NO14G02060, NO14G02060 (gene) Nannochloropsis oceanica

Overview
NameNO14G02060
Unique NameNO14G02060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1324
Alignment locationchr14:626003..627326 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:626003..627326 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR028156RIP
IPR028159RPA_interact_C_dom
IPR028158RPA_interact_N_dom
Homology
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BLAST of NO14G02060 vs. NCBI_GenBank
Match: EWM24599.1 (hypothetical protein Naga_100062g5 [Nannochloropsis gaditana])

HSP 1 Score: 167.9 bits (424), Expect = 5.800e-38
Identity = 137/329 (41.64%), Postives = 174/329 (52.89%), Query Frame = 0 
Query:    7 RTRPGPKARAEAFFSPSSITAPTARGTSGSLSRXXXXXXXXSGWKDRLKQRCLKRVRDERGRLIQELRGIKSPQPSGSS----LRPSTLNALSPTRLNQPRPGGSYDGPRCPTPSFISSAVMSILQDEMRAGSRTQVEGEAGGNELEKDEQLVSPITLMSTADLSEDQXXXXXXXXXXXXXXXXXQGPPAG---RRGSTRAHLSMDELIKNNKEWKEDDKDVEDGVDALSPEEQLELMQCIEEALQAEVRAAEERELEEYSRLENHEIEASVEALYDDDILLCADDVAVLCPCCKANFLLCQNGEAFCACGLRVEATKGAGSLAWLQEL 329
            + RPG K  AEAFF     T             XXXX    SGWKDRLK+RCL  V  ERGRLIQELRG+KSP P   S      P   + LSP+ L   RP  S     C  PS + S VMSILQ EMR    +  EG+A G + + ++  ++        D S +                    PP+G   + G +    S+ E     +E +   +    G++ LS  EQLELM+CIEEAL+AEV AA+   LEEYS+LE+ +IEASV+ALYD    L  DD+AVLCPCCK+NFLL  N +  CACGLR    +    +AW  E+
Sbjct:    8 KPRPGLKTSAEAFF-----TTTXXXXXXXXXXXXXXXTSKSSGWKDRLKERCLNHVHRERGRLIQELRGLKSPPPRALSSHVPSEPLPSSTLSPS-LALLRPSESSSPSLCFNPSLMGSTVMSILQSEMRVVRMSCEEGQAHGADGKLNDDGINGFRHGENEDQSFEPRYPPRPIFASNQGHAT---PPSGSWLKEGGSPISRSVAE-----EEDRATTEYEAGGLEDLSEMEQLELMRCIEEALEAEVMAADAEALEEYSQLESSDIEASVQALYDCH-TLSHDDIAVLCPCCKSNFLLNHNEDIACACGLR---GREQWPVAWAHEV 318
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BLAST of NO14G02060 vs. NCBI_GenBank
Match: CBN78641.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 77.0 bits (188), Expect = 1.300e-10
Identity = 66/174 (37.93%), Postives = 86/174 (49.43%), Query Frame = 0 
Query:  205 DELIKNNKEWKEDDKDVEDGVDALSPEEQLELMQCIEEALQAEVRAAEERELEEYS---RLENHEIEASVEALYDDDILLCADDVAVLCPCCKANFLL---CQNGEAFCACGLRVEATKGAGSLAWLQELLAEVYAHHKGMCVVKEPVFFQR---GMGDLWVECVTCSWSAQIL 370
            DEL   +    EDD D E     LSP+E LE+MQ IEEA + E   AE   LE+Y    RLE  E+E +V +L  DDI     D AVLCP CK ++LL     +    CACG R++       L   ++ LA+ Y+ H   C   EP F      G   LW  C  C ++  +L
Sbjct:    5 DELGWGDGGGAEDDCDEE---HLLSPDEYLEMMQYIEEACKEEDFRAEAAVLEDYELTRRLEEEEVEYAVASL--DDINGNGQDDAVLCPVCKRDYLLHPGPPSASIVCACGFRLDTGGDRLGLEHFKQQLADTYSEHSTACSA-EPSFVVEGAPGFDVLWSSCDGCGFARVVL 172
The following BLAST results are available for this feature:
BLAST of NO14G02060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM24599.15.800e-3841.64hypothetical protein Naga_100062g5 [Nannochloropsi... [more]
CBN78641.11.300e-1037.93conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002422NSK002422Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02060.1NO14G02060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590291gene_5779Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100062g5gene5883Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02060.1NO14G02060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02060 ID=NO14G02060|Name=NO14G02060|organism=Nannochloropsis oceanica|type=gene|length=1324bp
ACAGATCGTAGCTGTGGATACGGTTCTCGGCATCGCTGCTGCACACCTTA
AAATGGACGACAAGGGAGGTCGTACACGACCAGGCCCAAAGGCGAGAGCA
GAAGCATTCTTTTCGCCGTCGAGCATCACAGCACCCACGGCAAGGGGGAC
TTCGGGTAGCTTGTCCAGGTCTTCCGCATCTTCCTCGTCAGGATCAGGAT
GGAAAGATCGGCTAAAACAACGATGCCTCAAACGGGTGCGTGACGAGCGC
GGTCGCCTCATCCAGGAGCTGCGGGGAATCAAGTCTCCTCAGCCCTCGGG
ATCCTCTTTGCGTCCTTCCACCCTGAACGCCTTGTCACCGACCCGCTTGA
ACCAACCACGACCTGGAGGAAGTTATGACGGGCCGCGATGTCCCACCCCG
TCGTTTATAAGCAGTGCCGTCATGTCCATTTTGCAAGACGAGATGCGAGC
GGGCAGTCGAACTCAAGTAGAAGGGGAGGCAGGCGGGAACGAGCTGGAAA
AGGATGAGCAGCTGGTTTCCCCGATAACATTGATGTCAACGGCGGATCTG
TCAGAAGATCAGCGACACCAGCGACGACAACAACAGCAAACAAACAACTT
CACGACTCCATCGCAAGGGCCTCCCGCCGGCCGGCGAGGGAGCACCAGAG
CACACCTGTCCATGGACGAGCTTATCAAGAACAACAAGGAATGGAAGGAA
GATGACAAAGACGTTGAAGATGGAGTCGATGCCTTATCTCCCGAGGAGCA
ACTAGAGCTGATGCAATGTATTGAGGAGGCTTTGCAAGCCGAAGTGCGTG
CCGCAGAGGAACGCGAATTGGAAGAATACTCACGACTGGAAAATCATGAG
ATCGAAGCGTCTGTTGAAGCGTTGTATGATGACGATATCCTCCTATGTGC
GGATGATGTGGCCGTGCTATGCCCCTGTTGTAAGGCAAATTTTTTGTTGT
GTCAGAACGGGGAGGCGTTCTGTGCGTGTGGCTTGCGAGTGGAGGCCACG
AAGGGGGCAGGGAGTTTGGCATGGCTGCAAGAGCTGTTGGCAGAGGTGTA
TGCGCATCACAAAGGGATGTGTGTGGTCAAGGAGCCGGTATTTTTCCAGA
GAGGCATGGGTGATCTGTGGGTGGAATGTGTGACGTGTAGTTGGTCGGCA
CAAATATTGTGATGGAGAGGAGAGAAGGGACGGAGGGTTTGTACACACAT
GAAATGTAAATGGATGGCAACTGAATTTTAATTTCATGCACATCATTTGT
CGACGGGACAGGAAAAAGAATGTATGGGCTACTTTCAATTCTCGGGAGAA
TTTTTGGCAAAGCAGCAACGGTAA
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protein sequence of NO14G02060.1

>NO14G02060.1-protein ID=NO14G02060.1-protein|Name=NO14G02060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MDDKGGRTRPGPKARAEAFFSPSSITAPTARGTSGSLSRSSASSSSGSGW
KDRLKQRCLKRVRDERGRLIQELRGIKSPQPSGSSLRPSTLNALSPTRLN
QPRPGGSYDGPRCPTPSFISSAVMSILQDEMRAGSRTQVEGEAGGNELEK
DEQLVSPITLMSTADLSEDQRHQRRQQQQTNNFTTPSQGPPAGRRGSTRA
HLSMDELIKNNKEWKEDDKDVEDGVDALSPEEQLELMQCIEEALQAEVRA
AEERELEEYSRLENHEIEASVEALYDDDILLCADDVAVLCPCCKANFLLC
QNGEAFCACGLRVEATKGAGSLAWLQELLAEVYAHHKGMCVVKEPVFFQR
GMGDLWVECVTCSWSAQIL*
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Synonyms
Publications