NO14G01960, NO14G01960 (gene) Nannochloropsis oceanica

Overview
NameNO14G01960
Unique NameNO14G01960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1492
Alignment locationchr14:600035..601526 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:600035..601526 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO14G01960 vs. NCBI_GenBank
Match: EWM24633.1 (hypothetical protein Naga_100117g17 [Nannochloropsis gaditana])

HSP 1 Score: 474.6 bits (1220), Expect = 3.200e-130
Identity = 237/329 (72.04%), Postives = 268/329 (81.46%), Query Frame = 0
Query:   82 PDGSDGMPPMPLGGESEYEYESEFPDQQAEIEYMADDELLAKYRADMQNSQDQWQLNLFLKAQTGTWSGVWSEYTPVPNGGANGDTVLRMTNIYKGRQECVGDNEARTVSWRDLTLLHAADGGPLEPVVVAEHTMVPAMFRGGVGSMAADNVFSRSSVQAKEGGREGEEVFEAETWIRQGNYRTRVSFVYESKGSTEAFEAHKVVVKKERLGMQGPTAEEPELFGSSGRGIYDSSARMPGSWELSLHGGLSLAFPPLLPRGEKGAVIVDWTAGYMRFQADRLFDLPDGTLGSLEVTQIGTEDSMKFKLEEKE---AAEGLETAGVVGGE 408
            P+   G+ PMP GGESEYEY+SE+ DQQAEIEY+ DDELLA+YRADMQNS DQWQLNLFLKAQTG WSGVWSEYTP PN G NG+TVLRMTNIYKGR EC GD +AR+V WR++TLLHAADGGPLEPVVV E  M P  FRG +G+MAADNVFS S V+ K       EVFEAE WIRQG+YRTRV+FVY+S     AF+A KV+VKKERLG +GPTAEEPELFGSSGRGIYD +AR+PGSW LSLHGGLSLAFPP LPRG++GAVIVDWTAG MRFQADR+FD PDGTLGSLEVTQIGT+DS+ F + +      A+   +A   GGE
Sbjct:   97 PNLEHGVSPMPTGGESEYEYQSEYTDQQAEIEYLGDDELLARYRADMQNSNDQWQLNLFLKAQTGIWSGVWSEYTPEPNSGPNGETVLRMTNIYKGRHECEGDYDARSVWWREVTLLHAADGGPLEPVVVGERRMEPTSFRGELGAMAADNVFSCSHVRFK----GATEVFEAEIWIRQGDYRTRVTFVYKSPDPAYAFQASKVLVKKERLGKEGPTAEEPELFGSSGRGIYDPNARVPGSWVLSLHGGLSLAFPPTLPRGQRGAVIVDWTAGTMRFQADRIFDRPDGTLGSLEVTQIGTQDSLTFTIPDDADAGVAKAAASADTNGGE 421          
BLAST of NO14G01960 vs. NCBI_GenBank
Match: CBN76250.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 125.9 bits (315), Expect = 2.800e-25
Identity = 107/338 (31.66%), Postives = 151/338 (44.67%), Query Frame = 0
Query:   97 SEYEYESEFPDQQAEIEYMADDELLAKYRADMQNSQDQWQLNLFLKAQTGTWSGVWSEYT--PVPNGGANGDTVLRMTNIYKGRQECVGDNEARTV--SWRDLTLLH----AADGGPLEPVVVAE---------HTMVPAMFRGGVGSMAADNVF-SRSSVQAKEGGREGEEVFEAETWIRQGNYRTRVSFVY--------------------ESKGSTEAFEAHKVVVKKERLGMQGP--TAEEPELFGSSGRGIYD--SSARMPGSWELSLHGGLSLAFPPLLPRGEKGAVIVDWTAGYMRFQADRLFDLPDGTLGSLEVTQIGTEDSMKFKLEEK 393
            SEY YE EF + Q E E  AD+E LA++R +   + D+WQ   +     G W G W EY    +  G      +  M  I  G++        R V  S  D  +       A GG  +  V  E          T+    FRGG G+    N + S  ++    GG +G  +   E  +R  + R R  F Y                                +V V +E L    P    +EPEL+GS+G+G+YD  S +R P  + +   GGL++ FP  +  G+ G   VDWTAG  R+QADR+FD+ DG+L  LEVT+IGT+D+  F   EK
Sbjct:  141 SEYGYEPEF-ELQGE-EPNADEETLARWRLEKLLANDRWQFGKYGTQNVGNWIGSWQEYVAEDLSAGSDPESDIGAMIGIIPGKKFVATTKITRRVIESAEDTKIFEHEQGQATGGEGQGAVGYESEACPQPVVETLFSDSFRGGNGTQVVGNAYTSAETLAVAAGGADGPWI---EVGLRVQDVRMRCVFEYGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRRVFVVREGLDRLPPEDADKEPELYGSAGKGLYDPPSLSRSPLYFSIYAEGGLTMRFPLRVEEGQGGVFSVDWTAGSRRYQADRVFDVLDGSLRRLEVTEIGTQDAEVFLPMEK 473          
BLAST of NO14G01960 vs. NCBI_GenBank
Match: KOO24191.1 (conserved unknown protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 105.5 bits (262), Expect = 4.000e-19
Identity = 93/300 (31.00%), Postives = 140/300 (46.67%), Query Frame = 0
Query:   96 ESEYEYESEFPDQQAEIEYMADDELLAKYRADMQNSQDQWQLNLFLKAQTGTWSGVWSEYTPVPNGGANGDTVLRMTNIYKGRQECVGDNEARTVSWRDLTLLHAADGGPLEPVVVAEHTMVPAMFRGGVGSMAADNVFSRSSVQAKEGG---REGEEVFEAETWIRQGNYRTRVSFVY-ESKGSTEAFEAHKV----VVKKERLGMQ--GPTAEEPELFGSSGRGIYD-SSARMPGSWELSLHGGLSLAFPPLLPRGEKGAVIVDWTAGYMRFQADRLFDLPDGTLGSLEVTQIGTEDS 385
            E + + +S F     E E + D+ LL +YR    +   +WQLN F ++Q G W+G    Y          D   RM  + K  +      EAR  +   + L  +      +  + AE  +  A FR  VG+MA  + FS S   A  GG   R GE +   E  + +   R R   +Y   +G   A   + +    +V++ R G Q     A   +L G+ GRG+YD       G   L L GG++LAFP  +  G  G + +DW AG MR+Q DR + + DG+L SLE+T+I  +D+
Sbjct:  125 EEQRKDDSAFQSDTIE-EDIEDEALLEQYRQKRWDDNARWQLNTFAQSQLGKWAGHMELYL--------ADDAGRM--LPKELKSTACSCEARVCASNTIGLTESLPEAAAQLTLEAELGL--AAFRPEVGNMAVASAFSVSRRGADVGGESARAGEPLL-LELALGEAERRVRCKLLYVADRGEAAAVRPYSIAQLAIVREVRGGGQFIDGNAGSADLDGTPGRGLYDPPPGDKSGYISLYLEGGMTLAFPTSVAAGAAGVISLDWIAGSMRYQIDRKWKVFDGSLSSLELTEIRKDDA 410          
BLAST of NO14G01960 vs. NCBI_GenBank
Match: XP_009041402.1 (hypothetical protein AURANDRAFT_72648 [Aureococcus anophagefferens] >EGB03850.1 hypothetical protein AURANDRAFT_72648 [Aureococcus anophagefferens])

HSP 1 Score: 75.9 bits (185), Expect = 3.400e-10
Identity = 85/306 (27.78%), Postives = 115/306 (37.58%), Query Frame = 0
Query:  119 ELLAKYRADMQNSQDQWQLNLFLKAQTGTWSGVWSEYTPVPNG---GANGDTVLRMTNIYKGRQECVGDNEARTVSWR--DLTLLHAADGGPLEPVVVAEH------TMVPAMFR------GGVGSMAADNVFSRSSVQAKEGGREGEEVFEAETWIRQGNYRTRVSFVYE-SKGSTEAFEAHKVVVKKERLGMQGPTAEEPELFGSSGRGIYDSSARM------------PGSWELSLHGGLSLAFPPLLPRGE-------KGAVIVDWTAGYMRFQADRLFDLPDGTLGSLEVTQIGTEDSMKF 388
            E LA+ R   + SQD WQ + F KA  G+W G    Y          A  D  L +            D  A  VS +  +  +L +   G  EP   A        T+ PA FR      G +G  AA+        +A    R   +    + W R  +    +   YE + G   AF    +       G   P  +      + G G+YD   R+             G  EL L G ++ AFP  L  G         G V +D  AG MR Q DR+FD P G L S E+T I  +D+ KF
Sbjct:  205 EALAERRRVNRRSQDCWQFDQFTKAFAGSWRGAGERYVAAGRALAVAATFDAKLDLERRDDATVASAHDAWALAVSEQRTNFVVLDSLGDGAAEPAREAAAPPLGAVTLKPATFRAEARDGGELGGTAANG-------EAFSTARVDGDALVVDVWARAADDALSLRVAYEKTTGGAWAFACCDLARWCPAGGAAAPAGD------ALGTGLYDVHRRLRDMATRGALDESVGIHELRLPGRVTAAFPRTLDPGRGGLNANGGGVVSLDLVAGDMRIQVDRVFDTPLGDLASFEITDILVDDAEKF 497          
BLAST of NO14G01960 vs. NCBI_GenBank
Match: CEL93669.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 70.1 bits (170), Expect = 1.800e-8
Identity = 40/103 (38.83%), Postives = 58/103 (56.31%), Query Frame = 0
Query:  284 KVVVKKERLGMQGPTAEEPELFGSSGRGIYDSSARMPGS--WELSLHGGLSLAFPPLLPRGEKGAVIVDWTAGYMRFQADRLFDLPDGTLGSLEVTQIGTEDS 385
            ++ V +ERLG + P A E   +G  G G+YD  A   G   +EL  +G L+L+FP  +  GE GA+ +DWT    R+QADR F     +L + E T+I   D+
Sbjct:  292 QLAVIRERLG-EPPLANEDAFYGEWGHGLYDKPAERIGQNYFELFFNGHLTLSFPLSIGEGEAGALSLDWTPDMRRYQADRKFRTYGPSLRTFETTEILARDA 393          
The following BLAST results are available for this feature:
BLAST of NO14G01960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM24633.13.200e-13072.04hypothetical protein Naga_100117g17 [Nannochlorops... [more]
CBN76250.12.800e-2531.66conserved unknown protein [Ectocarpus siliculosus][more]
KOO24191.14.000e-1931.00conserved unknown protein [Chrysochromulina sp. CC... [more]
XP_009041402.13.400e-1027.78hypothetical protein AURANDRAFT_72648 [Aureococcus... [more]
CEL93669.11.800e-838.83unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL140nonsL140Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR025ngnoR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002379NSK002379Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G01960.1NO14G01960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590249gene_5767Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100117g17gene5851Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G01960.1NO14G01960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G01960 ID=NO14G01960|Name=NO14G01960|organism=Nannochloropsis oceanica|type=gene|length=1492bp
ATGCCACAGTCTCCTGCGCAGGCAACAATGGTGCATCCATTGCAAAGCCA
GGGCTCGGCCCTGAAAATTTTTCTGGTGGCAGTACTGCAGCTGATCCCCA
TACCCGTGTTGAGCTTTTTGGTGCAGCCCCCTGCCGCGCCGACGGGCCGC
TCTGTCTTGACTTCCTCTCCCCCTCCCTCTGCCTCCGTCGTCTCCGTGTT
CGTACCCGAACGGAAGCACGTAGTGGTCCGCCAGAGCATTGCTCCCGACG
GAAGTGACGGTATGCCACCCATGCCCTTGGGTGGGGAGTCCGAGTATGAG
TATGAATCGGAGTTCCCTGACCAACAAGCTgtacgtgagggagggaaagg
gggaggggacacgggatgttgaggggggagagggaagatgaggtagcgga
agaactgcacatgagggtatcaagatgaatagtcggaggggaaaggggga
aaggttgaacgtgaaaagaggcttaaagggggacctctcccttaacctga
acctggccacttgatactcgcttgcactttctcatgcatcttccctcaca
ttcttcacgtcccccgacaatcaatagGAAATAGAATACATGGCCGACGA
CGAGCTCCTTGCAAAATATCGCGCAGACATGCAAAACTCCCAAGACCAAT
GGCAGCTCAATCTCTTCCTCAAGGCCCAAACCGGTACCTGGTCGGGGGTC
TGGAGCGAGTACACCCCTGTCCCAAACGGAGGCGCCAATGGCGACACTGT
CCTCCGCATGACGAACATCTATAAGGGCCGGCAAGAGTGCGTAGGGGACA
ACGAGGCCCGCACTGTGTCGTGGCGAGATCTAACACTATTGCATGCCGCG
GACGGCGGGCCCTTGGAGCCGGTGGTGGTGGCAGAGCACACGATGGTACC
GGCCATGTTCAGGGGAGGAGTCGGATCGATGGCAGCGGATAATGTCTTCT
CTCGCTCCTCGGTCCAGGCGAAGGAGGGAGGGAGGGAGGGAGAGGAGGTC
TTCGAAGCGGAGACTTGGATTCGGCAGGGGAACTATAGGACGCGGGTGTC
GTTTGTGTACGAGAGTAAGGGGTCAACGGAGGCCTTCGAGGCGCACAAGG
TGGTGGTGAAAAAGGAAAGGCTGGGCATGCAAGGACCGACGGCGGAGGAG
CCTGAGTTGTTTGGTTCGAGTGGACGGGGCATCTACGATAGTAGTGCGCG
GATGCCGGGGTCGTGGGAGTTGTCGCTGCATGGAGGCTTGAGCCTCGCAT
TCCCGCCCCTGCTGCCGCGGGGAGAGAAAGGGGCGGTGATTGTGGACTGG
ACCGCGGGCTATATGAGGTTTCAAGCGGATCGACTCTTTGACTTACCTGA
TGGGACGTTGGGGTCGTTAGAGGTGACGCAAATCGGTACGGAGGACTCGA
TGAAATTCAAGCTTGAGGAGAAGGAGGCGGCCGAGGGTTTGGAGACAGCC
GGAGTTGTAGGGGGAGAAGTGGCGGGAGCGGACGAACCGTGA
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protein sequence of NO14G01960.1

>NO14G01960.1-protein ID=NO14G01960.1-protein|Name=NO14G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MPQSPAQATMVHPLQSQGSALKIFLVAVLQLIPIPVLSFLVQPPAAPTGR
SVLTSSPPPSASVVSVFVPERKHVVVRQSIAPDGSDGMPPMPLGGESEYE
YESEFPDQQAEIEYMADDELLAKYRADMQNSQDQWQLNLFLKAQTGTWSG
VWSEYTPVPNGGANGDTVLRMTNIYKGRQECVGDNEARTVSWRDLTLLHA
ADGGPLEPVVVAEHTMVPAMFRGGVGSMAADNVFSRSSVQAKEGGREGEE
VFEAETWIRQGNYRTRVSFVYESKGSTEAFEAHKVVVKKERLGMQGPTAE
EPELFGSSGRGIYDSSARMPGSWELSLHGGLSLAFPPLLPRGEKGAVIVD
WTAGYMRFQADRLFDLPDGTLGSLEVTQIGTEDSMKFKLEEKEAAEGLET
AGVVGGEVAGADEP*
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Synonyms
Publications