NO14G00760, NO14G00760 (gene) Nannochloropsis oceanica

Overview
NameNO14G00760
Unique NameNO14G00760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2911
Alignment locationchr14:268197..271107 -

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Properties
Property NameValue
DescriptionMyb family transcription factor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:268197..271107 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0016787hydrolase activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeodomain-like
IPR017930Myb_dom
IPR001005SANT/Myb
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006629lipid metabolic process
Homology
[Close]
BLAST of NO14G00760 vs. NCBI_GenBank
Match: EWM24723.1 (myb family transcription factor [Nannochloropsis gaditana])

HSP 1 Score: 265.0 bits (676), Expect = 7.300e-67
Identity = 122/135 (90.37%), Postives = 127/135 (94.07%), Query Frame = 0 
Query:  187 LFHAVKRLPG-YLALAEDDDGKRNTWTADEDKILASLVDKYGPKKWGIVATYLPMRNAKQCHQRWHYVLKPSISRETWTEREDYIIYHYQRLLGNKWSHIAKYLSGRTGYAVRNRHAFLVKHYKGGKVPAPPGES 321
            +FHAVK LPG  + LA +DDGKRNTWTADEDKILASLV+KYGPKKWGIVATYLPMRNAKQCHQRWHYVLKPSISRETWTE+EDYIIYHYQRLLGNKWSHIAKYLSGRTGYAVRNRHAFLVKHYKGGKVP PP  S
Sbjct: 1259 VFHAVKHLPGPLMGLAMEDDGKRNTWTADEDKILASLVEKYGPKKWGIVATYLPMRNAKQCHQRWHYVLKPSISRETWTEKEDYIIYHYQRLLGNKWSHIAKYLSGRTGYAVRNRHAFLVKHYKGGKVPVPPASS 1393
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BLAST of NO14G00760 vs. NCBI_GenBank
Match: EWM30072.1 (transcriptional activator myb [Nannochloropsis gaditana])

HSP 1 Score: 151.0 bits (380), Expect = 1.500e-32
Identity = 67/103 (65.05%), Postives = 79/103 (76.70%), Query Frame = 0 
Query:  204 DDGKRNTWTADEDKILASLVDKYGPKKWGIVATYLPMRNAKQCHQRWHYVLKPSISRETWTEREDYIIYHYQRLLGNKWSHIAKYLSGRTGYAVRNRHAFLVK 307
            D  KR+TWT +ED+ L  LV   GP+KWGI++T+   RNAKQCHQRWHYVLKPSI+RE WTE ED  I  YQ  +GNKWS IAK+L GRTGYA+RNR+ FL K
Sbjct:    3 DPNKRHTWTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSK 105
[Close]
BLAST of NO14G00760 vs. NCBI_GenBank
Match: XP_020550693.1 (uncharacterized protein LOC105164125 [Sesamum indicum])

HSP 1 Score: 113.6 bits (283), Expect = 2.700e-21
Identity = 48/99 (48.48%), Postives = 66/99 (66.67%), Query Frame = 0 
Query:  208 RNTWTADEDKILASLVDKYGPKKWGIVATYLPMRNAKQCHQRWHYVLKPSISRETWTEREDYIIYHYQRLLGNKWSHIAKYLSGRTGYAVRNRHAFLVK 307
            ++ WT +ED  +  LV KYG KKW  +A YLP R  KQC +RWH  L P+I ++ WTE E+ I+ HY ++LGNKW+ IA++L GRT  A++N     VK
Sbjct:  108 KSPWTKEEDDCIIELVGKYGSKKWSTIAKYLPGRIGKQCRERWHNHLDPAIKKDAWTEEEEAILAHYHQVLGNKWAEIARFLPGRTDNAIKNHWNCSVK 206
[Close]
BLAST of NO14G00760 vs. NCBI_GenBank
Match: XP_009527049.1 (hypothetical protein PHYSODRAFT_383342, partial [Phytophthora sojae] >EGZ17991.1 hypothetical protein PHYSODRAFT_383342, partial [Phytophthora sojae])

HSP 1 Score: 111.7 bits (278), Expect = 1.000e-20
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 0 
Query:  208 RNTWTADEDKILASLVDKYGPKKWGIVATYLPMRNAKQCHQRWHYVLKPSISRETWTEREDYIIYHYQRLLGNKWSHIAKYLSGRTGYAVRNR 301
            R  WT  ED++L+++VD  G  +W IVA++LP RNAKQC +RWH+ L P+I RE W+  ED ++   QR LGN WS +A YL GRT  A++NR
Sbjct:   47 RQPWTEHEDELLSAIVDSEGASQWTIVASFLPGRNAKQCRERWHHQLNPAIKREAWSADEDALLVTLQRKLGNAWSRMAAYLPGRTDNAIKNR 139
[Close]
BLAST of NO14G00760 vs. NCBI_GenBank
Match: PSS04146.1 (Myb-related protein like [Actinidia chinensis var. chinensis])

HSP 1 Score: 111.7 bits (278), Expect = 1.000e-20
Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = 0 
Query:  208 RNTWTADEDKILASLVDKYGPKKWGIVATYLPMRNAKQCHQRWHYVLKPSISRETWTEREDYIIYHYQRLLGNKWSHIAKYLSGRTGYAVRNRHAFLVK 307
            +  WT +ED  +  LV+KYG KKW  +A +LP R  KQC +RWH  L P+I +E WT+ E+ ++ HY R+ GNKW+ IAK+L GRT  A++N     VK
Sbjct:  168 KGPWTKEEDDRIIELVEKYGCKKWSCIAKFLPGRIGKQCRERWHNHLDPAIKKEAWTKEEESVLTHYHRIYGNKWAEIAKFLPGRTDNAIKNHWNCSVK 266
[Close]
BLAST of NO14G00760 vs. NCBI_GenBank
Match: XP_023694882.1 (transcriptional activator Myb-like isoform X3 [Paramormyrops kingsleyae])

HSP 1 Score: 111.3 bits (277), Expect = 1.300e-20
Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 0 
Query:  208 RNTWTADEDKILASLVDKYGPKKWGIVATYLPMRNAKQCHQRWHYVLKPSISRETWTEREDYIIYHYQRLLGNKWSHIAKYLSGRTGYAVRN 300
            +  WT +EDK +  LV KYGPK+W ++A YL  R  KQC +RWH  L P + + +WTE+ED IIY   + LGN+W+ IAK L GRT  A++N
Sbjct:  133 KGPWTKEEDKKVIELVQKYGPKRWSVIAKYLKGRIGKQCRERWHNHLNPEVKKTSWTEKEDQIIYQAHKKLGNRWAEIAKLLPGRTDNAIKN 224
[Close]
BLAST of NO14G00760 vs. NCBI_GenBank
Match: XP_023694881.1 (transcriptional activator Myb-like isoform X2 [Paramormyrops kingsleyae])

HSP 1 Score: 111.3 bits (277), Expect = 1.300e-20
Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 0 
Query:  208 RNTWTADEDKILASLVDKYGPKKWGIVATYLPMRNAKQCHQRWHYVLKPSISRETWTEREDYIIYHYQRLLGNKWSHIAKYLSGRTGYAVRN 300
            +  WT +EDK +  LV KYGPK+W ++A YL  R  KQC +RWH  L P + + +WTE+ED IIY   + LGN+W+ IAK L GRT  A++N
Sbjct:  133 KGPWTKEEDKKVIELVQKYGPKRWSVIAKYLKGRIGKQCRERWHNHLNPEVKKTSWTEKEDQIIYQAHKKLGNRWAEIAKLLPGRTDNAIKN 224
[Close]
BLAST of NO14G00760 vs. NCBI_GenBank
Match: XP_023694883.1 (transcriptional activator Myb-like isoform X4 [Paramormyrops kingsleyae])

HSP 1 Score: 111.3 bits (277), Expect = 1.300e-20
Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 0 
Query:  208 RNTWTADEDKILASLVDKYGPKKWGIVATYLPMRNAKQCHQRWHYVLKPSISRETWTEREDYIIYHYQRLLGNKWSHIAKYLSGRTGYAVRN 300
            +  WT +EDK +  LV KYGPK+W ++A YL  R  KQC +RWH  L P + + +WTE+ED IIY   + LGN+W+ IAK L GRT  A++N
Sbjct:   37 KGPWTKEEDKKVIELVQKYGPKRWSVIAKYLKGRIGKQCRERWHNHLNPEVKKTSWTEKEDQIIYQAHKKLGNRWAEIAKLLPGRTDNAIKN 128
[Close]
BLAST of NO14G00760 vs. NCBI_GenBank
Match: XP_023694880.1 (transcriptional activator Myb-like isoform X1 [Paramormyrops kingsleyae])

HSP 1 Score: 111.3 bits (277), Expect = 1.300e-20
Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 0 
Query:  208 RNTWTADEDKILASLVDKYGPKKWGIVATYLPMRNAKQCHQRWHYVLKPSISRETWTEREDYIIYHYQRLLGNKWSHIAKYLSGRTGYAVRN 300
            +  WT +EDK +  LV KYGPK+W ++A YL  R  KQC +RWH  L P + + +WTE+ED IIY   + LGN+W+ IAK L GRT  A++N
Sbjct:  133 KGPWTKEEDKKVIELVQKYGPKRWSVIAKYLKGRIGKQCRERWHNHLNPEVKKTSWTEKEDQIIYQAHKKLGNRWAEIAKLLPGRTDNAIKN 224
[Close]
BLAST of NO14G00760 vs. NCBI_GenBank
Match: XP_009108388.1 (PREDICTED: transcription factor MYB98-like [Brassica rapa])

HSP 1 Score: 110.9 bits (276), Expect = 1.800e-20
Identity = 50/100 (50.00%), Postives = 67/100 (67.00%), Query Frame = 0 
Query:  206 GKRNT------WTADEDKILASLVDKYGPKKWGIVATYLPMRNAKQCHQRWHYVLKPSISRETWTEREDYIIYHYQRLLGNKWSHIAKYLSGRTGYAVRN 300
            GK NT      WTA+EDKIL  LV+KYG +KW  +A  LP R  KQC +RWH  L+P I +ETW+E ED ++  + + +GNKW+ IAK L GRT  +++N
Sbjct:  209 GKNNTTLVKGQWTAEEDKILVQLVEKYGLRKWSHIAQVLPGRIGKQCRERWHNHLRPDIKKETWSEDEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKN 308
The following BLAST results are available for this feature:
BLAST of NO14G00760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24723.17.300e-6790.37myb family transcription factor [Nannochloropsis g... [more]
EWM30072.11.500e-3265.05transcriptional activator myb [Nannochloropsis gad... [more]
XP_020550693.12.700e-2148.48uncharacterized protein LOC105164125 [Sesamum indi... [more]
XP_009527049.11.000e-2051.61hypothetical protein PHYSODRAFT_383342, partial [P... [more]
PSS04146.11.000e-2047.47Myb-related protein like [Actinidia chinensis var.... [more]
XP_023694882.11.300e-2050.00transcriptional activator Myb-like isoform X3 [Par... [more]
XP_023694881.11.300e-2050.00transcriptional activator Myb-like isoform X2 [Par... [more]
XP_023694883.11.300e-2050.00transcriptional activator Myb-like isoform X4 [Par... [more]
XP_023694880.11.300e-2050.00transcriptional activator Myb-like isoform X1 [Par... [more]
XP_009108388.11.800e-2050.00PREDICTED: transcription factor MYB98-like [Brassi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL139nonsL139Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR024ngnoR024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002280NSK002280Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00760.1NO14G00760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670935gene_5644Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100180g7gene5764Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00760.1NO14G00760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00760 ID=NO14G00760|Name=NO14G00760|organism=Nannochloropsis oceanica|type=gene|length=2911bp
CACCCACACCATATACATATGCACACACATACAAAAATAGATTGAAAAAA
CATAGGAAAGACAGTAAGAACACACGTGCAGACACGAAAACATGTCCTTC
TATCGCACCCGCTATCGCGGCAGTAAGTCCCCGACGACGGTCGAGCTCGA
GACAAAGAACAATCAGTGCCTGGGCGAGGATGAGGACGAGGAGGAGCTGC
AAGCCCGCCGCCAGGACAAAAAGAAAAAAATTACCAGACGACACGGTCGC
TCTCCCTACTCGGATGATGACGACGATGATGATGATGATGATGGCTCCTA
CTGCATTGCTGATGAAGAGGAGCTTGACGATTCCGACCCTGAGGTGGCTA
CAGCCAAGGCGCTGCTGATGCAAGGACGAGGGCCCGGCCCCGCCTCCCCC
TTCCGCTGGGCTGGTTCCCCTATTTCAGATGATTCCTCAATGGCCACACA
CGCTGCCCGTACCCTCATGACACCTCCGCCCGTAGTACCCGCTCTGCCGG
TGGGTAACGGACCCAACATTCATCTCTACGACGGCGTGAATCGTGGCCCG
CCCCGGCACTCGCACCCGGCTTCTGCCAGCGGTGATGGTGGTGATGGTAG
CCATAATATTGATTCATCTTTATCCTCCTCTTCCCCCCACCAACCTCCGC
TATTTCACGCTGTCAAGCGCCTCCCGGGCTATCTCGCCCTGGCCGAGGAC
GATGACGGCAAACGCAATACCTGGACCGCTGACGAAGACAAGATTTTGGC
CTCCCTCGTGGACAAATACGGGCCCAAAAAATGGGGCATTGTCGCCACCT
ACCTCCCCATGCGCAATGCTAAACAATGTCACCAACGCTGGCACTACGTG
TTGAAGCCGAGCATTTCCCGCGAGACCTGGACAGAGCGAGAGGACTACAT
CATCTATCACTACCAGCGGCTCCTCGGCAATAAATGGTCGCATATCGCCA
AGTACCTCTCGGGCCGAACAGGCTATGCCGTTCGTAACCGTCACGCCTTC
TTGGTGAAACATTACAAGGGAGGAAAGGTGCCGGCTCCTCCGGGGGAGAG
TCTGCCCTCTACCAATCCCAAGACGAATGGTAAGCCTATCCGCCGCACCA
ACAACAGCATCATGGCGGCGCATGCCCGCAAGATGAAGAAGTTGAAAAAG
CAAATGGCGGCTGTTGGGGTCTTGCATGAGTTCAAGAAGGTGGGATTCGG
GGAAGGGGAAGATCGGAAGCGGAAGGCAGTGGATCGTCGTCGTGAGGCGG
ACGAGGACAAGGAGGATCTAGCGGAGGACGAAGAGGCGGAGATCAACGAC
AATTTCAAGGAGGCGGGGATAGCCCGCACCAGCACCGTTGCAGGCCGTGC
TGGAGGGAACCTTCGTGTCTCGTGCGGCCTGGGTGATTCGCTGGCTGATG
TTGCGCCCGTCGCGCGTACGCCCCCCCCCTCTTTCACAGCACCCTGGGCT
ACCTCCCCCCGTTCTTCTTTGGATCTGCTCGCAACACTGCCGCACGTGGA
CCTCATGCAGCTATCGTTGCCCAGCCCCAGTCCGCGTTCGCGCAGTTTTT
TTGATACGCATTTTCCTAACCTGGGTAGCCCCCAGCAGGCTCATCCCATG
CCTTCCCCTCATCATCCCCCGCACATGCAACCCCCTGTCATCCACTCTCC
ATCCCCTTTGTCAGTGCAAGGCCCTCCTGCCTCTTTTCAATTTCATCGAC
ATCCGATGGAGTCTTGTACGTCTCCCTCTTGGGCGGCTGGCGTAGGAGTG
GTGAACCCTGCCCCCTCAGACTTGCGTTCATTTGCAAGCCCTCAGACTAG
CCCTCGTCAGCCTACGCACCACATCCTCCCCTCATTCTATCGCCATAATG
AAGAGCAGAAGCAGAAGCATATATCTCAGGACAAGGAGAGAGGAGAAAAA
GATGTGACTGTCGTGGTTGGTACGGCTGTGTCATCGGCCATGAGCGTGGG
GGAGGATGAAGCGTTGCGCCGGCACCGTGAGAACGCACAAATGGTAGTCG
CATCGTGGAATGCGGAGGGAGGGGAGGAAGGGCAGGAGTCTTGTGAGGAG
GAAGAGTCAGGCAAGGAGCATGCGAGACGACAACACCGCAGTGAGGATAC
TGATAAGAAGGTGGAAATGGGAGTGTGTAATGAGGGTGATGCAGAGGAGG
CAGAGGAGGACGATGCGGAGGAAGATGACGGGCGTGAGTATGGCTTGCGT
GATTTAGCTTTGGCGGCGGCTCAAGAAGCTGCTGAAGAAGAGGTAGATGA
TGATGATGATGATGAAGGGGATAGAAATGCTAATGAGATAGAGGAAGAGG
AGGAGGTGGAGGAGGAAGAGGAGGAGAAGAGGAGCGGGGAGGAGGAGGAG
GCGGTGGATGACGAGGACGATCCACATTACCATGTGAAGCGCCCTAAGCT
CCAAAGTTGAGATAACGGGAAAGAAAAATGCGAGGTGCCTTTTCGAACGT
CATTTGTGGAAAGTTTGTAGCGGGCGTCCTGATTGAAGAGATAGAAGAGA
CAGAAGACAATCAAAAGATGAGATTGGTGTGTAAAAAACAAGAAAAGCCC
CCCAAAAAAAGGAATGGAAAGAAATAGGGAATGGAAGAAAGACATTCAAA
ACGGGGGCGGGGGCGGGGGATAGACGAATTCCATCAGAAACAAAGTGAGG
TAACAAAGACGTGTTTTTGAAAGAGTCAGCAAAAGATTTTGCACGGCAGG
GGGTGCAGAAATTATGCCTGCAAAATTGATACTCTTCTTTGCTAGAGACA
ATTTTATCATTATGAAGGAATCGATTATTTATGAGTGCATTAATGAGAGA
AAGCATGGCATCAGAGAGACAAACATAAAGAGAATATTTAAAGACAATGA
AAGGTGGAACGACAAGAAAGTATGCAGAAAATAGGAGTTCACAAGACTTC
AAATCAAGTCA
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protein sequence of NO14G00760.1

>NO14G00760.1-protein ID=NO14G00760.1-protein|Name=NO14G00760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=773bp
MSFYRTRYRGSKSPTTVELETKNNQCLGEDEDEEELQARRQDKKKKITRR
HGRSPYSDDDDDDDDDDGSYCIADEEELDDSDPEVATAKALLMQGRGPGP
ASPFRWAGSPISDDSSMATHAARTLMTPPPVVPALPVGNGPNIHLYDGVN
RGPPRHSHPASASGDGGDGSHNIDSSLSSSSPHQPPLFHAVKRLPGYLAL
AEDDDGKRNTWTADEDKILASLVDKYGPKKWGIVATYLPMRNAKQCHQRW
HYVLKPSISRETWTEREDYIIYHYQRLLGNKWSHIAKYLSGRTGYAVRNR
HAFLVKHYKGGKVPAPPGESLPSTNPKTNGKPIRRTNNSIMAAHARKMKK
LKKQMAAVGVLHEFKKVGFGEGEDRKRKAVDRRREADEDKEDLAEDEEAE
INDNFKEAGIARTSTVAGRAGGNLRVSCGLGDSLADVAPVARTPPPSFTA
PWATSPRSSLDLLATLPHVDLMQLSLPSPSPRSRSFFDTHFPNLGSPQQA
HPMPSPHHPPHMQPPVIHSPSPLSVQGPPASFQFHRHPMESCTSPSWAAG
VGVVNPAPSDLRSFASPQTSPRQPTHHILPSFYRHNEEQKQKHISQDKER
GEKDVTVVVGTAVSSAMSVGEDEALRRHRENAQMVVASWNAEGGEEGQES
CEEEESGKEHARRQHRSEDTDKKVEMGVCNEGDAEEAEEDDAEEDDGREY
GLRDLALAAAQEAAEEEVDDDDDDEGDRNANEIEEEEEVEEEEEEKRSGE
EEEAVDDEDDPHYHVKRPKLQS*
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Synonyms
Publications