEGQKETTGCTPF* back to topmRNA from alignment at chr14:631219..633481+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G02090.1 ID=NO14G02090.1|Name=NO14G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2263bp|location=Sequence derived from alignment at chr14:631219..633481+ (Nannochloropsis oceanica) ACGAACGACAAATGTGAGGCTGACTGCGGCAGCGTGCATACAATTAAGAT
GTCCGCAGCAATGCGACATTGAATTGGCAGTACACATATCCACCCGGATC
GTCATCATCTGGACTACATAGTGTCACATACAAGGCAAAAGTTTTGGTAT
TGAGGCCCGCCCTGCATTCATCTTATTCGCTTGCCTTCCCCCGACCCGCA
CCGACGACCGGGTCGCTCATCAAGTATCATCACATCGTCGTATTCGAAGG
CATAATATAACGGCCCCAATTACACATTCTGCGTGATTCGAAACAGTCCA
CTGACCGCACGACCACAACGCATAACACTGCAATAACATAACGAAGCGAA
TCTTGAGCCACTGCGAGCTTCCCCCCTGCGGGGTCTTCCCCTCCCCCTCC
ACAGCCATCGTCAACTTGCTTGCCTTGTGGGCCTGCCTCTCCCTCTCCAC
CTCCTCCTCCTCCGCAATCTAATCTGAAATGGAATGCCACGACACGCCGC
CGCCAACCCGAAGCAGCAAACTCAAAGGTTCTAATGCTGGCCGCCACGAC
AACTCAAGCGGCGGGTGGGGTACTCCTCGCCGCGCCTCTGGTGCTTCCTC
GTCCTCCTCCTCCTCCTCGCCGTCCTCCTCCCTTTCCGCCGCCGCTCCCC
CCTCCACCGGAGCCGTTTTGGTCGGGCCCCGCAGCAACCGTCAAGAGGTT
ATTGTCGAAATATACGAGCACGAGCGCTGGTCCCGTAGAGCCGATGGATG
GATCCCTTCCGGAGCCCCCCGGCGCGCGCATTGGTGTACGGCACAAGGCA
CCCCCTCCCCCGCTCCCGAAGAGATGGCCCCTCCAGCCAACTTTGGTTGG
GTCAGCAACTGGCGCGTCGACACTTCTTCATCATCTTCGGCTGCGCCACC
TAAGTCATCGTCGTCGGATTCCCCATACCCTCCTCCTTCCTCCTTCAGGG
CCCCCTCCTCCACCCCACCGCCTACCCTCCAAGATCGCCAAGGCTGGGAA
TATGCCACATCGCCGGATAAATTCCATGTTTCTGAGCGCCAACCTCGTGG
GGAAGAGCGATGGAGCGATCGCGCGCGTCGTCGTCGTTGGATCCGTCTTG
CGAAGTATAAGACATTGCTACCCGCCATGACCACCTCTGACGAGCTGGGC
AAACAAGCACAGGAAGGCCTAAAGGGGCTAGTTAGAGGGAGAAGGACAGT
GCAGGAACTCTGTAAATTAATAGGAACAAGAAGGGATTCAAAGGAGATGC
GGGAGAAGGTATTTAATTTGGTGGGCATTATTCGGCAGCACGGCAGGGAG
ATCGAGCAGGTTTTGAAAAATCTGAGGGAGAGGGAAGGAGGGAGGGAAGG
TGGCGTGGGTGGAGGTGTAAAGAAGTGGGGGAATGATTTGGGGAAAGAAC
AGAGGGTCTTTGAGGATGTTTCGAGGGAGGTGGAAAGGAAGTGTAGGAGT
GTGCCTTTGGCGGCCTTGCCTGCCGCTGTTGCTGGTGCGCCACGAGGGAC
TACAGAAGCAACAGGAGCAGCAGGAGGCGCAGGCGCAGGAGGAGCGTCAC
AGAGCAGTAGCAAATGTGGTGGGGGTGGGGGAGGGGCAGTGGCCGCTACA
GAGGGAATGGTGGTCTCGGCGGGCAGAGACTCCTTCCGTCCGTTTGTTAA
TTTGGAAGGCAAGGTCCAGGATCAGGCCCACCACCATACAGAGGAGGAGC
AAACCATACTAAAACAGCTCAAGTTTCAAGATGAAGAGGAAGTGATGCTT
GCCCTCGCGCTTGAAAGGGAGCTGGCAATCAATGAGGTGACCATGCACCT
GGTGGAATTGCGGAATGTCTTTCAGGAGTTTGCGCAGTTGGTGTCGGAGC
AACAAGAGGGCATTGATGCCGTGTGTCGGAATGCGGAGGACGCGCATGCT
CGGACGGAGGAGGGATATAATGCCATTCTGAAGGCAAAAGAAGGACAGAA
AGAAACGACAGGGTGTACGCCCTTCTAGTGAGGAGGAGGGACGAGGGAGA
AAGGATGAATTGAGTTGGCATGGTGGCGGTAATTGTGCGAGTGTAGTCTA
CGTCTCTTATGAAGATACTTTAGGAGGGCCTCAGACTGGCGGATTTGATT
CATCCGTCGTCCCTGGAAGTGGGCCGGCTGGAGGGAGGACGAGAACGAGA
GCCAAAACCAGCGAGTAGAAACACCAGCATTAAGGAGTGTAAAAGCAGCC
GTGTATGAACACATAAGAGTGTACAAAGTAAAGGCATTGAAAGAGAATGT
ACATTTTAGACCA back to topCoding sequence (CDS) from alignment at chr14:631219..633481+ >NO14G02090.1 ID=NO14G02090.1|Name=NO14G02090.1|organism=Nannochloropsis oceanica|type=CDS|length=1500bp|location=Sequence derived from alignment at chr14:631219..633481+ (Nannochloropsis oceanica) ATGGAATGCCACGACACGCCGCCGCCAACCCGAAGCAGCAAACTCAAAGG TTCTAATGCTGGCCGCCACGACAACTCAAGCGGCGGGTGGGGTACTCCTC GCCGCGCCTCTGGTGCTTCCTCGTCCTCCTCCTCCTCCTCGCCGTCCTCC TCCCTTTCCGCCGCCGCTCCCCCCTCCACCGGAGCCGTTTTGGTCGGGCC CCGCAGCAACCGTCAAGAGGTTATTGTCGAAATATACGAGCACGAGCGCT GGTCCCGTAGAGCCGATGGATGGATCCCTTCCGGAGCCCCCCGGCGCGCG CATTGGTGTACGGCACAAGGCACCCCCTCCCCCGCTCCCGAAGAGATGGC CCCTCCAGCCAACTTTGGTTGGGTCAGCAACTGGCGCGTCGACACTTCTT CATCATCTTCGGCTGCGCCACCTAAGTCATCGTCGTCGGATTCCCCATAC CCTCCTCCTTCCTCCTTCAGGGCCCCCTCCTCCACCCCACCGCCTACCCT CCAAGATCGCCAAGGCTGGGAATATGCCACATCGCCGGATAAATTCCATG TTTCTGAGCGCCAACCTCGTGGGGAAGAGCGATGGAGCGATCGCGCGCGT CGTCGTCGTTGGATCCGTCTTGCGAAGTATAAGACATTGCTACCCGCCAT GACCACCTCTGACGAGCTGGGCAAACAAGCACAGGAAGGCCTAAAGGGGC TAGTTAGAGGGAGAAGGACAGTGCAGGAACTCTGTAAATTAATAGGAACA AGAAGGGATTCAAAGGAGATGCGGGAGAAGGTATTTAATTTGGTGGGCAT TATTCGGCAGCACGGCAGGGAGATCGAGCAGGTTTTGAAAAATCTGAGGG AGAGGGAAGGAGGGAGGGAAGGTGGCGTGGGTGGAGGTGTAAAGAAGTGG GGGAATGATTTGGGGAAAGAACAGAGGGTCTTTGAGGATGTTTCGAGGGA GGTGGAAAGGAAGTGTAGGAGTGTGCCTTTGGCGGCCTTGCCTGCCGCTG TTGCTGGTGCGCCACGAGGGACTACAGAAGCAACAGGAGCAGCAGGAGGC GCAGGCGCAGGAGGAGCGTCACAGAGCAGTAGCAAATGTGGTGGGGGTGG GGGAGGGGCAGTGGCCGCTACAGAGGGAATGGTGGTCTCGGCGGGCAGAG ACTCCTTCCGTCCGTTTGTTAATTTGGAAGGCAAGGTCCAGGATCAGGCC CACCACCATACAGAGGAGGAGCAAACCATACTAAAACAGCTCAAGTTTCA AGATGAAGAGGAAGTGATGCTTGCCCTCGCGCTTGAAAGGGAGCTGGCAA TCAATGAGGTGACCATGCACCTGGTGGAATTGCGGAATGTCTTTCAGGAG TTTGCGCAGTTGGTGTCGGAGCAACAAGAGGGCATTGATGCCGTGTGTCG GAATGCGGAGGACGCGCATGCTCGGACGGAGGAGGGATATAATGCCATTC TGAAGGCAAAAGAAGGACAGAAAGAAACGACAGGGTGTACGCCCTTCTAG back to top
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