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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr14 | genome | chr14:600035..601526 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G01960.1 vs.
Match: EWM24633.1 (hypothetical protein Naga_100117g17 [Nannochloropsis gaditana]) HSP 1 Score: 477.6 bits (1228), Expect = 3.800e-131 Identity = 255/410 (62.20%), Postives = 294/410 (71.71%), Query Frame = 0
Query: 25 LVAVLQLIPIPVLSFLVQPPAAPTGRSVLTSSPPPSASVVSVFVPERKHVVVRQSIAPD-------GSD-----------------GMPPMPLGGESEYEYESEFPDQQAEIEYMADDELLAKYRADMQNSQDQWQLNLFLKAQTGTWSGVWSEYTPVPNGGANGDTVLRMTNIYKGRQECVGDNEARTVSWRDLTLLHAADGGPLEPVVVAEHTMVPAMFRGGVGSMAADNVFSRSSVQAKEGGREGEEVFEAETWIRQGNYRTRVSFVYESKGSTEAFEAHKVVVKKERLGMQGPTAEEPELFGSSGRGIYDSSARMPGSWELSLHGGLSLAFPPLLPRGEKGAVIVDWTAGYMRFQADRLFDLPDGTLGSLEVTQIGTEDSMKFKLEEKE---AAEGLETAGVVGGE 408
L+ +L L P+P FL + P S PS + R+HV+ R S P+ GS+ G+ PMP GGESEYEY+SE+ DQQAEIEY+ DDELLA+YRADMQNS DQWQLNLFLKAQTG WSGVWSEYTP PN G NG+TVLRMTNIYKGR EC GD +AR+V WR++TLLHAADGGPLEPVVV E M P FRG +G+MAADNVFS S V+ K EVFEAE WIRQG+YRTRV+FVY+S AF+A KV+VKKERLG +GPTAEEPELFGSSGRGIYD +AR+PGSW LSLHGGLSLAFPP LPRG++GAVIVDWTAG MRFQADR+FD PDGTLGSLEVTQIGT+DS+ F + + A+ +A GGE
Sbjct: 17 LLMLLMLSPVPTEGFLTRAPMTLRKIQHTAPSSAPSCGPAGDCI-RRQHVIARLSARPEDEGINNEGSNSGLGAGEHDKEPPNLEHGVSPMPTGGESEYEYQSEYTDQQAEIEYLGDDELLARYRADMQNSNDQWQLNLFLKAQTGIWSGVWSEYTPEPNSGPNGETVLRMTNIYKGRHECEGDYDARSVWWREVTLLHAADGGPLEPVVVGERRMEPTSFRGELGAMAADNVFSCSHVRFK----GATEVFEAEIWIRQGDYRTRVTFVYKSPDPAYAFQASKVLVKKERLGKEGPTAEEPELFGSSGRGIYDPNARVPGSWVLSLHGGLSLAFPPTLPRGQRGAVIVDWTAGTMRFQADRIFDRPDGTLGSLEVTQIGTQDSLTFTIPDDADAGVAKAAASADTNGGE 421
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G01960.1 ID=NO14G01960.1|Name=NO14G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1245bp ATGCCACAGTCTCCTGCGCAGGCAACAATGGTGCATCCATTGCAAAGCCA GGGCTCGGCCCTGAAAATTTTTCTGGTGGCAGTACTGCAGCTGATCCCCA TACCCGTGTTGAGCTTTTTGGTGCAGCCCCCTGCCGCGCCGACGGGCCGC TCTGTCTTGACTTCCTCTCCCCCTCCCTCTGCCTCCGTCGTCTCCGTGTT CGTACCCGAACGGAAGCACGTAGTGGTCCGCCAGAGCATTGCTCCCGACG GAAGTGACGGTATGCCACCCATGCCCTTGGGTGGGGAGTCCGAGTATGAG TATGAATCGGAGTTCCCTGACCAACAAGCTGAAATAGAATACATGGCCGA CGACGAGCTCCTTGCAAAATATCGCGCAGACATGCAAAACTCCCAAGACC AATGGCAGCTCAATCTCTTCCTCAAGGCCCAAACCGGTACCTGGTCGGGG GTCTGGAGCGAGTACACCCCTGTCCCAAACGGAGGCGCCAATGGCGACAC TGTCCTCCGCATGACGAACATCTATAAGGGCCGGCAAGAGTGCGTAGGGG ACAACGAGGCCCGCACTGTGTCGTGGCGAGATCTAACACTATTGCATGCC GCGGACGGCGGGCCCTTGGAGCCGGTGGTGGTGGCAGAGCACACGATGGT ACCGGCCATGTTCAGGGGAGGAGTCGGATCGATGGCAGCGGATAATGTCT TCTCTCGCTCCTCGGTCCAGGCGAAGGAGGGAGGGAGGGAGGGAGAGGAG GTCTTCGAAGCGGAGACTTGGATTCGGCAGGGGAACTATAGGACGCGGGT GTCGTTTGTGTACGAGAGTAAGGGGTCAACGGAGGCCTTCGAGGCGCACA AGGTGGTGGTGAAAAAGGAAAGGCTGGGCATGCAAGGACCGACGGCGGAG GAGCCTGAGTTGTTTGGTTCGAGTGGACGGGGCATCTACGATAGTAGTGC GCGGATGCCGGGGTCGTGGGAGTTGTCGCTGCATGGAGGCTTGAGCCTCG CATTCCCGCCCCTGCTGCCGCGGGGAGAGAAAGGGGCGGTGATTGTGGAC TGGACCGCGGGCTATATGAGGTTTCAAGCGGATCGACTCTTTGACTTACC TGATGGGACGTTGGGGTCGTTAGAGGTGACGCAAATCGGTACGGAGGACT CGATGAAATTCAAGCTTGAGGAGAAGGAGGCGGCCGAGGGTTTGGAGACA GCCGGAGTTGTAGGGGGAGAAGTGGCGGGAGCGGACGAACCGTGA back to topprotein sequence of NO14G01960.1 >NO14G01960.1-protein ID=NO14G01960.1-protein|Name=NO14G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp MPQSPAQATMVHPLQSQGSALKIFLVAVLQLIPIPVLSFLVQPPAAPTGR SVLTSSPPPSASVVSVFVPERKHVVVRQSIAPDGSDGMPPMPLGGESEYE YESEFPDQQAEIEYMADDELLAKYRADMQNSQDQWQLNLFLKAQTGTWSG VWSEYTPVPNGGANGDTVLRMTNIYKGRQECVGDNEARTVSWRDLTLLHA ADGGPLEPVVVAEHTMVPAMFRGGVGSMAADNVFSRSSVQAKEGGREGEE VFEAETWIRQGNYRTRVSFVYESKGSTEAFEAHKVVVKKERLGMQGPTAE EPELFGSSGRGIYDSSARMPGSWELSLHGGLSLAFPPLLPRGEKGAVIVD WTAGYMRFQADRLFDLPDGTLGSLEVTQIGTEDSMKFKLEEKEAAEGLET AGVVGGEVAGADEP* back to topmRNA from alignment at chr14:600035..601526+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G01960.1 ID=NO14G01960.1|Name=NO14G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1492bp|location=Sequence derived from alignment at chr14:600035..601526+ (Nannochloropsis oceanica) ATGCCACAGTCTCCTGCGCAGGCAACAATGGTGCATCCATTGCAAAGCCA
GGGCTCGGCCCTGAAAATTTTTCTGGTGGCAGTACTGCAGCTGATCCCCA
TACCCGTGTTGAGCTTTTTGGTGCAGCCCCCTGCCGCGCCGACGGGCCGC
TCTGTCTTGACTTCCTCTCCCCCTCCCTCTGCCTCCGTCGTCTCCGTGTT
CGTACCCGAACGGAAGCACGTAGTGGTCCGCCAGAGCATTGCTCCCGACG
GAAGTGACGGTATGCCACCCATGCCCTTGGGTGGGGAGTCCGAGTATGAG
TATGAATCGGAGTTCCCTGACCAACAAGCTGTACGTGAGGGAGGGAAAGG
GGGAGGGGACACGGGATGTTGAGGGGGGAGAGGGAAGATGAGGTAGCGGA
AGAACTGCACATGAGGGTATCAAGATGAATAGTCGGAGGGGAAAGGGGGA
AAGGTTGAACGTGAAAAGAGGCTTAAAGGGGGACCTCTCCCTTAACCTGA
ACCTGGCCACTTGATACTCGCTTGCACTTTCTCATGCATCTTCCCTCACA
TTCTTCACGTCCCCCGACAATCAATAGGAAATAGAATACATGGCCGACGA
CGAGCTCCTTGCAAAATATCGCGCAGACATGCAAAACTCCCAAGACCAAT
GGCAGCTCAATCTCTTCCTCAAGGCCCAAACCGGTACCTGGTCGGGGGTC
TGGAGCGAGTACACCCCTGTCCCAAACGGAGGCGCCAATGGCGACACTGT
CCTCCGCATGACGAACATCTATAAGGGCCGGCAAGAGTGCGTAGGGGACA
ACGAGGCCCGCACTGTGTCGTGGCGAGATCTAACACTATTGCATGCCGCG
GACGGCGGGCCCTTGGAGCCGGTGGTGGTGGCAGAGCACACGATGGTACC
GGCCATGTTCAGGGGAGGAGTCGGATCGATGGCAGCGGATAATGTCTTCT
CTCGCTCCTCGGTCCAGGCGAAGGAGGGAGGGAGGGAGGGAGAGGAGGTC
TTCGAAGCGGAGACTTGGATTCGGCAGGGGAACTATAGGACGCGGGTGTC
GTTTGTGTACGAGAGTAAGGGGTCAACGGAGGCCTTCGAGGCGCACAAGG
TGGTGGTGAAAAAGGAAAGGCTGGGCATGCAAGGACCGACGGCGGAGGAG
CCTGAGTTGTTTGGTTCGAGTGGACGGGGCATCTACGATAGTAGTGCGCG
GATGCCGGGGTCGTGGGAGTTGTCGCTGCATGGAGGCTTGAGCCTCGCAT
TCCCGCCCCTGCTGCCGCGGGGAGAGAAAGGGGCGGTGATTGTGGACTGG
ACCGCGGGCTATATGAGGTTTCAAGCGGATCGACTCTTTGACTTACCTGA
TGGGACGTTGGGGTCGTTAGAGGTGACGCAAATCGGTACGGAGGACTCGA
TGAAATTCAAGCTTGAGGAGAAGGAGGCGGCCGAGGGTTTGGAGACAGCC
GGAGTTGTAGGGGGAGAAGTGGCGGGAGCGGACGAACCGTGA back to topCoding sequence (CDS) from alignment at chr14:600035..601526+ >NO14G01960.1 ID=NO14G01960.1|Name=NO14G01960.1|organism=Nannochloropsis oceanica|type=CDS|length=1245bp|location=Sequence derived from alignment at chr14:600035..601526+ (Nannochloropsis oceanica) ATGCCACAGTCTCCTGCGCAGGCAACAATGGTGCATCCATTGCAAAGCCA GGGCTCGGCCCTGAAAATTTTTCTGGTGGCAGTACTGCAGCTGATCCCCA TACCCGTGTTGAGCTTTTTGGTGCAGCCCCCTGCCGCGCCGACGGGCCGC TCTGTCTTGACTTCCTCTCCCCCTCCCTCTGCCTCCGTCGTCTCCGTGTT CGTACCCGAACGGAAGCACGTAGTGGTCCGCCAGAGCATTGCTCCCGACG GAAGTGACGGTATGCCACCCATGCCCTTGGGTGGGGAGTCCGAGTATGAG TATGAATCGGAGTTCCCTGACCAACAAGCTGAAATAGAATACATGGCCGA CGACGAGCTCCTTGCAAAATATCGCGCAGACATGCAAAACTCCCAAGACC AATGGCAGCTCAATCTCTTCCTCAAGGCCCAAACCGGTACCTGGTCGGGG GTCTGGAGCGAGTACACCCCTGTCCCAAACGGAGGCGCCAATGGCGACAC TGTCCTCCGCATGACGAACATCTATAAGGGCCGGCAAGAGTGCGTAGGGG ACAACGAGGCCCGCACTGTGTCGTGGCGAGATCTAACACTATTGCATGCC GCGGACGGCGGGCCCTTGGAGCCGGTGGTGGTGGCAGAGCACACGATGGT ACCGGCCATGTTCAGGGGAGGAGTCGGATCGATGGCAGCGGATAATGTCT TCTCTCGCTCCTCGGTCCAGGCGAAGGAGGGAGGGAGGGAGGGAGAGGAG GTCTTCGAAGCGGAGACTTGGATTCGGCAGGGGAACTATAGGACGCGGGT GTCGTTTGTGTACGAGAGTAAGGGGTCAACGGAGGCCTTCGAGGCGCACA AGGTGGTGGTGAAAAAGGAAAGGCTGGGCATGCAAGGACCGACGGCGGAG GAGCCTGAGTTGTTTGGTTCGAGTGGACGGGGCATCTACGATAGTAGTGC GCGGATGCCGGGGTCGTGGGAGTTGTCGCTGCATGGAGGCTTGAGCCTCG CATTCCCGCCCCTGCTGCCGCGGGGAGAGAAAGGGGCGGTGATTGTGGAC TGGACCGCGGGCTATATGAGGTTTCAAGCGGATCGACTCTTTGACTTACC TGATGGGACGTTGGGGTCGTTAGAGGTGACGCAAATCGGTACGGAGGACT CGATGAAATTCAAGCTTGAGGAGAAGGAGGCGGCCGAGGGTTTGGAGACA GCCGGAGTTGTAGGGGGAGAAGTGGCGGGAGCGGACGAACCGTGA back to top
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