NO14G01960.1, NO14G01960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01960.1
Unique NameNO14G01960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1245
Alignment locationchr14:600035..601526 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:600035..601526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO14G01960.1 vs.
Match: EWM24633.1 (hypothetical protein Naga_100117g17 [Nannochloropsis gaditana])

HSP 1 Score: 477.6 bits (1228), Expect = 3.800e-131
Identity = 255/410 (62.20%), Postives = 294/410 (71.71%), Query Frame = 0
Query:   25 LVAVLQLIPIPVLSFLVQPPAAPTGRSVLTSSPPPSASVVSVFVPERKHVVVRQSIAPD-------GSD-----------------GMPPMPLGGESEYEYESEFPDQQAEIEYMADDELLAKYRADMQNSQDQWQLNLFLKAQTGTWSGVWSEYTPVPNGGANGDTVLRMTNIYKGRQECVGDNEARTVSWRDLTLLHAADGGPLEPVVVAEHTMVPAMFRGGVGSMAADNVFSRSSVQAKEGGREGEEVFEAETWIRQGNYRTRVSFVYESKGSTEAFEAHKVVVKKERLGMQGPTAEEPELFGSSGRGIYDSSARMPGSWELSLHGGLSLAFPPLLPRGEKGAVIVDWTAGYMRFQADRLFDLPDGTLGSLEVTQIGTEDSMKFKLEEKE---AAEGLETAGVVGGE 408
            L+ +L L P+P   FL + P           S  PS       +  R+HV+ R S  P+       GS+                 G+ PMP GGESEYEY+SE+ DQQAEIEY+ DDELLA+YRADMQNS DQWQLNLFLKAQTG WSGVWSEYTP PN G NG+TVLRMTNIYKGR EC GD +AR+V WR++TLLHAADGGPLEPVVV E  M P  FRG +G+MAADNVFS S V+ K       EVFEAE WIRQG+YRTRV+FVY+S     AF+A KV+VKKERLG +GPTAEEPELFGSSGRGIYD +AR+PGSW LSLHGGLSLAFPP LPRG++GAVIVDWTAG MRFQADR+FD PDGTLGSLEVTQIGT+DS+ F + +      A+   +A   GGE
Sbjct:   17 LLMLLMLSPVPTEGFLTRAPMTLRKIQHTAPSSAPSCGPAGDCI-RRQHVIARLSARPEDEGINNEGSNSGLGAGEHDKEPPNLEHGVSPMPTGGESEYEYQSEYTDQQAEIEYLGDDELLARYRADMQNSNDQWQLNLFLKAQTGIWSGVWSEYTPEPNSGPNGETVLRMTNIYKGRHECEGDYDARSVWWREVTLLHAADGGPLEPVVVGERRMEPTSFRGELGAMAADNVFSCSHVRFK----GATEVFEAEIWIRQGDYRTRVTFVYKSPDPAYAFQASKVLVKKERLGKEGPTAEEPELFGSSGRGIYDPNARVPGSWVLSLHGGLSLAFPPTLPRGQRGAVIVDWTAGTMRFQADRIFDRPDGTLGSLEVTQIGTQDSLTFTIPDDADAGVAKAAASADTNGGE 421          
The following BLAST results are available for this feature:
BLAST of NO14G01960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24633.13.800e-13162.20hypothetical protein Naga_100117g17 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01960NO14G01960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01960.1NO14G01960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01960.1.cds1NO14G01960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01960.1.cds2NO14G01960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01960.1 ID=NO14G01960.1|Name=NO14G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1245bp
ATGCCACAGTCTCCTGCGCAGGCAACAATGGTGCATCCATTGCAAAGCCA
GGGCTCGGCCCTGAAAATTTTTCTGGTGGCAGTACTGCAGCTGATCCCCA
TACCCGTGTTGAGCTTTTTGGTGCAGCCCCCTGCCGCGCCGACGGGCCGC
TCTGTCTTGACTTCCTCTCCCCCTCCCTCTGCCTCCGTCGTCTCCGTGTT
CGTACCCGAACGGAAGCACGTAGTGGTCCGCCAGAGCATTGCTCCCGACG
GAAGTGACGGTATGCCACCCATGCCCTTGGGTGGGGAGTCCGAGTATGAG
TATGAATCGGAGTTCCCTGACCAACAAGCTGAAATAGAATACATGGCCGA
CGACGAGCTCCTTGCAAAATATCGCGCAGACATGCAAAACTCCCAAGACC
AATGGCAGCTCAATCTCTTCCTCAAGGCCCAAACCGGTACCTGGTCGGGG
GTCTGGAGCGAGTACACCCCTGTCCCAAACGGAGGCGCCAATGGCGACAC
TGTCCTCCGCATGACGAACATCTATAAGGGCCGGCAAGAGTGCGTAGGGG
ACAACGAGGCCCGCACTGTGTCGTGGCGAGATCTAACACTATTGCATGCC
GCGGACGGCGGGCCCTTGGAGCCGGTGGTGGTGGCAGAGCACACGATGGT
ACCGGCCATGTTCAGGGGAGGAGTCGGATCGATGGCAGCGGATAATGTCT
TCTCTCGCTCCTCGGTCCAGGCGAAGGAGGGAGGGAGGGAGGGAGAGGAG
GTCTTCGAAGCGGAGACTTGGATTCGGCAGGGGAACTATAGGACGCGGGT
GTCGTTTGTGTACGAGAGTAAGGGGTCAACGGAGGCCTTCGAGGCGCACA
AGGTGGTGGTGAAAAAGGAAAGGCTGGGCATGCAAGGACCGACGGCGGAG
GAGCCTGAGTTGTTTGGTTCGAGTGGACGGGGCATCTACGATAGTAGTGC
GCGGATGCCGGGGTCGTGGGAGTTGTCGCTGCATGGAGGCTTGAGCCTCG
CATTCCCGCCCCTGCTGCCGCGGGGAGAGAAAGGGGCGGTGATTGTGGAC
TGGACCGCGGGCTATATGAGGTTTCAAGCGGATCGACTCTTTGACTTACC
TGATGGGACGTTGGGGTCGTTAGAGGTGACGCAAATCGGTACGGAGGACT
CGATGAAATTCAAGCTTGAGGAGAAGGAGGCGGCCGAGGGTTTGGAGACA
GCCGGAGTTGTAGGGGGAGAAGTGGCGGGAGCGGACGAACCGTGA
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protein sequence of NO14G01960.1

>NO14G01960.1-protein ID=NO14G01960.1-protein|Name=NO14G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MPQSPAQATMVHPLQSQGSALKIFLVAVLQLIPIPVLSFLVQPPAAPTGR
SVLTSSPPPSASVVSVFVPERKHVVVRQSIAPDGSDGMPPMPLGGESEYE
YESEFPDQQAEIEYMADDELLAKYRADMQNSQDQWQLNLFLKAQTGTWSG
VWSEYTPVPNGGANGDTVLRMTNIYKGRQECVGDNEARTVSWRDLTLLHA
ADGGPLEPVVVAEHTMVPAMFRGGVGSMAADNVFSRSSVQAKEGGREGEE
VFEAETWIRQGNYRTRVSFVYESKGSTEAFEAHKVVVKKERLGMQGPTAE
EPELFGSSGRGIYDSSARMPGSWELSLHGGLSLAFPPLLPRGEKGAVIVD
WTAGYMRFQADRLFDLPDGTLGSLEVTQIGTEDSMKFKLEEKEAAEGLET
AGVVGGEVAGADEP*
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mRNA from alignment at chr14:600035..601526+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01960.1 ID=NO14G01960.1|Name=NO14G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1492bp|location=Sequence derived from alignment at chr14:600035..601526+ (Nannochloropsis oceanica)
ATGCCACAGTCTCCTGCGCAGGCAACAATGGTGCATCCATTGCAAAGCCA GGGCTCGGCCCTGAAAATTTTTCTGGTGGCAGTACTGCAGCTGATCCCCA TACCCGTGTTGAGCTTTTTGGTGCAGCCCCCTGCCGCGCCGACGGGCCGC TCTGTCTTGACTTCCTCTCCCCCTCCCTCTGCCTCCGTCGTCTCCGTGTT CGTACCCGAACGGAAGCACGTAGTGGTCCGCCAGAGCATTGCTCCCGACG GAAGTGACGGTATGCCACCCATGCCCTTGGGTGGGGAGTCCGAGTATGAG TATGAATCGGAGTTCCCTGACCAACAAGCTGTACGTGAGGGAGGGAAAGG GGGAGGGGACACGGGATGTTGAGGGGGGAGAGGGAAGATGAGGTAGCGGA AGAACTGCACATGAGGGTATCAAGATGAATAGTCGGAGGGGAAAGGGGGA AAGGTTGAACGTGAAAAGAGGCTTAAAGGGGGACCTCTCCCTTAACCTGA ACCTGGCCACTTGATACTCGCTTGCACTTTCTCATGCATCTTCCCTCACA TTCTTCACGTCCCCCGACAATCAATAGGAAATAGAATACATGGCCGACGA CGAGCTCCTTGCAAAATATCGCGCAGACATGCAAAACTCCCAAGACCAAT GGCAGCTCAATCTCTTCCTCAAGGCCCAAACCGGTACCTGGTCGGGGGTC TGGAGCGAGTACACCCCTGTCCCAAACGGAGGCGCCAATGGCGACACTGT CCTCCGCATGACGAACATCTATAAGGGCCGGCAAGAGTGCGTAGGGGACA ACGAGGCCCGCACTGTGTCGTGGCGAGATCTAACACTATTGCATGCCGCG GACGGCGGGCCCTTGGAGCCGGTGGTGGTGGCAGAGCACACGATGGTACC GGCCATGTTCAGGGGAGGAGTCGGATCGATGGCAGCGGATAATGTCTTCT CTCGCTCCTCGGTCCAGGCGAAGGAGGGAGGGAGGGAGGGAGAGGAGGTC TTCGAAGCGGAGACTTGGATTCGGCAGGGGAACTATAGGACGCGGGTGTC GTTTGTGTACGAGAGTAAGGGGTCAACGGAGGCCTTCGAGGCGCACAAGG TGGTGGTGAAAAAGGAAAGGCTGGGCATGCAAGGACCGACGGCGGAGGAG CCTGAGTTGTTTGGTTCGAGTGGACGGGGCATCTACGATAGTAGTGCGCG GATGCCGGGGTCGTGGGAGTTGTCGCTGCATGGAGGCTTGAGCCTCGCAT TCCCGCCCCTGCTGCCGCGGGGAGAGAAAGGGGCGGTGATTGTGGACTGG ACCGCGGGCTATATGAGGTTTCAAGCGGATCGACTCTTTGACTTACCTGA TGGGACGTTGGGGTCGTTAGAGGTGACGCAAATCGGTACGGAGGACTCGA TGAAATTCAAGCTTGAGGAGAAGGAGGCGGCCGAGGGTTTGGAGACAGCC GGAGTTGTAGGGGGAGAAGTGGCGGGAGCGGACGAACCGTGA
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Coding sequence (CDS) from alignment at chr14:600035..601526+

>NO14G01960.1 ID=NO14G01960.1|Name=NO14G01960.1|organism=Nannochloropsis oceanica|type=CDS|length=1245bp|location=Sequence derived from alignment at chr14:600035..601526+ (Nannochloropsis oceanica)
ATGCCACAGTCTCCTGCGCAGGCAACAATGGTGCATCCATTGCAAAGCCA
GGGCTCGGCCCTGAAAATTTTTCTGGTGGCAGTACTGCAGCTGATCCCCA
TACCCGTGTTGAGCTTTTTGGTGCAGCCCCCTGCCGCGCCGACGGGCCGC
TCTGTCTTGACTTCCTCTCCCCCTCCCTCTGCCTCCGTCGTCTCCGTGTT
CGTACCCGAACGGAAGCACGTAGTGGTCCGCCAGAGCATTGCTCCCGACG
GAAGTGACGGTATGCCACCCATGCCCTTGGGTGGGGAGTCCGAGTATGAG
TATGAATCGGAGTTCCCTGACCAACAAGCTGAAATAGAATACATGGCCGA
CGACGAGCTCCTTGCAAAATATCGCGCAGACATGCAAAACTCCCAAGACC
AATGGCAGCTCAATCTCTTCCTCAAGGCCCAAACCGGTACCTGGTCGGGG
GTCTGGAGCGAGTACACCCCTGTCCCAAACGGAGGCGCCAATGGCGACAC
TGTCCTCCGCATGACGAACATCTATAAGGGCCGGCAAGAGTGCGTAGGGG
ACAACGAGGCCCGCACTGTGTCGTGGCGAGATCTAACACTATTGCATGCC
GCGGACGGCGGGCCCTTGGAGCCGGTGGTGGTGGCAGAGCACACGATGGT
ACCGGCCATGTTCAGGGGAGGAGTCGGATCGATGGCAGCGGATAATGTCT
TCTCTCGCTCCTCGGTCCAGGCGAAGGAGGGAGGGAGGGAGGGAGAGGAG
GTCTTCGAAGCGGAGACTTGGATTCGGCAGGGGAACTATAGGACGCGGGT
GTCGTTTGTGTACGAGAGTAAGGGGTCAACGGAGGCCTTCGAGGCGCACA
AGGTGGTGGTGAAAAAGGAAAGGCTGGGCATGCAAGGACCGACGGCGGAG
GAGCCTGAGTTGTTTGGTTCGAGTGGACGGGGCATCTACGATAGTAGTGC
GCGGATGCCGGGGTCGTGGGAGTTGTCGCTGCATGGAGGCTTGAGCCTCG
CATTCCCGCCCCTGCTGCCGCGGGGAGAGAAAGGGGCGGTGATTGTGGAC
TGGACCGCGGGCTATATGAGGTTTCAAGCGGATCGACTCTTTGACTTACC
TGATGGGACGTTGGGGTCGTTAGAGGTGACGCAAATCGGTACGGAGGACT
CGATGAAATTCAAGCTTGAGGAGAAGGAGGCGGCCGAGGGTTTGGAGACA
GCCGGAGTTGTAGGGGGAGAAGTGGCGGGAGCGGACGAACCGTGA
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Synonyms
Publications