NO14G02010.1, NO14G02010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02010.1
Unique NameNO14G02010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2652
Alignment locationchr14:613395..616318 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:613395..616318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO14G02010.1 vs.
Match: EWM24605.1 (BolA-like family protein [Nannochloropsis gaditana])

HSP 1 Score: 169.5 bits (428), Expect = 7.600e-39
Identity = 95/157 (60.51%), Postives = 112/157 (71.34%), Query Frame = 0
Query:    1 MLFRTSAILARHSSR-----TQTAAALRHLSRSSTNIM-TIPC----------GPVQKSIQDKLQDALTPAHLQIINESSSHNVPKGSETHFKVVAISALFEGKGLLARHRLINGILKEELDTGVHALSIVAKTASEWEKVQGAVPASPACRGGSKK 142
            ML R  + L R  +R     T +A  +R  S SS  +  +  C          GP+Q  I+ KLQ AL PAHLQ+INES SHNVPKGSETHFKVVA+S++FEGK LLARHRLING+L EEL+ G+HALSIVAKTASEWEK +GAVP SPACRGGS+K
Sbjct:    1 MLGRVPSFLVRSCARAEAPITSSALPVRLQSPSSRTMSNSATCAKRDHSAQLGGPIQSCIERKLQAALVPAHLQVINESHSHNVPKGSETHFKVVAVSSMFEGKALLARHRLINGLLSEELEAGIHALSIVAKTASEWEKAEGAVPPSPACRGGSQK 157          
The following BLAST results are available for this feature:
BLAST of NO14G02010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24605.17.600e-3960.51BolA-like family protein [Nannochloropsis gaditana... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02010NO14G02010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02010.1NO14G02010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02010.1.cds1NO14G02010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02010.1 ID=NO14G02010.1|Name=NO14G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2652bp
GCAAGCTCTCGGTATACATTAGATCCGAGCTTCGAGCTTCTTCAGGTAAA
CTTTATGTTTCTTCTCATGCTTGCTTAATTACGTGTACATCCATTTCGTT
GAATTTTCCTTCCTCCTTATTGTAAGATCGCATCATCTCAAGTCCACGAC
GGCAAACGCTGAGTCTTCCCACATGACCGCGTGGTGGTTCTTGTAGATTT
GGGGGTCGGGCAGAGGATGAGGGTGGAAACCGCGTAGTTCGCACCTCTGA
ATAAGCTGCAAGCCCTCGGGTTCGGTCAGGCGGAAGACGCCCACTTCTGG
CTTCTGAGGATTGCACAGCGCGACGACCACGGCGACGGCTTCTGGCAACA
TGGTTTGATAGCCGCAATGCGTGTGGATGTCGACAGAAGACATGAAGCAC
TTCTGACTCGGGTGCGTATGGATCCAGCCAAGCTGCAGCAAATTCTTCCC
ATCTGCCGAACAGCAGTACCCAATGAGTTCCTCTTCGTGTGTCATGCCGA
CGGTGTCCGACGTGCCCTCTTGCTTGGGTATAATTAGAGTGGTGCAACGC
ATGAGCCCTGCCCCGTCTTGGACCCCAGCGAGAACACCGCATGTCTCGAT
GCCATCTGGTGGCTACGAGAAGGAGAGTAGATGAGAGAAGGAATGACATC
AGGGTTAATATGATCTTCATTGAGGCCCCATAGAATAATCCGAGGGAAAC
GACGAGAAAACGGAGTATGACAAGCATACATCCAACCACCCCTGTCATCA
CTCCTCCTCTCATCCCACCAGCACCGAAGCACGCACCTTCCTACTATTCG
CATCGGCAATCTCTAGAAACTTGCCCACCAGCCCACTCGGTAGCACCATC
CTCCTCAACATCCCCCTCTTCCTAAACCAAACCTCCTGCCCGGGGACCGC
AAACGGAGAAACCATCAACTCCCCCTTCTTCCCCTCCCCCTCCTCCTCCT
CCTCTTTCTCCTTCTTCTTCCCCCCCACAGGCGAGGAAAGACAAGGGTAG
TAATGCCGTACTCTCGGTGATGCAGGGTCATCCGCCTCCTCCAACCGCAA
GGAATTAAATGCGGTTTCGAGCTCAGTGGCGCTCAAGCCGCTCTTCACAC
TGTTGTCGGCGTCCACCGGAGGAAGAGGAGGGCCATCATCCAAAAACAAA
GGAGGCGCCGACGGCTCGAGCATCATGCTCCCAGATATGCTTGCCACTGA
CAACGGTGAATGTAGCTCGTCCTCGAGCAGGTGTCCAACCTCTCCCTCCT
TTCCTCGGCCCAGGGGACTGAGCAATCGCTTGCTAGACAAGGCATCCCAT
CCTCTTAAATGGCACAGGCGCCTTTCCAAGTCATCTTCCATAGCTTGGCC
TGGTGATGATGGAGGAGCGGCTGATGCAACGGGAGGGCAAGAAGGAGAAG
CCACACCTCGACAACAGCGCTCGGCGATTTCTGCTGTGATCGCGCCATTG
ACCTCTTCCAGTGCCTTAAGCGCCTGTCGACGCTCACCTACTAACCAGTT
CTTTTCACGGCCGAAAGTGGCTTCTTTGTAGGCAATGTGCTCGGGAATGC
AATCGAGGGCGAGGCGGAGGAAGCGCTTATAGAAAATGTAGGCCTGTTGG
GATACGGATTTATCTTCCCTATGCTTGATGTCGGCCGAAGGCATGCCTTT
CCAACCCCTCCTTCCCTCCCAGAAGGGAAGTGCGACGTACCCGATCGATG
TCGCGCGATTCCCTGAATTGCTGTGCCTGAGCCAGGACCTGCTTGCTCAT
CCCATAGTAAACACTGAGACGGGTGCTGTCTTGAAGCTTGGGAACCTCCA
CATACCTATGTCAGGGAGGGAGGAGGGAGGGTTTGATCATGCTTCCTACA
ACTCGCGGCAGCAGGTGACTGCTCTTCTTTCTACGCACCTGTCCAGCTCC
TTCAAATGGCGCTTGGAGAGCTCCTCCACGACTGCACCAGCAGGCGACGC
CACGGGCATTGGAGCCGTGTCTGTGTATGAGGTGGATAAGGAGGGAGTGA
GGGTGTGATGTAGTGGCGGCGAGGCGGCCTTCCCTCCTGCCGTTGCGTCT
ATCTGATCTCAAATTACGTATACCCGATTCCGACTGAAGCTTAAGAGTCC
AAAGAAAGCAGCACACCCAGGAGTACAGCATCTTTCTCATCTGCACTCAT
ACTAGCCTTGTCTCCTACATGTTATTCCGCACCTCGGCGATCCTCGCAAG
ACATAGCTCAAGAACCCAGACCGCTGCAGCTCTCCGTCATCTCAGTAGGA
GCAGCACCAACATCATGACCATCCCTTGCGGGCCAGTCCAAAAATCCATC
CAAGACAAGCTCCAAGACGCCTTGACCCCCGCCCATTTGCAGATCATCAA
CGAAAGCAGCAGTCACAACGTGCCCAAGGGCTCGGAGACACATTTCAAGG
TGGTGGCGATCTCGGCCTTGTTCGAAGGCAAGGGTTTGCTAGCCCGGCAT
CGACTGATCAATGGGATTCTCAAAGAGGAGTTAGACACGGGGGTACACGC
CCTTTCGATTGTGGCTAAGACGGCATCGGAGTGGGAGAAGGTGCAAGGCG
CTGTGCCGGCCTCACCGGCCTGCAGAGGGGGAAGCAAGAAATGAGGATAG
GACGGAATGACGACAAAAAAGGAAATGAAATGCAAAATCGATGTGTACTG
GA
back to top

protein sequence of NO14G02010.1

>NO14G02010.1-protein ID=NO14G02010.1-protein|Name=NO14G02010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MLFRTSAILARHSSRTQTAAALRHLSRSSTNIMTIPCGPVQKSIQDKLQD
ALTPAHLQIINESSSHNVPKGSETHFKVVAISALFEGKGLLARHRLINGI
LKEELDTGVHALSIVAKTASEWEKVQGAVPASPACRGGSKK*
back to top

mRNA from alignment at chr14:613395..616318-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02010.1 ID=NO14G02010.1|Name=NO14G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2924bp|location=Sequence derived from alignment at chr14:613395..616318- (Nannochloropsis oceanica)
GCAAGCTCTCGGTATACATTAGATCCGAGCTTCGAGCTTCTTCAGGTAAA CTTTATGTTTCTTCTCATGCTTGCTTAATTACGTGTACATCCATTTCGTT GAATTTTCCTTCCTCCTTATTGTAAGATCGCATCATCTCAAGTCCACGAC GGCAAACGCTGAGTCTTCCCACATGACCGCGTGGTGGTTCTTGTAGATTT GGGGGTCGGGCAGAGGATGAGGGTGGAAACCGCGTAGTTCGCACCTCTGA ATAAGCTGCAAGCCCTCGGGTTCGGTCAGGCGGAAGACGCCCACTTCTGG CTTCTGAGGATTGCACAGCGCGACGACCACGGCGACGGCTTCTGGCAACA TGGTTTGATAGCCGCAATGCGTGTGGATGTCGACAGAAGACATGAAGCAC TTCTGACTCGGGTGCGTATGGATCCAGCCAAGCTGCAGCAAATTCTTCCC ATCTGCCGAACAGCAGTACCCAATGAGTTCCTCTTCGTGTGTCATGCCGA CGGTGTCCGACGTGCCCTCTTGCTTGGGTATAATTAGAGTGGTGCAACGC ATGAGCCCTGCCCCGTCTTGGACCCCAGCGAGAACACCGCATGTCTCGAT GCCATCTGGTGGCTACGAGAAGGAGAGTAGATGAGAGAAGGAATGACATC AGGGTTAATATGATCTTCATTGAGGCCCCATAGAATAATCCGAGGGAAAC GACGAGAAAACGGAGTATGACAAGCATACATCCAACCACCCCTGTCATCA CTCCTCCTCTCATCCCACCAGCACCGAAGCACGCACCTTCCTACTATTCG CATCGGCAATCTCTAGAAACTTGCCCACCAGCCCACTCGGTAGCACCATC CTCCTCAACATCCCCCTCTTCCTAAACCAAACCTCCTGCCCGGGGACCGC AAACGGAGAAACCATCAACTCCCCCTTCTTCCCCTCCCCCTCCTCCTCCT CCTCTTTCTCCTTCTTCTTCCCCCCCACAGGCGAGGAAAGACAAGGGTAG TAATGCCGTACTCTCGGTGATGCAGGGTCATCCGCCTCCTCCAACCGCAA GGAATTAAATGCGGTTTCGAGCTCAGTGGCGCTCAAGCCGCTCTTCACAC TGTTGTCGGCGTCCACCGGAGGAAGAGGAGGGCCATCATCCAAAAACAAA GGAGGCGCCGACGGCTCGAGCATCATGCTCCCAGATATGCTTGCCACTGA CAACGGTGAATGTAGCTCGTCCTCGAGCAGGTGTCCAACCTCTCCCTCCT TTCCTCGGCCCAGGGGACTGAGCAATCGCTTGCTAGACAAGGCATCCCAT CCTCTTAAATGGCACAGGCGCCTTTCCAAGTCATCTTCCATAGCTTGGCC TGGTGATGATGGAGGAGCGGCTGATGCAACGGGAGGGCAAGAAGGAGAAG CCACACCTCGACAACAGCGCTCGGCGATTTCTGCTGTGATCGCGCCATTG ACCTCTTCCAGTGCCTTAAGCGCCTGTCGACGCTCACCTACTAACCAGTT CTTTTCACGGCCGAAAGTGGCTTCTTTGTAGGCAATGTGCTCGGGAATGC AATCGAGGGCGAGGCGGAGGAAGCGCTTATAGAAAATGTAGGCCTGTTGG GGTACGTGCGGTGTGGTAGGAGGGCAGAGGGACGGAGAAAAGATGGTGTG TGTTTGAAAGAGTTGATCATCCCAAAGCAAGGAAAATTTTCCCTTCAGAC ATCATTACGATCAAATTATTCCTCATTCAGATACGGATTTATCTTCCCTA TGCTTGATGTCGGCCGAAGGCATGCCTTTCCAACCCCTCCTTCCCTCCCA GAAGGGAAGTGCGACGTACCCGATCGATGTCGCGCGATTCCCTGAATTGC TGTGCCTGAGCCAGGACCTGCTTGCTCATCCCATAGTAAACACTGAGACG GGTGCTGTCTTGAAGCTTGGGAACCTCCACATACCTATGTCAGGGAGGGA GGAGGGAGGGTTTGATCATGCTTCCTACAACTCGCGGCAGCAGGTGACTG CTCTTCTTTCTACGCACCTGTCCAGCTCCTTCAAATGGCGCTTGGAGAGC TCCTCCACGACTGCACCAGCAGGCGACGCCACGGGCATTGGAGCCGTGTC TGTGTATGAGGTGGATAAGGAGGGAGTGAGGGTGTGATGTAGTGGCGGCG AGGCGGCCTTCCCTCCTGCCGTTGCGTCTATCTGATCTCAAATTACGTAT ACCCGATTCCGACTGAAGCTTAAGGTACTAGACTGATTCCTCAATGCTTT CATTGGCAAAGCATGGGCGCCTGGGGGGCTATGCTGACATTGTCTGGCAC TTCTGTGCACGAATTCAACCTCCCCACTCCTCACTCCTCTACATTCGCGA CACTCAACACACAACAGAGTCCAAAGAAAGCAGCACACCCAGGAGTACAG CATCTTTCTCATCTGCACTCATACTAGCCTTGTCTCCTACATGTTATTCC GCACCTCGGCGATCCTCGCAAGACATAGCTCAAGAACCCAGACCGCTGCA GCTCTCCGTCATCTCAGTAGGAGCAGCACCAACATCATGACCATCCCTTG CGGGCCAGTCCAAAAATCCATCCAAGACAAGCTCCAAGACGCCTTGACCC CCGCCCATTTGCAGATCATCAACGAAAGCAGCAGTCACAACGTGCCCAAG GGCTCGGAGACACATTTCAAGGTGGTGGCGATCTCGGCCTTGTTCGAAGG CAAGGGTTTGCTAGCCCGGCATCGACTGATCAATGGGATTCTCAAAGAGG AGTTAGACACGGGGGTACACGCCCTTTCGATTGTGGCTAAGACGGCATCG GAGTGGGAGAAGGTGCAAGGCGCTGTGCCGGCCTCACCGGCCTGCAGAGG GGGAAGCAAGAAATGAGGATAGGACGGAATGACGACAAAAAAGGAAATGA AATGCAAAATCGATGTGTACTGGA
back to top

Coding sequence (CDS) from alignment at chr14:613395..616318-

>NO14G02010.1 ID=NO14G02010.1|Name=NO14G02010.1|organism=Nannochloropsis oceanica|type=CDS|length=426bp|location=Sequence derived from alignment at chr14:613395..616318- (Nannochloropsis oceanica)
ATGTTATTCCGCACCTCGGCGATCCTCGCAAGACATAGCTCAAGAACCCA
GACCGCTGCAGCTCTCCGTCATCTCAGTAGGAGCAGCACCAACATCATGA
CCATCCCTTGCGGGCCAGTCCAAAAATCCATCCAAGACAAGCTCCAAGAC
GCCTTGACCCCCGCCCATTTGCAGATCATCAACGAAAGCAGCAGTCACAA
CGTGCCCAAGGGCTCGGAGACACATTTCAAGGTGGTGGCGATCTCGGCCT
TGTTCGAAGGCAAGGGTTTGCTAGCCCGGCATCGACTGATCAATGGGATT
CTCAAAGAGGAGTTAGACACGGGGGTACACGCCCTTTCGATTGTGGCTAA
GACGGCATCGGAGTGGGAGAAGGTGCAAGGCGCTGTGCCGGCCTCACCGG
CCTGCAGAGGGGGAAGCAAGAAATGA
back to top
Synonyms
Publications