NO14G00860.1, NO14G00860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00860.1
Unique NameNO14G00860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length800
Alignment locationchr14:299220..300269 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:299220..300269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO14G00860.1 vs.
Match: CBJ25455.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 79.3 bits (194), Expect = 1.700e-11
Identity = 67/212 (31.60%), Postives = 102/212 (48.11%), Query Frame = 0
Query:   26 SVKSLHHFKPPPSPEQAVVWLNRTLEIHGHVLEEDKKDRAFVLSEKKLQIEQKQEYSKALLADREREATEKAKAAAAA-------AAAAAAETKKQEDETRRARKKLALGNEPKEWKAEDDEICCKIAARMPQRGGGKEGGKKVQRTFRATDVLEKVFDWLDVEGLEELRGAKVVLAGGRGRGVRMAYVYPEDKHKTLGEAGIEGQVSLLVE 231
            S  ++HH  PPPS  Q V W+ R LE+   +LE +  ++  +  E  +  E+ + YSK+L  D  RE  E+ + A  A        A  A E K +ED  RR +K   LG EP E   +  E     AA +  R      G +++R F  +D + KV DW DV+G+ +L   ++          + ++ +P D   T+ EAG+  Q  L VE
Sbjct:   10 STVAMHHCNPPPSASQMVSWMARVLELKKSLLEVELAEQQRLKDEDTIYTERVEGYSKSLKDDALREVREREEEAERARLAEEQRVAQEALEAKLREDVERREKKAAELGQEPPESAVKGAEAT---AATLMLR---LADGSRIRRRFLRSDPMGKVLDWADVQGV-DLDAQRL-----SSTMPKASFSHPGDSGMTIEEAGLGRQALLFVE 209          
The following BLAST results are available for this feature:
BLAST of NO14G00860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ25455.11.700e-1131.60conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00860NO14G00860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00860.1NO14G00860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00860.1.cds1NO14G00860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00860.1.cds2NO14G00860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00860.1.cds3NO14G00860.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00860.1 ID=NO14G00860.1|Name=NO14G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=800bp
ATGAAAGAGTTGTCGGTCCGACGATTACCGTACTTGGGGGTGGTGCATGG
AGGGAGGGAGGCAGGTAGGAAGGTAAGCGTGAAGAGCTTGCATCATTTCA
AACCGCCCCCGTCCCCGGAGCAGGCGGTGGTGTGGTTGAACAGAACATTA
GAGATCCACGGCCATGTCCTAGAAGAGGACAAAAAGGATCGCGCTTTTGT
TCTCAGTGAAAAGAAGCTTCAGATCGAGCAAAAACAAGAGTACAGCAAAG
CCTTGCTGGCTGACCGAGAAAGAGAAGCCACCGAAAAAGCTAAAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCCGAAACGAAGAAGCAGGAAGACGA
GACACGACGGGCGAGAAAGAAGTTGGCTTTGGGGAATGAACCCAAGGAAT
GGAAAGCGGAGGATGATGAGATCTGCTGCAAAATTGCCGCGCGGATGCCA
CAGAGGGGGGGAGGGAAGGAGGGAGGAAAGAAGGTTCAAAGGACATTCCG
GGCGACTGATGTGCTAGAAAAGGTGTTCGATTGGTTGGACGTCGAAGGGT
TGGAGGAGCTGCGAGGGGCAAAGGTAGTATTGGCAGGAGGGAGAGGAAGG
GGAGTAAGGATGGCATACGTCTATCCAGAGGACAAGCATAAGACGCTTGG
GGAGGCGGGCATTGAGGGACAGGTTTCGTTGCTTGTGGAGAGTGGAGGAG
GAGGAGCGAAGTAAGGGAGATGGAAAAAGATAACTCAGTAAAATAAAGCA
CGATGATAAATTTGGTAAATAAGACAAAAAAAATATTCGAAAAATAGAAA
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protein sequence of NO14G00860.1

>NO14G00860.1-protein ID=NO14G00860.1-protein|Name=NO14G00860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MKELSVRRLPYLGVVHGGREAGRKVSVKSLHHFKPPPSPEQAVVWLNRTL
EIHGHVLEEDKKDRAFVLSEKKLQIEQKQEYSKALLADREREATEKAKAA
AAAAAAAAAETKKQEDETRRARKKLALGNEPKEWKAEDDEICCKIAARMP
QRGGGKEGGKKVQRTFRATDVLEKVFDWLDVEGLEELRGAKVVLAGGRGR
GVRMAYVYPEDKHKTLGEAGIEGQVSLLVESGGGGAK*
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mRNA from alignment at chr14:299220..300269+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00860.1 ID=NO14G00860.1|Name=NO14G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1050bp|location=Sequence derived from alignment at chr14:299220..300269+ (Nannochloropsis oceanica)
ATGAAAGAGTTGTCGGTCCGACGATTACCGTACTTGGGGGTGGTGCATGG AGGGAGGGAGGCAGGTAGGAAGGTAAGCGTGAAGAGCTTGCATCATTTCA AACCGCCCCCGTCCCCGGAGCAGGCGGTGGTGTGGTTGAACAGAACATTA GAGGTAAGGAGAGAGAGGGGGGGGAAGGGAGGGGGGAGGGAGAGAGGGAG GGATCGGCGAGTACTCTTTGGCATGCCCATCGATTTGTTTACAAAGTAAA TTAAAACTGTCCATTTCCCTCCCCCCCTCCCTTCCTCCCCCCTTTTCTTA GATCCACGGCCATGTCCTAGAAGAGGACAAAAAGGATCGCGCTTTTGTTC TCAGTGAAAAGAAGCTTCAGGTATGGTCCATCCCTTCTTTTCTTATTCTT TCCCTCCCCTTCTCCACATCTTTTACCTCCCCCCTTCCTTTTCCCCACCC TCCTCCTCTTCTCTTACTGTAGATCGAGCAAAAACAAGAGTACAGCAAAG CCTTGCTGGCTGACCGAGAAAGAGAAGCCACCGAAAAAGCTAAAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGCCGAAACGAAGAAGCAGGAAGACGA GACACGACGGGCGAGAAAGAAGTTGGCTTTGGGGAATGAACCCAAGGAAT GGAAAGCGGAGGATGATGAGATCTGCTGCAAAATTGCCGCGCGGATGCCA CAGAGGGGGGGAGGGAAGGAGGGAGGAAAGAAGGTTCAAAGGACATTCCG GGCGACTGATGTGCTAGAAAAGGTGTTCGATTGGTTGGACGTCGAAGGGT TGGAGGAGCTGCGAGGGGCAAAGGTAGTATTGGCAGGAGGGAGAGGAAGG GGAGTAAGGATGGCATACGTCTATCCAGAGGACAAGCATAAGACGCTTGG GGAGGCGGGCATTGAGGGACAGGTTTCGTTGCTTGTGGAGAGTGGAGGAG GAGGAGCGAAGTAAGGGAGATGGAAAAAGATAACTCAGTAAAATAAAGCA CGATGATAAATTTGGTAAATAAGACAAAAAAAATATTCGAAAAATAGAAA
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Coding sequence (CDS) from alignment at chr14:299220..300269+

>NO14G00860.1 ID=NO14G00860.1|Name=NO14G00860.1|organism=Nannochloropsis oceanica|type=CDS|length=714bp|location=Sequence derived from alignment at chr14:299220..300269+ (Nannochloropsis oceanica)
ATGAAAGAGTTGTCGGTCCGACGATTACCGTACTTGGGGGTGGTGCATGG
AGGGAGGGAGGCAGGTAGGAAGGTAAGCGTGAAGAGCTTGCATCATTTCA
AACCGCCCCCGTCCCCGGAGCAGGCGGTGGTGTGGTTGAACAGAACATTA
GAGATCCACGGCCATGTCCTAGAAGAGGACAAAAAGGATCGCGCTTTTGT
TCTCAGTGAAAAGAAGCTTCAGATCGAGCAAAAACAAGAGTACAGCAAAG
CCTTGCTGGCTGACCGAGAAAGAGAAGCCACCGAAAAAGCTAAAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCCGAAACGAAGAAGCAGGAAGACGA
GACACGACGGGCGAGAAAGAAGTTGGCTTTGGGGAATGAACCCAAGGAAT
GGAAAGCGGAGGATGATGAGATCTGCTGCAAAATTGCCGCGCGGATGCCA
CAGAGGGGGGGAGGGAAGGAGGGAGGAAAGAAGGTTCAAAGGACATTCCG
GGCGACTGATGTGCTAGAAAAGGTGTTCGATTGGTTGGACGTCGAAGGGT
TGGAGGAGCTGCGAGGGGCAAAGGTAGTATTGGCAGGAGGGAGAGGAAGG
GGAGTAAGGATGGCATACGTCTATCCAGAGGACAAGCATAAGACGCTTGG
GGAGGCGGGCATTGAGGGACAGGTTTCGTTGCTTGTGGAGAGTGGAGGAG
GAGGAGCGAAGTAA
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Synonyms
Publications