NO14G00960, NO14G00960 (gene) Nannochloropsis oceanica

Overview
NameNO14G00960
Unique NameNO14G00960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2253
Alignment locationchr14:325435..327687 -

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Properties
Property NameValue
DescriptionL-serine ammonia-lyase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:325435..327687 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036052Trypto_synt_PLP_dependent
IPR001926TrpB-like_PLP-dep
Vocabulary: Molecular Function
TermDefinition
GO:0030170pyridoxal phosphate binding
GO:0016829lyase activity
Vocabulary: Biological Process
TermDefinition
GO:0006520cellular amino acid metabolic process
Homology
BLAST of NO14G00960 vs. NCBI_GenBank
Match: EWM24737.1 (l-serine ammonia-lyase [Nannochloropsis gaditana])

HSP 1 Score: 511.1 bits (1315), Expect = 3.200e-141
Identity = 301/441 (68.25%), Postives = 332/441 (75.28%), Query Frame = 0
Query:    1 MVLLTGFLKMMGTASVALT-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPGGEAMRIKSPLIYSFSMSSLENSPPIYLKLDVLQPSGSFKDRGMATLCASLQQQGARRLISSSGGNAGLSAALCGRILNLPVRVIVPTTTKPLMLEKIRAQGAEVEVFGNNWNEADARARWLVEKGGREGGEDGEGGQAAYIPPYDHPLLWQGHSSLVDELVESG-----IEKPAAIVASVGGGGLLCGIFEGLSRYEKGEDGREGWADVGVVGAETEGAASFAAGMAAGKVVRLEGISSLATSLGALEVTPQALAXXXXXXXXXXXXXXXXXXXXXXERVILSEVVSDKDAVHACRRFLQDHRLLVEPACGAALALVYSKRGRERLKALSDAKGGKPVVVVVCGGSGITPEILAEMERSLGLAA 430
            MVL TGFLKM+GTASVALT                                                        PG EAMR+KSPLIYS  MSSLEN+PPIYLKLD LQPSGSFKDRGMATLC++LQ+QGARRL+SSSGGNAGLSAALCGRIL +PV+VIVP+TTKPLMLEKIRAQGA+VEVFG NWNEADARARW+VE+GGREGG +      AYIPPYDHPLLW+GHS+LVDELVE G      E PAAIVASVGGGGLLCGI+EGLSRYE    GR GW DVGVVG ETEGAASFAAG+AAG+VVRL  I ++ATSLGALEVTP+AL         XXXXXXXXXXXXXX R+ LSEVV+D +AV ACR FL+DHRLLVEPACGAALALVYS R R+RLKA S AKGG+PVV+VVCGGSGITPEIL EMER LG+ +
Sbjct:    1 MVLCTGFLKMIGTASVALTGSTTGLSSRGLTTLSYVPPSASPTIMADITTNPSTSSTPAAPSPGIAATGTGARRSPGKEAMRVKSPLIYSHPMSSLENAPPIYLKLDALQPSGSFKDRGMATLCSTLQRQGARRLVSSSGGNAGLSAALCGRILGMPVQVIVPSTTKPLMLEKIRAQGAKVEVFGKNWNEADARARWVVEEGGREGGPEA----VAYIPPYDHPLLWEGHSTLVDELVEGGREGGMEEAPAAIVASVGGGGLLCGIYEGLSRYE----GRAGWEDVGVVGVETEGAASFAAGLAAGEVVRLTEIQTVATSLGALEVTPRAL----EYARSXXXXXXXXXXXXXXPRLTLSEVVTDAEAVQACRAFLRDHRLLVEPACGAALALVYSPRLRKRLKAWSAAKGGRPVVIVVCGGSGITPEILVEMERGLGVGS 429          
BLAST of NO14G00960 vs. NCBI_GenBank
Match: XP_002176259.1 (l-serine ammonia-lyase [Phaeodactylum tricornutum CCAP 1055/1] >EEC42753.1 l-serine ammonia-lyase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 286.6 bits (732), Expect = 1.300e-73
Identity = 165/342 (48.25%), Postives = 214/342 (62.57%), Query Frame = 0
Query:   77 KSPLIYSFSMSSLENSPPIYLKLDVLQPSGSFKDRGMATLCASLQQQGARRLISSSGGNAGLSAALCGRILNLPVRVIVPTTTKPLMLEKIRAQGAEVEVFGNNWNEADARARWLVEKGGREGGEDGEGGQAAYIPPYDHPLLWQGHSSLVDELVESGIEKPAAIVASVGGGGLLCGIFEGLSRYEKGEDGREGWADVGVVGAETEGAASFAAGMAAGKVVRLEGISSLATSLGALEVTPQALAXXXXXXXXXXXXXXXXXXXXXXERVILSEVVSDKDAVHACRRFLQDHRLLVEPACGAALALVYSKRGRERLKALSDAKGGKPVVVVVCGGSGITPEIL 419
            K+PLI S  +S +     +Y+KLD LQ SGSFKDRGM  LC++LQ QG R++ISSSGGNAGL+ A  G+ L + V VIVPTTTKP+++EK+++ GA+V V G NWN AD+ AR  V +              AY+ PYD+PLLW GHS+LVDE+++       AI+ SVGGGGLLCGI EGL+        R G     V+ AET+GAASF      GK+VRL+ I S+ATSLGALEV P  L                          +L  + +D +AV AC RF QDHR+LVEPACGAALA+ Y++R R   + LS    G P+V+ VCGGSG++ ++L
Sbjct:   25 KTPLIKSIPISKIVGK-DVYIKLDALQASGSFKDRGMGHLCSTLQAQGVRKVISSSGGNAGLAVATVGQKLGIEVSVIVPTTTKPMVIEKLQSLGAQVTVHGENWNAADSLARQKVAESSM---------NTAYVSPYDNPLLWTGHSTLVDEVLDQLERNLGAIIVSVGGGGLLCGILEGLA--------RRGCPPTTVIAAETQGAASFGKARQQGKIVRLKAIDSIATSLGALEVAPAVLKLSKEHEDAGGR--------------VLDALCTDAEAVDACLRFAQDHRILVEPACGAALAVAYTERLRN--ECLSQITDG-PIVLEVCGGSGVSVDLL 331          
BLAST of NO14G00960 vs. NCBI_GenBank
Match: XP_002289376.1 (serine/threonine deaminase, partial [Thalassiosira pseudonana CCMP1335] >EED92913.1 serine/threonine deaminase, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 273.5 bits (698), Expect = 1.100e-69
Identity = 177/374 (47.33%), Postives = 225/374 (60.16%), Query Frame = 0
Query:   76 IKSPLIYSFSMSSLENSPPIYLKLDVLQPSGSFKDRGMATLCASL------------------QQQGA---RRLISSSGGNAGLSAALCGR-ILNLPVRVIVPTTTKPLMLEKIRAQGAEVEVFGNNWNEADARARWLVEKGGREGGEDGEGGQAAYIPPYDHPLLWQGHSSLVDELVESGIE-----KPAAIVASVGGGGLLCGIFEGLSR-YEKGEDGREG-WADVGVVGAETEGAASFAAGMAAGKVVRLEGISSLATSLGALEVTPQALAXXXXXXXXXXXXXXXXXXXXXXERVILSEVVSDKDAVHACRRFLQDHRLLVEPACGAALALVYSKRGRERLKALSDAKG--GKPVVVVVCGGSGITPEIL 419
            + +PLI+S  +S+L     +YLKLD+LQPSGSFKDRGMA LC +L                  Q  G+    +LISSSGGNAGL+     R I ++ V VIVP TTKPL++EK+R+ GA+V V G NWN AD  AR LV++   + G+    G A Y+ PYD+PLLW GHS++VDE++   I+     K  AI+ASVGGGGLLCGI EGL R Y  G   R    +   VV  ETEGAASFAA      +VRLEGI+S+ATSLGALEVTP  +                          +LS V +D +AV+AC +F   HR+LVEPACGAALA +YS R R +L     +KG     +VV VCGGSG+  ++L
Sbjct:    2 LTTPLIHSIPLSNLCAPHQVYLKLDLLQPSGSFKDRGMAHLCMTLKKVHTANRKQKQQLSPGGQDDGSGNTMKLISSSGGNAGLAVTTVARNIPDMEVSVIVPETTKPLVIEKLRSLGADVTVHGANWNLADDLARKLVKEHRDQDGDSALSGGAEYVSPYDNPLLWTGHSTVVDEIITQLIDTKHDVKVGAILASVGGGGLLCGILEGLERNYFGGSSVRSNVISGTKVVACETEGAASFAASKKGTTMVRLEGINSVATSLGALEVTPAVIHRSRRHQERGQIGGSGED--------VLSYVCTDAEAVNACVQFSSHHRMLVEPACGAALAPLYSDRLRTKLLEELKSKGEESSAIVVEVCGGSGVNLDLL 367          
BLAST of NO14G00960 vs. NCBI_GenBank
Match: GAX11437.1 (L-serine dehydratase [Fistulifera solaris])

HSP 1 Score: 266.9 bits (681), Expect = 1.100e-67
Identity = 165/346 (47.69%), Postives = 208/346 (60.12%), Query Frame = 0
Query:   77 KSPLIYSFSMSSLENSPPIYLKLDVLQPSGSFKDRGMATLCASLQQQGARRLISSSGGNAGLSAALCGRILNLPVRVIVPTTTKPLMLEKIRAQGAEVEVFGNNWNEADARARWLVEKGGREGGEDGEGGQAAYIPPYDHPLLWQGHSSLVDELVES--GIEKPAAIVASVGGGGLLCGIFEGLSRYEKGEDGREGWADVGVVGAETEGAASFAAGMAAGKVVRLEGISSLATSLGALEVTPQALAXXXXXXXXXXXXXXXXXXXXXXERVILSEVVSDKDAVHACRRFLQDHRLLVEPACGAALALVYSKRGRERLKALSDAKGGKPVVVVVCGGSGITPEILAE 421
            ++PL+ S  +SSL     +YLK+D LQ SGSFKDRGMA LC  L++ G +RL+SSSGGNAGL+ A  G  L +PV VIVP TTKP+++ K+++ GA V V G NWN AD   R  V +            + AYI PYD+PLLW GHS+LVDE+ E    +E PAA++ SVGGGGLLCG  EG+         R GW    VV AETEGAASF      G + RL  I S+ATSLGAL+VTP AL                          + S   +D +AV AC    QDHR+LVEPACGAALA +YS+R R     L++   G P+VV VCGGSG+  ++L +
Sbjct:   19 ETPLLRSVPLSSL-CGRDVYLKMDGLQASGSFKDRGMAHLCLELKETGVQRLVSSSGGNAGLAVATVGARLGIPVDVIVPQTTKPMVIAKLQSLGASVTVHGENWNAADEYTREKVTQSTE---------KTAYISPYDNPLLWTGHSTLVDEICEQLHNVE-PAALIVSVGGGGLLCGALEGIQ--------RNGWKSTTVVAAETEGAASFGKAWTEG-IERLSSIDSIATSLGALQVTPVALQRSKDHGS------------------VTSIRCTDAEAVDACWNMAQDHRILVEPACGAALATLYSERLRN--SWLANLPEG-PIVVEVCGGSGVNMDLLTQ 323          
BLAST of NO14G00960 vs. NCBI_GenBank
Match: WP_028634174.1 (serine dehydratase [Pseudomonas parafulva])

HSP 1 Score: 259.6 bits (662), Expect = 1.700e-65
Identity = 161/341 (47.21%), Postives = 203/341 (59.53%), Query Frame = 0
Query:   74 MRIKSPLIYSFSMSSLENSPPIYLKLDVLQPSGSFKDRGMATLCASLQQQGARRLISSSGGNAGLSAALCGRILNLPVRVIVPTTTKPLMLEKIRAQGAEVEVFGNNWNEADARARWLVEKGGREGGEDGEGGQAAYIPPYDHPLLWQGHSSLVDELVESGIEKPAAIVASVGGGGLLCGIFEGLSRYEKGEDGREGWADVGVVGAETEGAASFAAGMAAGKVVRLEGISSLATSLGALEVTPQALAXXXXXXXXXXXXXXXXXXXXXXERVILSEVVSDKDAVHACRRFLQDHRLLVEPACGAALALVYSKRGRERLKALSDAKGGKPVVVVVCGGSGIT 415
            + I +PLI S  +S    S  ++LKLD LQPSGSFK RG+   C     +GARR +SSSGGNAGL+ A  GR L +PV V+VP TT     E +R + AEV V G+ W+EA+A A+ LV            G  AA+I P+D PLLW GH+SLVDE+ ++G+ KP A+V SVGGGGLL G+ EGL         R GW DV VV  ETEGAAS  A M AG  V L+ ++S+ATSLGA  V  QALA                      +  ++S++VSD  AV AC++FL DHRLLVEPACGAALAL YS +     +          V++VVCGG+  T
Sbjct:    3 LHIPTPLIESPPLSQACGS-NVWLKLDALQPSGSFKLRGVGHACEVHHARGARRFVSSSGGNAGLAVAYAGRKLGVPVTVVVPETTTERAKELLRQEDAEVIVHGSAWHEANALAQTLV------------GADAAFIHPFDDPLLWAGHASLVDEVAQTGL-KPDAVVLSVGGGGLLSGVVEGLQ--------RNGWVDVPVVAVETEGAASLHAAMHAGHSVELQQLTSIATSLGAKRVADQALA-------------------CTRQHPVVSQLVSDHQAVQACQQFLHDHRLLVEPACGAALALAYSTQALAAYRT---------VLIVVCGGATAT 293          
BLAST of NO14G00960 vs. NCBI_GenBank
Match: EJK59741.1 (hypothetical protein THAOC_20000 [Thalassiosira oceanica])

HSP 1 Score: 258.5 bits (659), Expect = 3.800e-65
Identity = 173/376 (46.01%), Postives = 216/376 (57.45%), Query Frame = 0
Query:   78 SPLIYSFSMSSLENSPPIYLKLDVLQPSGSFKDRGMATLCASLQQ-------------------QGARRLISSSGGNAGLSAALCGR-ILNLPVRVIVPTTTKPLMLEKIRAQGAEVEVFGNNWNEADARARWLVEKGGREGGEDGEGGQAAYIPPYDHPLLWQGHSSLVDELVE-----SGIEKPAAIVASVGGGGLLCGIFEGLSR-YEKGEDGREGWADVGVVGAETEGAASFAAGMAAGKV-------VRLEGISSLATSLGALEVTPQALAXXXXXXXXXXXXXXXXXXXXXXERVILSEVVSDKDAVHACRRFLQDHRLLVEPACGAALALVYSKRGRERLKALSDAKG--GKPVVVVVCGGSGITPEIL 419
            +PL+ S  +S L     +YLKLD+LQ SGSFKDRGMA LCA+ Q+                    G  ++ISSSGGNAGL+     R I  + V V+VP TTK L+++K+R+ GA+V V G NWN AD  AR  V++  +EG        A Y+ PYD+PLLW GHS++VDE+++     S   K  AI+ASVGGGGLLCG+ EG+ R Y   E          VV  ETEGA+SFAA   A  V       VRLE I S+ATSLGALEVTP  +                          +LS V SD +AV AC RF  DHR+LVEPACGAALA +YS R R +L  L + KG  G  +VV VCGGSG+  E+L
Sbjct:   44 TPLVESLPLSKLCAPHRVYLKLDLLQQSGSFKDRGMAHLCATTQKVYTANRQREADGVNGSSDADGRIKVISSSGGNAGLAVTTVARKIPQMDVSVVVPETTKQLVIDKLRSLGADVTVHGANWNSADELARRWVDE-AKEG--------AVYVSPYDNPLLWTGHSTIVDEVLDQLSETSNDAKVGAILASVGGGGLLCGVLEGIERNYFSDESKARMIRGSKVVACETEGASSFAASFNANPVGNNDLTMVRLESIDSVATSLGALEVTPAVVQRAHRHMERGREQDGHGED-------VLSYVCSDAEAVAACARFASDHRMLVEPACGAALAPIYSDRLRVQL--LEELKGSVGSAIVVEVCGGSGVNLELL 401          
BLAST of NO14G00960 vs. NCBI_GenBank
Match: WP_060483344.1 (serine dehydratase [Pseudomonas sp. NBRC 111119])

HSP 1 Score: 258.5 bits (659), Expect = 3.800e-65
Identity = 160/341 (46.92%), Postives = 202/341 (59.24%), Query Frame = 0
Query:   74 MRIKSPLIYSFSMSSLENSPPIYLKLDVLQPSGSFKDRGMATLCASLQQQGARRLISSSGGNAGLSAALCGRILNLPVRVIVPTTTKPLMLEKIRAQGAEVEVFGNNWNEADARARWLVEKGGREGGEDGEGGQAAYIPPYDHPLLWQGHSSLVDELVESGIEKPAAIVASVGGGGLLCGIFEGLSRYEKGEDGREGWADVGVVGAETEGAASFAAGMAAGKVVRLEGISSLATSLGALEVTPQALAXXXXXXXXXXXXXXXXXXXXXXERVILSEVVSDKDAVHACRRFLQDHRLLVEPACGAALALVYSKRGRERLKALSDAKGGKPVVVVVCGGSGIT 415
            + I +PLI S  +S    S  ++LKLD LQPSGSFK RG+   C     +GARR +SSSGGNAGL+ A  GR L +PV V+VP TT     E +R + AEV V G+ W+EA+A A+ LV               AA+I P+D PLLW GH+SLVDE+ ++G+ K  A+V SVGGGGLL G+ EGL         R GW DV VV  ETEGAAS  A M AG  V L+ ++S+ATSLGA  V  QALA                      +  ++S++VSD  AVHAC++FL DHRLLVEPACGAALAL YS +     +          V++VVCGG+  T
Sbjct:    3 LHIPTPLIESRPLSQACGS-NVWLKLDALQPSGSFKLRGVGHACEVHHARGARRFVSSSGGNAGLAVAYAGRKLGVPVTVVVPETTTERAKELLRQEDAEVIVHGSAWHEANALAQTLV------------SADAAFIHPFDDPLLWAGHASLVDEVAQTGL-KSDAVVLSVGGGGLLSGVVEGLQ--------RNGWVDVPVVAVETEGAASLHAAMRAGHSVELQQLTSIATSLGAKRVADQALA-------------------CTRQHPVVSQLVSDNQAVHACQQFLHDHRLLVEPACGAALALAYSTQALAAYRT---------VLIVVCGGATAT 293          
BLAST of NO14G00960 vs. NCBI_GenBank
Match: WP_054914512.1 (MULTISPECIES: serine dehydratase [Pseudomonas] >KTC24913.1 serine dehydratase [Pseudomonas putida] >OUM27333.1 serine dehydratase [Pseudomonas sp. 1239] >PPS61905.1 serine dehydratase [Pseudomonas sp. BRM28])

HSP 1 Score: 256.1 bits (653), Expect = 1.900e-64
Identity = 162/352 (46.02%), Postives = 208/352 (59.09%), Query Frame = 0
Query:   73 AMRIKSPLIYSFSMSSLENSPPIYLKLDVLQPSGSFKDRGMATLCASLQQQGARRLISSSGGNAGLSAALCGRILNLPVRVIVPTTTKPLMLEKIRAQGAEVEVFGNNWNEADARARWLVEKGGREGGEDGEGGQAAYIPPYDHPLLWQGHSSLVDELVESGIEKPAAIVASVGGGGLLCGIFEGLSRYEKGEDGREGWADVGVVGAETEGAASFAAGMAAGKVVRLEGISSLATSLGALEVTPQALAXXXXXXXXXXXXXXXXXXXXXXERVILSEVVSDKDAVHACRRFLQDHRLLVEPACGAALALVYSKRGRERLKALSDAKGGKPVVVVVCGGSGITPEILAEMERS 425
            ++ +++PL+ S  + SL +   ++LKLD LQP GSFK RG+   C +  +QG RR +SSSGGNAG++ A  GR L LPV V+VP TT     + IR + AEV V G+ W+EA+A A+ L+               AA+I P+D PLLWQGH+SL+DE+V SG  KP AIV SVGGGGLL G+ EGL+R +        WADV V   ET+GAAS AA MA+     L  ++S+ATSLGA +V  QA                        +R I S VV+D  A+ AC RFL DHR+LVEPACGAALAL Y+    E LKA       + V+VVVCGG   T E + E   S
Sbjct:    2 SLHLETPLVPSRPL-SLASGQDVWLKLDALQPCGSFKLRGVGLACQAYARQGKRRFVSSSGGNAGIAVAYAGRCLGLPVTVVVPQTTTERARQLIRQEDAEVIVHGSAWHEANAYAQSLLT------------DDAAFIHPFDDPLLWQGHASLIDEVVISGF-KPDAIVLSVGGGGLLAGVCEGLARND--------WADVPVFAVETDGAASLAAAMASKAPTALPAVTSVATSLGAKQVCQQAF-------------------ELSQQRPIHSHVVTDAQALDACERFLLDHRILVEPACGAALALAYAP--SEALKAY------QSVLVVVCGGVTATHEQIREWRAS 304          
BLAST of NO14G00960 vs. NCBI_GenBank
Match: OGO91916.1 (serine dehydratase [Coxiella sp. RIFCSPHIGHO2_12_FULL_44_14])

HSP 1 Score: 256.1 bits (653), Expect = 1.900e-64
Identity = 153/353 (43.34%), Postives = 211/353 (59.77%), Query Frame = 0
Query:   74 MRIKSPLIYSFSMSSLENSPPIYLKLDVLQPSGSFKDRGMATLCASLQQQGARRLISSSGGNAGLSAALCGRILNLPVRVIVPTTTKPLMLEKIRAQGAEVEVFGNNWNEADARARWLVEKGGREGGEDGEGGQAAYIPPYDHPLLWQGHSSLVDELVESGIEKPAAIVASVGGGGLLCGIFEGLSRYEKGEDGREGWADVGVVGAETEGAASFAAGMAAGKVVRLEGISSLATSLGALEVTPQALAXXXXXXXXXXXXXXXXXXXXXXERVILSEVVSDKDAVHACRRFLQDHRLLVEPACGAALALVYSKRGRERLKALSDAKGGKPVVVVVCGGSGITPEILAEMERSLG 427
            + +++P ++  ++ S +   P++LK++  QP GSFK RG+  LC      G R L+SSSGGNAG S A  G+ L + V V VPT T  + ++ IRA+GAEV++ G+ W+EA+  A+  V+K         EGG   ++PP+DHP +W GHS+LVDELVE   EKP AIV SVGGGGL CGI +GL R+        GW DV +   ETEGAASF A M AGK+V L GI ++AT+LG + V  +                         +  I   VVSDK AV ACRRF+ DHR+LVEPACGAAL+++Y     +R  +L+ A     ++V+VCGG GI+  +L +  +  G
Sbjct:    6 LHVRTP-VFESTILSAQLGKPVFLKMECYQPVGSFKIRGIGQLCQEWVASGKRHLVSSSGGNAGYSVAYAGKRLGVQVTVFVPTNTASVYIDHIRAEGAEVKIEGDIWDEANKAAQKYVKK--------VEGG---FVPPFDHPTIWAGHSTLVDELVEQ-CEKPGAIVVSVGGGGLSCGILQGLYRH--------GWPDVPIFAVETEGAASFYAAMQAGKLVTLPGIHTVATTLGVVRVCTELF-------------------NWAQKHPITPLVVSDKAAVLACRRFVDDHRVLVEPACGAALSVIY-----DRAPSLTTAHS---LLVIVCGGIGISLALLEKYLQQCG 310          
BLAST of NO14G00960 vs. NCBI_GenBank
Match: WP_043862786.1 (MULTISPECIES: serine dehydratase [Pseudomonas] >KIU48785.1 serine dehydratase [Pseudomonas putida] >OOW01076.1 serine dehydratase [Pseudomonas sp. MF6396])

HSP 1 Score: 255.4 bits (651), Expect = 3.200e-64
Identity = 162/352 (46.02%), Postives = 208/352 (59.09%), Query Frame = 0
Query:   73 AMRIKSPLIYSFSMSSLENSPPIYLKLDVLQPSGSFKDRGMATLCASLQQQGARRLISSSGGNAGLSAALCGRILNLPVRVIVPTTTKPLMLEKIRAQGAEVEVFGNNWNEADARARWLVEKGGREGGEDGEGGQAAYIPPYDHPLLWQGHSSLVDELVESGIEKPAAIVASVGGGGLLCGIFEGLSRYEKGEDGREGWADVGVVGAETEGAASFAAGMAAGKVVRLEGISSLATSLGALEVTPQALAXXXXXXXXXXXXXXXXXXXXXXERVILSEVVSDKDAVHACRRFLQDHRLLVEPACGAALALVYSKRGRERLKALSDAKGGKPVVVVVCGGSGITPEILAEMERS 425
            ++ +++PL+ S  + SL +   ++LKLD LQP GSFK RG+   C +  +QG RR +SSSGGNAG++ A  GR L LPV V+VP TT     + IR + AEV V G+ W+EA+A A+ L+               AA+I P+D PLLWQGH+SL+DE+V SG  KP AIV SVGGGGLL G+ EGL+R +        WADV V   ET+GAAS AA MA+     L  ++S+ATSLGA +V  QA                        +R I S VV+D  A+ AC RFL DHR+LVEPACGAALAL Y+    E LKA       + V+VVVCGG   T E + E   S
Sbjct:    2 SLHLETPLVPSRPL-SLASGQDVWLKLDALQPCGSFKLRGVGLACQAYARQGKRRFVSSSGGNAGIAVAYAGRCLGLPVTVVVPQTTTERARQLIRQEDAEVIVHGSAWHEANAYAQSLLT------------DDAAFIHPFDDPLLWQGHASLIDEVVISGF-KPDAIVLSVGGGGLLAGVCEGLARND--------WADVPVFAVETDGAASLAAAMASKAPTALPAVTSVATSLGAKQVCQQAF-------------------ELSQQRPIHSHVVTDAQALDACERFLLDHRILVEPACGAALALAYAP--SEVLKAY------QSVLVVVCGGVTATHEQIREWRAS 304          
The following BLAST results are available for this feature:
BLAST of NO14G00960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24737.13.200e-14168.25l-serine ammonia-lyase [Nannochloropsis gaditana][more]
XP_002176259.11.300e-7348.25l-serine ammonia-lyase [Phaeodactylum tricornutum ... [more]
XP_002289376.11.100e-6947.33serine/threonine deaminase, partial [Thalassiosira... [more]
GAX11437.11.100e-6747.69L-serine dehydratase [Fistulifera solaris][more]
WP_028634174.11.700e-6547.21serine dehydratase [Pseudomonas parafulva][more]
EJK59741.13.800e-6546.01hypothetical protein THAOC_20000 [Thalassiosira oc... [more]
WP_060483344.13.800e-6546.92serine dehydratase [Pseudomonas sp. NBRC 111119][more]
WP_054914512.11.900e-6446.02MULTISPECIES: serine dehydratase [Pseudomonas] >KT... [more]
OGO91916.11.900e-6443.34serine dehydratase [Coxiella sp. RIFCSPHIGHO2_12_F... [more]
WP_043862786.13.200e-6446.02MULTISPECIES: serine dehydratase [Pseudomonas] >KI... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL139nonsL139Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR024ngnoR024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002259NSK002259Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00960.1NO14G00960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528499gene_5664Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100272g2gene5747Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00960.1NO14G00960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00960 ID=NO14G00960|Name=NO14G00960|organism=Nannochloropsis oceanica|type=gene|length=2253bp
TCAGAGATCAGGAAGTCTCTGTCTTTGCGTGCGGGGTGTCGATGCGGAGG
AATGATTAAGAATGCGAGAGCAGGCTGGCTTCAAGGTCAACCACACACAG
AACAAAAGGAAGAAAGGATATACATGTGCCTTTCCCGCCATCATTTGCGA
TACCCGCGACGCTGTCCGTGCCAGAGTTGTGAGCCGCCACGACGCTGGGG
AGTAAAGTGGCTGCGGTACGCTTCGTGGATTGTCGGGGTTGATGCCTTGG
TGTCCTAGCAAATGTGCAGGAAAGGAAGAGCGAGAAGAAGTACTGCACTC
GCGTGATGATAGAGGGAGTCGTCGGTCGTCGCTGTCGCCGGTGGAACCCA
AAACCACGCGTTTTGAGGCGGCAGCATATGGACAATACCTTTCAGGACAA
AACCATCGTGTGAGTGATCACCTACTTGCCTAGTTCAATCGGCTTCGGGG
TTTGCATACTTTTGTTTTATTTATTGAACCTACCCCGTCCGACCTCCCCA
CCCCATTTCTTCAGCCGCACTAACTCTCACGCCCGGATACTGAAACTCAA
TGCGTACACAAACACAGGGGTGGGTCTGTGCCAGTGGATCCCTTCGTCAT
TCCTTTATTGTCACAAGACAGCAGGAGCAATATCATTATCAGGAGCACCA
GCCATGGTCCTTCTTACCGGGTTCCTCAAAATGATGGGTACCGCCTCAGT
TGCCCTGACGGTAGGCACCACCAGTCAAACCGCTAGTCGAGGGCTTGCAT
CCTCTTTTTCGTCCACCACTATCACCCCTGCCCCCGCTGCTGTCACTGCA
GACCCGACTATCAACGCCGTGACCGCGACGGCAGTGGCGGCGGCCATTAC
GGGAGGACCAGGCGGGGAGGCCATGCGGATCAAGTCACCTTTGATCTATT
CCTTCTCTATGTCTAGCCTCGAAAATgtacgtcccttatacacattgagg
catccacacatcatctgtccatcctgtatttcgtcttgtgatttctccat
cccgatctctttccaacgcactcacttccccctccctccctccctccctc
cccccctccctccctcgcagTCTCCCCCCATATACCTAAAGCTTGACGTC
TTACAACCTTCCGGCTCCTTTAAAGACCGAGGTATGGCTACGCTCTGCGC
CTCTCTGCAGCAGCAAGGTGCGCGTCGCCTTATTTCCTCCTCGGGGGGGA
ACGCTGGCTTGAGCGCCGCATTGTGTGGGCGTATCTTGAATCTCCCAGTG
AGGGTGATTGTCCCCACGACGACCAAGCCTTTAATGCTGGAGAAAATTAG
GGCTCAAGGCGCGGAAGTGGAGGTATTTGGGAACAACTGGAATGAGGCCG
ATGCCCGGGCACGGTGGCTGGTGGAGAAGGGAGGGAGGGAGGGGGGGGAA
GACGGGGAGGGAGGGCAGGCGGCGTACATTCCGCCGTACGACCACCCTCT
CTTGTGGCAGGGACACAGTTCTCTGGTGGATGAGTTAGTGGAAAGTGGAA
TCGAGAAACCGGCCGCCATCGTGGCGAGTGTGGGGGGAGGCGGGTTGTTG
TGTGGCATTTTTGAAGGACTCAGCAGGTATGAGAAGGGGGAGGACGGGAG
GGAGGGCTGGGCGGACGTAGGGGTGGTAGGAGCAGAGACGGAGGGCGCTG
CGTCGTTTGCGGCCGGGATGGCGGCAGGGAAGGTGGTGAGGTTGGAAGGG
ATTTCGTCTCTGGCTACCTCCCTGGGGGCCTTGGAGGTGACTCCGCAGGC
ACTCGCATACGCGTTGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GAGAAGGAGGGGTGGGGAGTGGGGAGAGGGTAATCTTGAGCGAGGTGGTT
AGTGATAAGGACGCGGTACATGCTTGTAGGAGATTTCTGCAAGACCATCG
GCTTTTGGTTGAGCCGGCGTGTGGCGCGGCGCTGGCGTTGGTGTATTCGA
AGAGGGGCAGGGAGAGACTGAAGGCCCTGTCAGACGCCAAGGGGGGAAAG
CCGGTGGTGGTGGTGGTGTGTGGGGGCAGTGGGATCACGCCAGAAATACT
GGCAGAGATGGAGAGGAGCCTTGGGTTGGCGGCATGAGGAGGGAGGGAGG
GAGGGAGAGAGGGAGGGAGGGAAGGGATATACGATGTATAGAGAAGGTCA
CAGAGATATTAGGAAGTGCGAAGAAATGAAGCTTATAGAAGAAAGTGAGA
AAGCCAAGGCATAGAAACATATATAATTTAATGAAATAGATCTATCCAAA
TGA
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protein sequence of NO14G00960.1

>NO14G00960.1-protein ID=NO14G00960.1-protein|Name=NO14G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MVLLTGFLKMMGTASVALTVGTTSQTASRGLASSFSSTTITPAPAAVTAD
PTINAVTATAVAAAITGGPGGEAMRIKSPLIYSFSMSSLENSPPIYLKLD
VLQPSGSFKDRGMATLCASLQQQGARRLISSSGGNAGLSAALCGRILNLP
VRVIVPTTTKPLMLEKIRAQGAEVEVFGNNWNEADARARWLVEKGGREGG
EDGEGGQAAYIPPYDHPLLWQGHSSLVDELVESGIEKPAAIVASVGGGGL
LCGIFEGLSRYEKGEDGREGWADVGVVGAETEGAASFAAGMAAGKVVRLE
GISSLATSLGALEVTPQALAYALKGGREGGREGGREGGVGSGERVILSEV
VSDKDAVHACRRFLQDHRLLVEPACGAALALVYSKRGRERLKALSDAKGG
KPVVVVVCGGSGITPEILAEMERSLGLAA*
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Synonyms
Publications