NO14G02010, NO14G02010 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO14G02010
Unique Name	NO14G02010
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2924
Alignment location	chr14:613395..616318 -

Link to JBrowse

Properties


Property Name	Value
Description	BolA-like family protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr14	genome	chr14:613395..616318 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036065	BolA-like_sf
IPR002634	BolA

Homology

[Close]

BLAST of NO14G02010 vs. NCBI_GenBank
Match: EWM24605.1 (BolA-like family protein [Nannochloropsis gaditana])

HSP 1 Score: 169.5 bits (428), Expect = 7.600e-39
Identity = 96/157 (61.15%), Postives = 112/157 (71.34%), Query Frame = 0

Query:    1 MLFRTSAILARHSSR-----TQTAAALRHLSRSS-TNIMTIPC----------GPVQKSIQDKLQDALTPAHLQIINESSSHNVPKGSETHFKVVAISALFEGKGLLARHRLINGILKEELDTGVHALSIVAKTASEWEKVQGAVPASPACRGGSKK 142
            ML R  + L R  +R     T +A  +R  S SS T   +  C          GP+Q  I+ KLQ AL PAHLQ+INES SHNVPKGSETHFKVVA+S++FEGK LLARHRLING+L EEL+ G+HALSIVAKTASEWEK +GAVP SPACRGGS+K
Sbjct:    1 MLGRVPSFLVRSCARAEAPITSSALPVRLQSPSSRTMSNSATCAKRDHSAQLGGPIQSCIERKLQAALVPAHLQVINESHSHNVPKGSETHFKVVAVSSMFEGKALLARHRLINGLLSEELEAGIHALSIVAKTASEWEKAEGAVPPSPACRGGSQK 157

[Close]

BLAST of NO14G02010 vs. NCBI_GenBank
Match: XP_013170833.1 (PREDICTED: bolA-like protein DDB_G0274169 [Papilio xuthus])

HSP 1 Score: 131.7 bits (330), Expect = 1.800e-27
Identity = 64/118 (54.24%), Postives = 84/118 (71.19%), Query Frame = 0

Query:   24 HLSRSSTNIMTIPCGPVQKSIQDKLQDALTPAHLQIINESSSHNVPKGSETHFKVVAISALFEGKGLLARHRLINGILKEELDTGVHALSIVAKTASEWEKVQGAVPASPACRGGSKK 142
            HL +     M++  G V  SI++KLQ++L   HL +INES  HNVPKG+ETHFKVV +S  F+G  L+ RHRL+N ILKEEL  GVHALSIVAKT  +W++ +  + +SP+CRGG  K
Sbjct:   13 HLGKIHLVNMSVESGMVANSIRNKLQNSLEATHLDVINESYMHNVPKGAETHFKVVVVSDKFDGLALIKRHRLVNDILKEELQNGVHALSIVAKTTKQWDESEKIIDSSPSCRGGFGK 130

[Close]

BLAST of NO14G02010 vs. NCBI_GenBank
Match: XP_008865784.1 (hypothetical protein H310_03625, partial [Aphanomyces invadans] >ETW06007.1 hypothetical protein H310_03625, partial [Aphanomyces invadans])

HSP 1 Score: 131.0 bits (328), Expect = 3.000e-27
Identity = 67/113 (59.29%), Postives = 83/113 (73.45%), Query Frame = 0

Query:   26 SRSSTNIMTIPCGPVQKSIQDKLQDALTPAHLQIINESSSHNVPKGSETHFKVVAISALFEGKGLLARHRLINGILKEELDTGVHALSIVAKTASEWEKVQGAVPASPACRGG 139
            S S+  +MT   GP+  SIQ KLQDA  P+HL+++NES  HNVPKGSETHFKVV +SA FEGK L+ RHRL+N +L +ELD GVHALSI +KT S+W+     V  SP+C GG
Sbjct:   15 SSSAKQLMT-EQGPIFSSIQKKLQDAFQPSHLEVLNESYMHNVPKGSETHFKVVVVSAAFEGKPLIQRHRLVNQVLADELDGGVHALSIQSKTPSQWD-ANSTVRPSPSCLGG 125

[Close]

BLAST of NO14G02010 vs. NCBI_GenBank
Match: XP_013144955.1 (PREDICTED: bolA-like protein DDB_G0274169 isoform X1 [Papilio polytes])

HSP 1 Score: 131.0 bits (328), Expect = 3.000e-27
Identity = 64/104 (61.54%), Postives = 78/104 (75.00%), Query Frame = 0

Query:   38 GPVQKSIQDKLQDALTPAHLQIINESSSHNVPKGSETHFKVVAISALFEGKGLLARHRLINGILKEELDTGVHALSIVAKTASEWEKVQGAVPASPACRGGSKK 142
            G V  SIQ+KLQ AL   HL++INES  HNVPKG+ETHFKVV +S  F+G  L+ RHRL+N ILKEEL  GVHALSIVAKT  +W++ +  V +SP+CRGG  K
Sbjct:   26 GVVANSIQNKLQTALEATHLEVINESYMHNVPKGAETHFKVVVVSDKFDGLALIKRHRLVNDILKEELKNGVHALSIVAKTTKQWDESEKIVESSPSCRGGFGK 129

[Close]

BLAST of NO14G02010 vs. NCBI_GenBank
Match: XP_013144956.1 (PREDICTED: bolA-like protein DDB_G0274169 isoform X2 [Papilio polytes])

HSP 1 Score: 131.0 bits (328), Expect = 3.000e-27
Identity = 64/104 (61.54%), Postives = 78/104 (75.00%), Query Frame = 0

Query:   38 GPVQKSIQDKLQDALTPAHLQIINESSSHNVPKGSETHFKVVAISALFEGKGLLARHRLINGILKEELDTGVHALSIVAKTASEWEKVQGAVPASPACRGGSKK 142
            G V  SIQ+KLQ AL   HL++INES  HNVPKG+ETHFKVV +S  F+G  L+ RHRL+N ILKEEL  GVHALSIVAKT  +W++ +  V +SP+CRGG  K
Sbjct:   22 GVVANSIQNKLQTALEATHLEVINESYMHNVPKGAETHFKVVVVSDKFDGLALIKRHRLVNDILKEELKNGVHALSIVAKTTKQWDESEKIVESSPSCRGGFGK 125

[Close]

BLAST of NO14G02010 vs. NCBI_GenBank
Match: KPJ03389.1 (BolA-like protein [Papilio xuthus])

HSP 1 Score: 130.6 bits (327), Expect = 3.900e-27
Identity = 62/109 (56.88%), Postives = 81/109 (74.31%), Query Frame = 0

Query:   33 MTIPCGPVQKSIQDKLQDALTPAHLQIINESSSHNVPKGSETHFKVVAISALFEGKGLLARHRLINGILKEELDTGVHALSIVAKTASEWEKVQGAVPASPACRGGSKK 142
            M++  G V  SI++KLQ++L   HL +INES  HNVPKG+ETHFKVV +S  F+G  L+ RHRL+N ILKEEL  GVHALSIVAKT  +W++ +  + +SP+CRGG  K
Sbjct:   69 MSVESGVVANSIRNKLQNSLEATHLDVINESYMHNVPKGAETHFKVVVVSDKFDGLALIKRHRLVNDILKEELQNGVHALSIVAKTTKQWDESEKIIDSSPSCRGGFGK 177

[Close]

BLAST of NO14G02010 vs. NCBI_GenBank
Match: XP_022318904.1 (uncharacterized protein LOC111121765 [Crassostrea virginica])

HSP 1 Score: 130.6 bits (327), Expect = 3.900e-27
Identity = 62/101 (61.39%), Postives = 76/101 (75.25%), Query Frame = 0

Query:   39 PVQKSIQDKLQDALTPAHLQIINESSSHNVPKGSETHFKVVAISALFEGKGLLARHRLINGILKEELDTGVHALSIVAKTASEWEKVQGAVPASPACRGGS 140
            P+++SI  KL     P HL++INESS HNVPKGSETHFKVV IS  FEG  L+ RHRL+N +LKEEL+ GVHALSI+AKT ++WE+    V  SP CRGG+
Sbjct:   22 PIEESISKKLSSKFQPQHLEVINESSKHNVPKGSETHFKVVVISDTFEGMPLIKRHRLVNEVLKEELENGVHALSIMAKTQTQWEESGQHVSKSPPCRGGT 122

[Close]

BLAST of NO14G02010 vs. NCBI_GenBank
Match: XP_014370362.1 (PREDICTED: bolA-like protein DDB_G0274169 [Papilio machaon] >KPJ05992.1 BolA-like protein [Papilio machaon])

HSP 1 Score: 130.2 bits (326), Expect = 5.100e-27
Identity = 64/109 (58.72%), Postives = 79/109 (72.48%), Query Frame = 0

Query:   33 MTIPCGPVQKSIQDKLQDALTPAHLQIINESSSHNVPKGSETHFKVVAISALFEGKGLLARHRLINGILKEELDTGVHALSIVAKTASEWEKVQGAVPASPACRGGSKK 142
            M+   G V  SI++KLQ AL   HL +INES  HNVPKGSETHFKVV +S  F+G  L+ RHRL+N ILKEEL  GVHALSIVAKT  +W++ +  + +SP+CRGG  K
Sbjct:    1 MSSESGVVANSIRNKLQTALEATHLDVINESYMHNVPKGSETHFKVVVVSDKFDGLALIKRHRLVNDILKEELQNGVHALSIVAKTTKQWDESEKIIESSPSCRGGFGK 109

[Close]

BLAST of NO14G02010 vs. NCBI_GenBank
Match: XP_022315160.1 (uncharacterized protein LOC111119363 [Crassostrea virginica])

HSP 1 Score: 130.2 bits (326), Expect = 5.100e-27
Identity = 62/101 (61.39%), Postives = 76/101 (75.25%), Query Frame = 0

Query:   39 PVQKSIQDKLQDALTPAHLQIINESSSHNVPKGSETHFKVVAISALFEGKGLLARHRLINGILKEELDTGVHALSIVAKTASEWEKVQGAVPASPACRGGS 140
            P+++SI  KL     P HL++INESS HNVPKGSETHFKVV IS  FEG  L+ RHRL+N +LKEEL+ GVHALSI+AKT ++WE+    V  SP CRGG+
Sbjct:   22 PIEESISKKLSSKFQPQHLEVINESSKHNVPKGSETHFKVVIISDTFEGMPLIKRHRLVNEVLKEELENGVHALSIMAKTQTQWEESGQHVSKSPPCRGGT 122

[Close]

BLAST of NO14G02010 vs. NCBI_GenBank
Match: XP_011350556.1 (PREDICTED: bolA-like protein DDB_G0274169 isoform X4 [Ooceraea biroi] >EZA62642.1 BolA-like protein [Ooceraea biroi])

HSP 1 Score: 129.4 bits (324), Expect = 8.800e-27
Identity = 63/104 (60.58%), Postives = 75/104 (72.12%), Query Frame = 0

Query:   38 GPVQKSIQDKLQDALTPAHLQIINESSSHNVPKGSETHFKVVAISALFEGKGLLARHRLINGILKEELDTGVHALSIVAKTASEWEKVQGAVPASPACRGGSKK 142
            GP + SI++KLQ AL P H  IINES  HNVPKGSETHFK+V +S  F  + L+ RHR++N +L+ EL TGVHALSIVAKT  +WE     V ASPACRGG  K
Sbjct:    9 GPTENSIREKLQVALKPLHCDIINESYMHNVPKGSETHFKIVVVSEKFNQQSLIKRHRMVNELLQAELQTGVHALSIVAKTPEQWEASSKVVTASPACRGGFGK 112

The following BLAST results are available for this feature:

BLAST of NO14G02010 vs. NCBI_GenBank

BLAST of NO14G02010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM24605.1	7.600e-39	61.15	BolA-like family protein [Nannochloropsis gaditana...	[more]
XP_013170833.1	1.800e-27	54.24	PREDICTED: bolA-like protein DDB_G0274169 [Papilio...	[more]
XP_008865784.1	3.000e-27	59.29	hypothetical protein H310_03625, partial [Aphanomy...	[more]
XP_013144955.1	3.000e-27	61.54	PREDICTED: bolA-like protein DDB_G0274169 isoform ...	[more]
XP_013144956.1	3.000e-27	61.54	PREDICTED: bolA-like protein DDB_G0274169 isoform ...	[more]
KPJ03389.1	3.900e-27	56.88	BolA-like protein [Papilio xuthus]	[more]
XP_022318904.1	3.900e-27	61.39	uncharacterized protein LOC111121765 [Crassostrea ...	[more]
XP_014370362.1	5.100e-27	58.72	PREDICTED: bolA-like protein DDB_G0274169 [Papilio...	[more]
XP_022315160.1	5.100e-27	61.39	uncharacterized protein LOC111119363 [Crassostrea ...	[more]
XP_011350556.1	8.800e-27	60.58	PREDICTED: bolA-like protein DDB_G0274169 isoform ...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniR069	ncniR069	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR023	ngnoR023	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO14G02010.2	NO14G02010.2-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide
NO14G02010.1	NO14G02010.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590270	gene_5773	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100171g3	gene5877	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO14G02010.2	NO14G02010.2	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA
NO14G02010.1	NO14G02010.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence
protein sequence

gene sequence

>NO14G02010 ID=NO14G02010|Name=NO14G02010|organism=Nannochloropsis oceanica|type=gene|length=2924bp
GCAAGCTCTCGGTATACATTAGATCCGAGCTTCGAGCTTCTTCAGGTAAA
CTTTATGTTTCTTCTCATGCTTGCTTAATTACGTGTACATCCATTTCGTT
GAATTTTCCTTCCTCCTTATTGTAAGATCGCATCATCTCAAGTCCACGAC
GGCAAACGCTGAGTCTTCCCACATGACCGCGTGGTGGTTCTTGTAGATTT
GGGGGTCGGGCAGAGGATGAGGGTGGAAACCGCGTAGTTCGCACCTCTGA
ATAAGCTGCAAGCCCTCGGGTTCGGTCAGGCGGAAGACGCCCACTTCTGG
CTTCTGAGGATTGCACAGCGCGACGACCACGGCGACGGCTTCTGGCAACA
TGGTTTGATAGCCGCAATGCGTGTGGATGTCGACAGAAGACATGAAGCAC
TTCTGACTCGGGTGCGTATGGATCCAGCCAAGCTGCAGCAAATTCTTCCC
ATCTGCCGAACAGCAGTACCCAATGAGTTCCTCTTCGTGTGTCATGCCGA
CGGTGTCCGACGTGCCCTCTTGCTTGGGTATAATTAGAGTGGTGCAACGC
ATGAGCCCTGCCCCGTCTTGGACCCCAGCGAGAACACCGCATGTCTCGAT
GCCATCTGGTGGCTACGAGAAGGAGAGTAGATGAGAGAAGGAATGACATC
AGGGTTAATATGATCTTCATTGAGGCCCCATAGAATAATCCGAGGGAAAC
GACGAGAAAACGGAGTATGACAAGCATACATCCAACCACCCCTGTCATCA
CTCCTCCTCTCATCCCACCAGCACCGAAGCACGCACCTTCCTACTATTCG
CATCGGCAATCTCTAGAAACTTGCCCACCAGCCCACTCGGTAGCACCATC
CTCCTCAACATCCCCCTCTTCCTAAACCAAACCTCCTGCCCGGGGACCGC
AAACGGAGAAACCATCAACTCCCCCTTCTTCCCCTCCCCCTCCTCCTCCT
CCTCTTTCTCCTTCTTCTTCCCCCCCACAGGCGAGGAAAGACAAGGGTAG
TAATGCCGTACTCTCGGTGATGCAGGGTCATCCGCCTCCTCCAACCGCAA
GGAATTAAATGCGGTTTCGAGCTCAGTGGCGCTCAAGCCGCTCTTCACAC
TGTTGTCGGCGTCCACCGGAGGAAGAGGAGGGCCATCATCCAAAAACAAA
GGAGGCGCCGACGGCTCGAGCATCATGCTCCCAGATATGCTTGCCACTGA
CAACGGTGAATGTAGCTCGTCCTCGAGCAGGTGTCCAACCTCTCCCTCCT
TTCCTCGGCCCAGGGGACTGAGCAATCGCTTGCTAGACAAGGCATCCCAT
CCTCTTAAATGGCACAGGCGCCTTTCCAAGTCATCTTCCATAGCTTGGCC
TGGTGATGATGGAGGAGCGGCTGATGCAACGGGAGGGCAAGAAGGAGAAG
CCACACCTCGACAACAGCGCTCGGCGATTTCTGCTGTGATCGCGCCATTG
ACCTCTTCCAGTGCCTTAAGCGCCTGTCGACGCTCACCTACTAACCAGTT
CTTTTCACGGCCGAAAGTGGCTTCTTTGTAGGCAATGTGCTCGGGAATGC
AATCGAGGGCGAGGCGGAGGAAGCGCTTATAGAAAATGTAGGCCTGTTGG
Ggtacgtgcggtgtggtaggagggcagagggacggagaaaagatggtgtg
tgtttgaaagagttgatcatcccaaagcaaggaaaattttcccttcagac
atcattacgatcaaattattcctcattcagATACGGATTTATCTTCCCTA
TGCTTGATGTCGGCCGAAGGCATGCCTTTCCAACCCCTCCTTCCCTCCCA
GAAGGGAAGTGCGACGTACCCGATCGATGTCGCGCGATTCCCTGAATTGC
TGTGCCTGAGCCAGGACCTGCTTGCTCATCCCATAGTAAACACTGAGACG
GGTGCTGTCTTGAAGCTTGGGAACCTCCACATACCTATGTCAGGGAGGGA
GGAGGGAGGGTTTGATCATGCTTCCTACAACTCGCGGCAGCAGGTGACTG
CTCTTCTTTCTACGCACCTGTCCAGCTCCTTCAAATGGCGCTTGGAGAGC
TCCTCCACGACTGCACCAGCAGGCGACGCCACGGGCATTGGAGCCGTGTC
TGTGTATGAGGTGGATAAGGAGGGAGTGAGGGTGTGATGTAGTGGCGGCG
AGGCGGCCTTCCCTCCTGCCGTTGCGTCTATCTGATCTCAAATTACGTAT
ACCCGATTCCGACTGAAGCTTAAGgtactagactgattcctcaatgcttt
cattggcaaagcatgggcgcctggggggctatgctgacattgtctggcac
ttctgtgcacgaattcaacctccccactcctcactcctctacattcgcga
cactcaacacacaacagAGTCCAAAGAAAGCAGCACACCCAGGAGTACAG
CATCTTTCTCATCTGCACTCATACTAGCCTTGTCTCCTACATGTTATTCC
GCACCTCGGCGATCCTCGCAAGACATAGCTCAAGAACCCAGACCGCTGCA
GCTCTCCGTCATCTCAGTAGGAGCAGCACCAACATCATGACCATCCCTTG
CGGGCCAGTCCAAAAATCCATCCAAGACAAGCTCCAAGACGCCTTGACCC
CCGCCCATTTGCAGATCATCAACGAAAGCAGCAGTCACAACGTGCCCAAG
GGCTCGGAGACACATTTCAAGGTGGTGGCGATCTCGGCCTTGTTCGAAGG
CAAGGGTTTGCTAGCCCGGCATCGACTGATCAATGGGATTCTCAAAGAGG
AGTTAGACACGGGGGTACACGCCCTTTCGATTGTGGCTAAGACGGCATCG
GAGTGGGAGAAGGTGCAAGGCGCTGTGCCGGCCTCACCGGCCTGCAGAGG
GGGAAGCAAGAAATGAGGATAGGACGGAATGACGACAAAAAAGGAAATGA
AATGCAAAATCGATGTGTACTGGA

protein sequence of NO14G02010.2

>NO14G02010.2-protein ID=NO14G02010.2-protein|Name=NO14G02010.2|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MLFRTSAILARHSSRTQTAAALRHLSRSSTNIMTIPCGPVQKSIQDKLQD
ALTPAHLQIINESSSHNVPKGSETHFKVVAISALFEGKGLLARHRLINGI
LKEELDTGVHALSIVAKTASEWEKVQGAVPASPACRGGSKK*

protein sequence of NO14G02010.1

>NO14G02010.1-protein ID=NO14G02010.1-protein|Name=NO14G02010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MLFRTSAILARHSSRTQTAAALRHLSRSSTNIMTIPCGPVQKSIQDKLQD
ALTPAHLQIINESSSHNVPKGSETHFKVVAISALFEGKGLLARHRLINGI
LKEELDTGVHALSIVAKTASEWEKVQGAVPASPACRGGSKK*

Synonyms

Publications