NO14G01190, NO14G01190 (gene) Nannochloropsis oceanica

Overview
NameNO14G01190
Unique NameNO14G01190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1179
Alignment locationchr14:387405..388583 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:387405..388583 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO14G01190 vs. NCBI_GenBank
Match: EWM24699.1 (hypothetical protein Naga_100076g2 [Nannochloropsis gaditana])

HSP 1 Score: 214.9 bits (546), Expect = 4.400e-52
Identity = 158/412 (38.35%), Postives = 211/412 (51.21%), Query Frame = 0 
Query:    1 MLKRFLCR--RSIPPLATPIPDPPSLXXXXXXXT-INRSQTGYNDNEATAAV--ETKDDEAKLA--HKFVLERQRVRMRDELAKKRLKEASLLSQVDELSDEVRRLEKEVKNKDAILNECVERLHEQGVSLGRLQREKEETEEILDVAADTIRETRAQVKLLEE---WGPLANVLDCVRRLVGMGGREVDEKKEGTTAAEGTVVSAYRAFSMLLLFSL---------VFSIAIIYLVIPSRFLPFRPVHQYHCRVSSMTALMPGGPALETGEYLTNCR-HPWLFAAGLGGGSKSEIDGCATPHFLWMQDDGLLVLYQGWSPHHHGGPVWATHPVDVTTVAGYKPIKHLGGKGEDSMTGGGGQGRR---IVRALVDERKVLKLVRFMEGSGAEVVVFRRALKKLPASLVPWPF 390
            ML R   R  R  P  +    D PS+       +  +R  TG +D E  +A+  ET   +A++A   KF+LERQ  RMRDELA+K+   ASL +QV EL+DEVRR EKE K KD +L  C +RLHEQ V+L R +REK ET             TRA+++ LE    W P+   +D    LVG        +  G   A G V S     + +   SL         VF+ A + +V      P        CR S++  L PGGP+L   EY+++CR   WL  +   GG+++ + GC   HFLW+Q DG L+LY+G SP  H GPVWAT  ++     G +       +G+     GG Q  R     RA VD +K LK+VR +EGS  E  VF  A K+LP  L PWPF
Sbjct:    1 MLARLFKRRHRGSPASSLASDDHPSMNEPDLDVSRTSRRYTGSHDKEGASAIEKETFAAQAEIASTEKFLLERQGARMRDELARKKFTVASLSTQVQELTDEVRRWEKETKCKDTMLEGCAQRLHEQEVALSRARREKTETXXXXXXXXXXXXXTRARLEQLEGRGLWEPVGKAMD--GGLVG--------EARGAPTATGEVPSKRTGMARIYALSLACVAILAMGVFAGASLDVVSLEGITPLGTT----CRRSALLVLRPGGPSLAMREYISSCRTSQWLTTS---GGTETSLGGCQNRHFLWLQGDGNLILYRGTSPSRHAGPVWATQRIEGKRALGLEGESLGNARGKKGRRDGGRQEERPRYSYRAFVDGKKRLKVVRRLEGSADEKTVFSMAAKRLPKVLFPWPF 395
The following BLAST results are available for this feature:
BLAST of NO14G01190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24699.14.400e-5238.35hypothetical protein Naga_100076g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR024ngnoR024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002314NSK002314Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G01190.1NO14G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G01190.1NO14G01190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G01190 ID=NO14G01190|Name=NO14G01190|organism=Nannochloropsis oceanica|type=gene|length=1179bp
ATGCTCAAACGCTTCCTCTGCCGCCGGTCCATCCCCCCGCTCGCTACCCC
CATTCCTGACCCTCCCTCCCTTTCACAAGATCAAGATCAAGACACCATCA
ATCGTTCCCAAACCGGCTACAATGACAACGAGGCAACTGCGGCTGTTGAG
ACGAAAGACGACGAGGCCAAGCTCGCGCACAAATTTGTCCTAGAAAGACA
AAGGGTCCGGATGCGAGACGAGCTGGCCAAGAAACGATTGAAAGAGGCAA
GTTTACTGTCGCAAGTGGACGAATTGAGTGATGAGGTCCGACGTTTGGAA
AAGGAGGTGAAGAACAAGGACGCCATATTGAACGAGTGTGTGGAAAGATT
GCATGAGCAGGGAGTAAGCTTGGGGCGCTTGCAACGAGAGAAGGAAGAAA
CGGAAGAAATTTTAGATGTAGCCGCTGACACCATCCGAGAGACACGAGCA
CAGGTGAAGCTGCTGGAAGAATGGGGGCCTCTGGCCAATGTGTTGGATTG
TGTACGCCGTTTGGTAGGGATGGGCGGCAGGGAAGTGGACGAGAAGAAGG
AAGGAACGACGGCGGCTGAGGGGACTGTGGTGTCTGCCTACAGGGCGTTT
TCAATGTTACTACTCTTCTCGCTCGTCTTTTCCATCGCCATCATTTACCT
AGTGATTCCAAGTCGCTTTCTCCCGTTCCGTCCTGTTCATCAATACCATT
GTCGAGTAAGCAGCATGACCGCCTTGATGCCCGGTGGTCCTGCACTGGAA
ACTGGTGAATACCTGACCAACTGTCGTCACCCCTGGCTCTTCGCTGCTGG
ACTTGGAGGTGGAAGTAAAAGTGAAATAGACGGGTGCGCAACCCCTCATT
TCTTGTGGATGCAGGACGATGGGCTGTTGGTTTTGTATCAAGGCTGGTCG
CCGCACCACCACGGAGGACCTGTATGGGCGACTCACCCCGTGGATGTGAC
GACAGTGGCAGGGTATAAACCTATAAAGCACTTGGGAGGAAAAGGTGAGG
ATAGCATGACTGGAGGAGGAGGACAAGGCAGAAGGATTGTGAGGGCGTTG
GTCGACGAGCGGAAAGTCTTGAAACTGGTGAGGTTTATGGAAGGTAGTGG
GGCGGAGGTGGTGGTCTTTCGCAGGGCTTTGAAAAAGCTGCCCGCAAGCT
TGGTGCCTTGGCCGTTTGAAGAATCATGA
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protein sequence of NO14G01190.1

>NO14G01190.1-protein ID=NO14G01190.1-protein|Name=NO14G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MLKRFLCRRSIPPLATPIPDPPSLSQDQDQDTINRSQTGYNDNEATAAVE
TKDDEAKLAHKFVLERQRVRMRDELAKKRLKEASLLSQVDELSDEVRRLE
KEVKNKDAILNECVERLHEQGVSLGRLQREKEETEEILDVAADTIRETRA
QVKLLEEWGPLANVLDCVRRLVGMGGREVDEKKEGTTAAEGTVVSAYRAF
SMLLLFSLVFSIAIIYLVIPSRFLPFRPVHQYHCRVSSMTALMPGGPALE
TGEYLTNCRHPWLFAAGLGGGSKSEIDGCATPHFLWMQDDGLLVLYQGWS
PHHHGGPVWATHPVDVTTVAGYKPIKHLGGKGEDSMTGGGGQGRRIVRAL
VDERKVLKLVRFMEGSGAEVVVFRRALKKLPASLVPWPFEES*
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Synonyms
Publications