NO14G01190.1, NO14G01190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01190.1
Unique NameNO14G01190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1179
Alignment locationchr14:387405..388583 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:387405..388583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO14G01190.1 vs.
Match: EWM24699.1 (hypothetical protein Naga_100076g2 [Nannochloropsis gaditana])

HSP 1 Score: 236.9 bits (603), Expect = 1.100e-58
Identity = 165/412 (40.05%), Postives = 225/412 (54.61%), Query Frame = 0 
Query:    1 MLKRFLCRR--SIPPLATPIPDPPSLSQ-DQDQDTINRSQTGYNDNEATAAVE--TKDDEAKLA--HKFVLERQRVRMRDELAKKRLKEASLLSQVDELSDEVRRLEKEVKNKDAILNECVERLHEQGVSLGRLQREKEETEEILDVAADTIRETRAQVKLLEE---WGPLANVLDCVRRLVGMGGREVDEKKEGTTAAEGTVVSAYRAFSMLLLFSL---------VFSIAIIYLVIPSRFLPFRPVHQYHCRVSSMTALMPGGPALETGEYLTNCR-HPWLFAAGLGGGSKSEIDGCATPHFLWMQDDGLLVLYQGWSPHHHGGPVWATHPVDVTTVAGYKPIKHLGGKGEDSMTGGGGQGRR---IVRALVDERKVLKLVRFMEGSGAEVVVFRRALKKLPASLVPWPF 390
            ML R   RR    P  +    D PS+++ D D    +R  TG +D E  +A+E  T   +A++A   KF+LERQ  RMRDELA+K+   ASL +QV EL+DEVRR EKE K KD +L  C +RLHEQ V+L R +REK ET+E+L+  A+++RETRA+++ LE    W P+   +D    LVG        +  G   A G V S     + +   SL         VF+ A + +V      P        CR S++  L PGGP+L   EY+++CR   WL  +   GG+++ + GC   HFLW+Q DG L+LY+G SP  H GPVWAT  ++     G +       +G+     GG Q  R     RA VD +K LK+VR +EGS  E  VF  A K+LP  L PWPF
Sbjct:    1 MLARLFKRRHRGSPASSLASDDHPSMNEPDLDVSRTSRRYTGSHDKEGASAIEKETFAAQAEIASTEKFLLERQGARMRDELARKKFTVASLSTQVQELTDEVRRWEKETKCKDTMLEGCAQRLHEQEVALSRARREKTETDEMLEATAESLRETRARLEQLEGRGLWEPVGKAMD--GGLVG--------EARGAPTATGEVPSKRTGMARIYALSLACVAILAMGVFAGASLDVVSLEGITPLGTT----CRRSALLVLRPGGPSLAMREYISSCRTSQWLTTS---GGTETSLGGCQNRHFLWLQGDGNLILYRGTSPSRHAGPVWATQRIEGKRALGLEGESLGNARGKKGRRDGGRQEERPRYSYRAFVDGKKRLKVVRRLEGSADEKTVFSMAAKRLPKVLFPWPF 395
The following BLAST results are available for this feature:
BLAST of NO14G01190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24699.11.100e-5840.05hypothetical protein Naga_100076g2 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01190NO14G01190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01190.1NO14G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01190.1.cds1NO14G01190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01190.1 ID=NO14G01190.1|Name=NO14G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1179bp
ATGCTCAAACGCTTCCTCTGCCGCCGGTCCATCCCCCCGCTCGCTACCCC
CATTCCTGACCCTCCCTCCCTTTCACAAGATCAAGATCAAGACACCATCA
ATCGTTCCCAAACCGGCTACAATGACAACGAGGCAACTGCGGCTGTTGAG
ACGAAAGACGACGAGGCCAAGCTCGCGCACAAATTTGTCCTAGAAAGACA
AAGGGTCCGGATGCGAGACGAGCTGGCCAAGAAACGATTGAAAGAGGCAA
GTTTACTGTCGCAAGTGGACGAATTGAGTGATGAGGTCCGACGTTTGGAA
AAGGAGGTGAAGAACAAGGACGCCATATTGAACGAGTGTGTGGAAAGATT
GCATGAGCAGGGAGTAAGCTTGGGGCGCTTGCAACGAGAGAAGGAAGAAA
CGGAAGAAATTTTAGATGTAGCCGCTGACACCATCCGAGAGACACGAGCA
CAGGTGAAGCTGCTGGAAGAATGGGGGCCTCTGGCCAATGTGTTGGATTG
TGTACGCCGTTTGGTAGGGATGGGCGGCAGGGAAGTGGACGAGAAGAAGG
AAGGAACGACGGCGGCTGAGGGGACTGTGGTGTCTGCCTACAGGGCGTTT
TCAATGTTACTACTCTTCTCGCTCGTCTTTTCCATCGCCATCATTTACCT
AGTGATTCCAAGTCGCTTTCTCCCGTTCCGTCCTGTTCATCAATACCATT
GTCGAGTAAGCAGCATGACCGCCTTGATGCCCGGTGGTCCTGCACTGGAA
ACTGGTGAATACCTGACCAACTGTCGTCACCCCTGGCTCTTCGCTGCTGG
ACTTGGAGGTGGAAGTAAAAGTGAAATAGACGGGTGCGCAACCCCTCATT
TCTTGTGGATGCAGGACGATGGGCTGTTGGTTTTGTATCAAGGCTGGTCG
CCGCACCACCACGGAGGACCTGTATGGGCGACTCACCCCGTGGATGTGAC
GACAGTGGCAGGGTATAAACCTATAAAGCACTTGGGAGGAAAAGGTGAGG
ATAGCATGACTGGAGGAGGAGGACAAGGCAGAAGGATTGTGAGGGCGTTG
GTCGACGAGCGGAAAGTCTTGAAACTGGTGAGGTTTATGGAAGGTAGTGG
GGCGGAGGTGGTGGTCTTTCGCAGGGCTTTGAAAAAGCTGCCCGCAAGCT
TGGTGCCTTGGCCGTTTGAAGAATCATGA
back to top

protein sequence of NO14G01190.1

>NO14G01190.1-protein ID=NO14G01190.1-protein|Name=NO14G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MLKRFLCRRSIPPLATPIPDPPSLSQDQDQDTINRSQTGYNDNEATAAVE
TKDDEAKLAHKFVLERQRVRMRDELAKKRLKEASLLSQVDELSDEVRRLE
KEVKNKDAILNECVERLHEQGVSLGRLQREKEETEEILDVAADTIRETRA
QVKLLEEWGPLANVLDCVRRLVGMGGREVDEKKEGTTAAEGTVVSAYRAF
SMLLLFSLVFSIAIIYLVIPSRFLPFRPVHQYHCRVSSMTALMPGGPALE
TGEYLTNCRHPWLFAAGLGGGSKSEIDGCATPHFLWMQDDGLLVLYQGWS
PHHHGGPVWATHPVDVTTVAGYKPIKHLGGKGEDSMTGGGGQGRRIVRAL
VDERKVLKLVRFMEGSGAEVVVFRRALKKLPASLVPWPFEES*
back to top

mRNA from alignment at chr14:387405..388583-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01190.1 ID=NO14G01190.1|Name=NO14G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1179bp|location=Sequence derived from alignment at chr14:387405..388583- (Nannochloropsis oceanica)
ATGCTCAAACGCTTCCTCTGCCGCCGGTCCATCCCCCCGCTCGCTACCCC
CATTCCTGACCCTCCCTCCCTTTCACAAGATCAAGATCAAGACACCATCA
ATCGTTCCCAAACCGGCTACAATGACAACGAGGCAACTGCGGCTGTTGAG
ACGAAAGACGACGAGGCCAAGCTCGCGCACAAATTTGTCCTAGAAAGACA
AAGGGTCCGGATGCGAGACGAGCTGGCCAAGAAACGATTGAAAGAGGCAA
GTTTACTGTCGCAAGTGGACGAATTGAGTGATGAGGTCCGACGTTTGGAA
AAGGAGGTGAAGAACAAGGACGCCATATTGAACGAGTGTGTGGAAAGATT
GCATGAGCAGGGAGTAAGCTTGGGGCGCTTGCAACGAGAGAAGGAAGAAA
CGGAAGAAATTTTAGATGTAGCCGCTGACACCATCCGAGAGACACGAGCA
CAGGTGAAGCTGCTGGAAGAATGGGGGCCTCTGGCCAATGTGTTGGATTG
TGTACGCCGTTTGGTAGGGATGGGCGGCAGGGAAGTGGACGAGAAGAAGG
AAGGAACGACGGCGGCTGAGGGGACTGTGGTGTCTGCCTACAGGGCGTTT
TCAATGTTACTACTCTTCTCGCTCGTCTTTTCCATCGCCATCATTTACCT
AGTGATTCCAAGTCGCTTTCTCCCGTTCCGTCCTGTTCATCAATACCATT
GTCGAGTAAGCAGCATGACCGCCTTGATGCCCGGTGGTCCTGCACTGGAA
ACTGGTGAATACCTGACCAACTGTCGTCACCCCTGGCTCTTCGCTGCTGG
ACTTGGAGGTGGAAGTAAAAGTGAAATAGACGGGTGCGCAACCCCTCATT
TCTTGTGGATGCAGGACGATGGGCTGTTGGTTTTGTATCAAGGCTGGTCG
CCGCACCACCACGGAGGACCTGTATGGGCGACTCACCCCGTGGATGTGAC
GACAGTGGCAGGGTATAAACCTATAAAGCACTTGGGAGGAAAAGGTGAGG
ATAGCATGACTGGAGGAGGAGGACAAGGCAGAAGGATTGTGAGGGCGTTG
GTCGACGAGCGGAAAGTCTTGAAACTGGTGAGGTTTATGGAAGGTAGTGG
GGCGGAGGTGGTGGTCTTTCGCAGGGCTTTGAAAAAGCTGCCCGCAAGCT
TGGTGCCTTGGCCGTTTGAAGAATCATGA
back to top

Coding sequence (CDS) from alignment at chr14:387405..388583-

>NO14G01190.1 ID=NO14G01190.1|Name=NO14G01190.1|organism=Nannochloropsis oceanica|type=CDS|length=1179bp|location=Sequence derived from alignment at chr14:387405..388583- (Nannochloropsis oceanica)
ATGCTCAAACGCTTCCTCTGCCGCCGGTCCATCCCCCCGCTCGCTACCCC
CATTCCTGACCCTCCCTCCCTTTCACAAGATCAAGATCAAGACACCATCA
ATCGTTCCCAAACCGGCTACAATGACAACGAGGCAACTGCGGCTGTTGAG
ACGAAAGACGACGAGGCCAAGCTCGCGCACAAATTTGTCCTAGAAAGACA
AAGGGTCCGGATGCGAGACGAGCTGGCCAAGAAACGATTGAAAGAGGCAA
GTTTACTGTCGCAAGTGGACGAATTGAGTGATGAGGTCCGACGTTTGGAA
AAGGAGGTGAAGAACAAGGACGCCATATTGAACGAGTGTGTGGAAAGATT
GCATGAGCAGGGAGTAAGCTTGGGGCGCTTGCAACGAGAGAAGGAAGAAA
CGGAAGAAATTTTAGATGTAGCCGCTGACACCATCCGAGAGACACGAGCA
CAGGTGAAGCTGCTGGAAGAATGGGGGCCTCTGGCCAATGTGTTGGATTG
TGTACGCCGTTTGGTAGGGATGGGCGGCAGGGAAGTGGACGAGAAGAAGG
AAGGAACGACGGCGGCTGAGGGGACTGTGGTGTCTGCCTACAGGGCGTTT
TCAATGTTACTACTCTTCTCGCTCGTCTTTTCCATCGCCATCATTTACCT
AGTGATTCCAAGTCGCTTTCTCCCGTTCCGTCCTGTTCATCAATACCATT
GTCGAGTAAGCAGCATGACCGCCTTGATGCCCGGTGGTCCTGCACTGGAA
ACTGGTGAATACCTGACCAACTGTCGTCACCCCTGGCTCTTCGCTGCTGG
ACTTGGAGGTGGAAGTAAAAGTGAAATAGACGGGTGCGCAACCCCTCATT
TCTTGTGGATGCAGGACGATGGGCTGTTGGTTTTGTATCAAGGCTGGTCG
CCGCACCACCACGGAGGACCTGTATGGGCGACTCACCCCGTGGATGTGAC
GACAGTGGCAGGGTATAAACCTATAAAGCACTTGGGAGGAAAAGGTGAGG
ATAGCATGACTGGAGGAGGAGGACAAGGCAGAAGGATTGTGAGGGCGTTG
GTCGACGAGCGGAAAGTCTTGAAACTGGTGAGGTTTATGGAAGGTAGTGG
GGCGGAGGTGGTGGTCTTTCGCAGGGCTTTGAAAAAGCTGCCCGCAAGCT
TGGTGCCTTGGCCGTTTGAAGAATCATGA
back to top
Synonyms
Publications