NO14G00860, NO14G00860 (gene) Nannochloropsis oceanica

Overview
NameNO14G00860
Unique NameNO14G00860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1050
Alignment locationchr14:299220..300269 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:299220..300269 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
Homology
The following BLAST results are available for this feature:
BLAST of NO14G00860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL139nonsL139Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR024ngnoR024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002273NSK002273Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00860.1NO14G00860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589858gene_5655Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00860.1NO14G00860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00860 ID=NO14G00860|Name=NO14G00860|organism=Nannochloropsis oceanica|type=gene|length=1050bp
ATGAAAGAGTTGTCGGTCCGACGATTACCGTACTTGGGGGTGGTGCATGG
AGGGAGGGAGGCAGGTAGGAAGGTAAGCGTGAAGAGCTTGCATCATTTCA
AACCGCCCCCGTCCCCGGAGCAGGCGGTGGTGTGGTTGAACAGAACATTA
GAGgtaaggagagagaggggggggaagggaggggggagggagagagggag
ggatcggcgagtactctttggcatgcccatcgatttgtttacaaagtaaa
ttaaaactgtccatttccctccccccctcccttcctccccccttttctta
gATCCACGGCCATGTCCTAGAAGAGGACAAAAAGGATCGCGCTTTTGTTC
TCAGTGAAAAGAAGCTTCAGgtatggtccatcccttcttttcttattctt
tccctccccttctccacatcttttacctccccccttccttttccccaccc
tcctcctcttctcttactgtagATCGAGCAAAAACAAGAGTACAGCAAAG
CCTTGCTGGCTGACCGAGAAAGAGAAGCCACCGAAAAAGCTAAAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCCGAAACGAAGAAGCAGGAAGACGA
GACACGACGGGCGAGAAAGAAGTTGGCTTTGGGGAATGAACCCAAGGAAT
GGAAAGCGGAGGATGATGAGATCTGCTGCAAAATTGCCGCGCGGATGCCA
CAGAGGGGGGGAGGGAAGGAGGGAGGAAAGAAGGTTCAAAGGACATTCCG
GGCGACTGATGTGCTAGAAAAGGTGTTCGATTGGTTGGACGTCGAAGGGT
TGGAGGAGCTGCGAGGGGCAAAGGTAGTATTGGCAGGAGGGAGAGGAAGG
GGAGTAAGGATGGCATACGTCTATCCAGAGGACAAGCATAAGACGCTTGG
GGAGGCGGGCATTGAGGGACAGGTTTCGTTGCTTGTGGAGAGTGGAGGAG
GAGGAGCGAAGTAAGGGAGATGGAAAAAGATAACTCAGTAAAATAAAGCA
CGATGATAAATTTGGTAAATAAGACAAAAAAAATATTCGAAAAATAGAAA
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protein sequence of NO14G00860.1

>NO14G00860.1-protein ID=NO14G00860.1-protein|Name=NO14G00860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MKELSVRRLPYLGVVHGGREAGRKVSVKSLHHFKPPPSPEQAVVWLNRTL
EIHGHVLEEDKKDRAFVLSEKKLQIEQKQEYSKALLADREREATEKAKAA
AAAAAAAAAETKKQEDETRRARKKLALGNEPKEWKAEDDEICCKIAARMP
QRGGGKEGGKKVQRTFRATDVLEKVFDWLDVEGLEELRGAKVVLAGGRGR
GVRMAYVYPEDKHKTLGEAGIEGQVSLLVESGGGGAK*
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Synonyms
Publications