NO14G02060.1, NO14G02060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02060.1
Unique NameNO14G02060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1324
Alignment locationchr14:626003..627326 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:626003..627326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02060.1 vs.
Match: EWM24599.1 (hypothetical protein Naga_100062g5 [Nannochloropsis gaditana])

HSP 1 Score: 184.1 bits (466), Expect = 7.800e-43
Identity = 140/327 (42.81%), Postives = 184/327 (56.27%), Query Frame = 0 
Query:    7 RTRPGPKARAEAFFSPSSITAPTARGTSGSLSRSSASSSSGSGWKDRLKQRCLKRVRDERGRLIQELRGIKSPQPSGSSLR----PSTLNALSPTRLNQPRPGGSYDGPRCPTPSFISSAVMSILQDEMRAGSRTQVEGEAGGNELEKDEQLVSPITLMSTADLSEDQRHQRRQQQQTNN-FTTPSQGPPAGRRGSTRAHLSMDELIKNNKEWKEDDKDVEDGVDALSPEEQLELMQCIEEALQAEVRAAEERELEEYSRLENHEIEASVEALYDDDILLCADDVAVLCPCCKANFLLCQNGEAFCACGLRVEATKGAGSLAWLQEL 329
            + RPG K  AEAFF+ ++ TA     T      +++S+S  SGWKDRLK+RCL  V  ERGRLIQELRG+KSP P   S      P   + LSP+ L   RP  S     C  PS + S VMSILQ EMR    +  EG+A G + + ++  ++        D S + R+  R    +N    TP  G      GS  +    +E  +   E++        G++ LS  EQLELM+CIEEAL+AEV AA+   LEEYS+LE+ +IEASV+ALYD    L  DD+AVLCPCCK+NFLL  N +  CACGLR    +    +AW  E+
Sbjct:    8 KPRPGLKTSAEAFFTTTASTA-----TQRENPAAASSTSKSSGWKDRLKERCLNHVHRERGRLIQELRGLKSPPPRALSSHVPSEPLPSSTLSPS-LALLRPSESSSPSLCFNPSLMGSTVMSILQSEMRVVRMSCEEGQAHGADGKLNDDGINGFRHGENEDQSFEPRYPPRPIFASNQGHATPPSGSWLKEGGSPISRSVAEEEDRATTEYEAG------GLEDLSEMEQLELMRCIEEALEAEVMAADAEALEEYSQLESSDIEASVQALYDCH-TLSHDDIAVLCPCCKSNFLLNHNEDIACACGLR---GREQWPVAWAHEV 318
The following BLAST results are available for this feature:
BLAST of NO14G02060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24599.17.800e-4342.81hypothetical protein Naga_100062g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02060NO14G02060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02060.1NO14G02060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02060.1.cds1NO14G02060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02060.1 ID=NO14G02060.1|Name=NO14G02060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1324bp
ACAGATCGTAGCTGTGGATACGGTTCTCGGCATCGCTGCTGCACACCTTA
AAATGGACGACAAGGGAGGTCGTACACGACCAGGCCCAAAGGCGAGAGCA
GAAGCATTCTTTTCGCCGTCGAGCATCACAGCACCCACGGCAAGGGGGAC
TTCGGGTAGCTTGTCCAGGTCTTCCGCATCTTCCTCGTCAGGATCAGGAT
GGAAAGATCGGCTAAAACAACGATGCCTCAAACGGGTGCGTGACGAGCGC
GGTCGCCTCATCCAGGAGCTGCGGGGAATCAAGTCTCCTCAGCCCTCGGG
ATCCTCTTTGCGTCCTTCCACCCTGAACGCCTTGTCACCGACCCGCTTGA
ACCAACCACGACCTGGAGGAAGTTATGACGGGCCGCGATGTCCCACCCCG
TCGTTTATAAGCAGTGCCGTCATGTCCATTTTGCAAGACGAGATGCGAGC
GGGCAGTCGAACTCAAGTAGAAGGGGAGGCAGGCGGGAACGAGCTGGAAA
AGGATGAGCAGCTGGTTTCCCCGATAACATTGATGTCAACGGCGGATCTG
TCAGAAGATCAGCGACACCAGCGACGACAACAACAGCAAACAAACAACTT
CACGACTCCATCGCAAGGGCCTCCCGCCGGCCGGCGAGGGAGCACCAGAG
CACACCTGTCCATGGACGAGCTTATCAAGAACAACAAGGAATGGAAGGAA
GATGACAAAGACGTTGAAGATGGAGTCGATGCCTTATCTCCCGAGGAGCA
ACTAGAGCTGATGCAATGTATTGAGGAGGCTTTGCAAGCCGAAGTGCGTG
CCGCAGAGGAACGCGAATTGGAAGAATACTCACGACTGGAAAATCATGAG
ATCGAAGCGTCTGTTGAAGCGTTGTATGATGACGATATCCTCCTATGTGC
GGATGATGTGGCCGTGCTATGCCCCTGTTGTAAGGCAAATTTTTTGTTGT
GTCAGAACGGGGAGGCGTTCTGTGCGTGTGGCTTGCGAGTGGAGGCCACG
AAGGGGGCAGGGAGTTTGGCATGGCTGCAAGAGCTGTTGGCAGAGGTGTA
TGCGCATCACAAAGGGATGTGTGTGGTCAAGGAGCCGGTATTTTTCCAGA
GAGGCATGGGTGATCTGTGGGTGGAATGTGTGACGTGTAGTTGGTCGGCA
CAAATATTGTGATGGAGAGGAGAGAAGGGACGGAGGGTTTGTACACACAT
GAAATGTAAATGGATGGCAACTGAATTTTAATTTCATGCACATCATTTGT
CGACGGGACAGGAAAAAGAATGTATGGGCTACTTTCAATTCTCGGGAGAA
TTTTTGGCAAAGCAGCAACGGTAA
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protein sequence of NO14G02060.1

>NO14G02060.1-protein ID=NO14G02060.1-protein|Name=NO14G02060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MDDKGGRTRPGPKARAEAFFSPSSITAPTARGTSGSLSRSSASSSSGSGW
KDRLKQRCLKRVRDERGRLIQELRGIKSPQPSGSSLRPSTLNALSPTRLN
QPRPGGSYDGPRCPTPSFISSAVMSILQDEMRAGSRTQVEGEAGGNELEK
DEQLVSPITLMSTADLSEDQRHQRRQQQQTNNFTTPSQGPPAGRRGSTRA
HLSMDELIKNNKEWKEDDKDVEDGVDALSPEEQLELMQCIEEALQAEVRA
AEERELEEYSRLENHEIEASVEALYDDDILLCADDVAVLCPCCKANFLLC
QNGEAFCACGLRVEATKGAGSLAWLQELLAEVYAHHKGMCVVKEPVFFQR
GMGDLWVECVTCSWSAQIL*
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mRNA from alignment at chr14:626003..627326+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02060.1 ID=NO14G02060.1|Name=NO14G02060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1324bp|location=Sequence derived from alignment at chr14:626003..627326+ (Nannochloropsis oceanica)
ACAGATCGTAGCTGTGGATACGGTTCTCGGCATCGCTGCTGCACACCTTA
AAATGGACGACAAGGGAGGTCGTACACGACCAGGCCCAAAGGCGAGAGCA
GAAGCATTCTTTTCGCCGTCGAGCATCACAGCACCCACGGCAAGGGGGAC
TTCGGGTAGCTTGTCCAGGTCTTCCGCATCTTCCTCGTCAGGATCAGGAT
GGAAAGATCGGCTAAAACAACGATGCCTCAAACGGGTGCGTGACGAGCGC
GGTCGCCTCATCCAGGAGCTGCGGGGAATCAAGTCTCCTCAGCCCTCGGG
ATCCTCTTTGCGTCCTTCCACCCTGAACGCCTTGTCACCGACCCGCTTGA
ACCAACCACGACCTGGAGGAAGTTATGACGGGCCGCGATGTCCCACCCCG
TCGTTTATAAGCAGTGCCGTCATGTCCATTTTGCAAGACGAGATGCGAGC
GGGCAGTCGAACTCAAGTAGAAGGGGAGGCAGGCGGGAACGAGCTGGAAA
AGGATGAGCAGCTGGTTTCCCCGATAACATTGATGTCAACGGCGGATCTG
TCAGAAGATCAGCGACACCAGCGACGACAACAACAGCAAACAAACAACTT
CACGACTCCATCGCAAGGGCCTCCCGCCGGCCGGCGAGGGAGCACCAGAG
CACACCTGTCCATGGACGAGCTTATCAAGAACAACAAGGAATGGAAGGAA
GATGACAAAGACGTTGAAGATGGAGTCGATGCCTTATCTCCCGAGGAGCA
ACTAGAGCTGATGCAATGTATTGAGGAGGCTTTGCAAGCCGAAGTGCGTG
CCGCAGAGGAACGCGAATTGGAAGAATACTCACGACTGGAAAATCATGAG
ATCGAAGCGTCTGTTGAAGCGTTGTATGATGACGATATCCTCCTATGTGC
GGATGATGTGGCCGTGCTATGCCCCTGTTGTAAGGCAAATTTTTTGTTGT
GTCAGAACGGGGAGGCGTTCTGTGCGTGTGGCTTGCGAGTGGAGGCCACG
AAGGGGGCAGGGAGTTTGGCATGGCTGCAAGAGCTGTTGGCAGAGGTGTA
TGCGCATCACAAAGGGATGTGTGTGGTCAAGGAGCCGGTATTTTTCCAGA
GAGGCATGGGTGATCTGTGGGTGGAATGTGTGACGTGTAGTTGGTCGGCA
CAAATATTGTGATGGAGAGGAGAGAAGGGACGGAGGGTTTGTACACACAT
GAAATGTAAATGGATGGCAACTGAATTTTAATTTCATGCACATCATTTGT
CGACGGGACAGGAAAAAGAATGTATGGGCTACTTTCAATTCTCGGGAGAA
TTTTTGGCAAAGCAGCAACGGTAA
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Coding sequence (CDS) from alignment at chr14:626003..627326+

>NO14G02060.1 ID=NO14G02060.1|Name=NO14G02060.1|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at chr14:626003..627326+ (Nannochloropsis oceanica)
ATGGACGACAAGGGAGGTCGTACACGACCAGGCCCAAAGGCGAGAGCAGA
AGCATTCTTTTCGCCGTCGAGCATCACAGCACCCACGGCAAGGGGGACTT
CGGGTAGCTTGTCCAGGTCTTCCGCATCTTCCTCGTCAGGATCAGGATGG
AAAGATCGGCTAAAACAACGATGCCTCAAACGGGTGCGTGACGAGCGCGG
TCGCCTCATCCAGGAGCTGCGGGGAATCAAGTCTCCTCAGCCCTCGGGAT
CCTCTTTGCGTCCTTCCACCCTGAACGCCTTGTCACCGACCCGCTTGAAC
CAACCACGACCTGGAGGAAGTTATGACGGGCCGCGATGTCCCACCCCGTC
GTTTATAAGCAGTGCCGTCATGTCCATTTTGCAAGACGAGATGCGAGCGG
GCAGTCGAACTCAAGTAGAAGGGGAGGCAGGCGGGAACGAGCTGGAAAAG
GATGAGCAGCTGGTTTCCCCGATAACATTGATGTCAACGGCGGATCTGTC
AGAAGATCAGCGACACCAGCGACGACAACAACAGCAAACAAACAACTTCA
CGACTCCATCGCAAGGGCCTCCCGCCGGCCGGCGAGGGAGCACCAGAGCA
CACCTGTCCATGGACGAGCTTATCAAGAACAACAAGGAATGGAAGGAAGA
TGACAAAGACGTTGAAGATGGAGTCGATGCCTTATCTCCCGAGGAGCAAC
TAGAGCTGATGCAATGTATTGAGGAGGCTTTGCAAGCCGAAGTGCGTGCC
GCAGAGGAACGCGAATTGGAAGAATACTCACGACTGGAAAATCATGAGAT
CGAAGCGTCTGTTGAAGCGTTGTATGATGACGATATCCTCCTATGTGCGG
ATGATGTGGCCGTGCTATGCCCCTGTTGTAAGGCAAATTTTTTGTTGTGT
CAGAACGGGGAGGCGTTCTGTGCGTGTGGCTTGCGAGTGGAGGCCACGAA
GGGGGCAGGGAGTTTGGCATGGCTGCAAGAGCTGTTGGCAGAGGTGTATG
CGCATCACAAAGGGATGTGTGTGGTCAAGGAGCCGGTATTTTTCCAGAGA
GGCATGGGTGATCTGTGGGTGGAATGTGTGACGTGTAGTTGGTCGGCACA
AATATTGTGA
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Synonyms
Publications