NO14G00760.1, NO14G00760.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO14G00760.1
Unique Name	NO14G00760.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2911
Alignment location	chr14:268197..271107 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr14	genome	chr14:268197..271107 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO14G00760.1 vs.
Match: EWM24723.1 (myb family transcription factor [Nannochloropsis gaditana])

HSP 1 Score: 265.0 bits (676), Expect = 7.300e-67
Identity = 123/135 (91.11%), Postives = 127/135 (94.07%), Query Frame = 0

Query:  187 LFHAVKRLPGYL-ALAEDDDGKRNTWTADEDKILASLVDKYGPKKWGIVATYLPMRNAKQCHQRWHYVLKPSISRETWTEREDYIIYHYQRLLGNKWSHIAKYLSGRTGYAVRNRHAFLVKHYKGGKVPAPPGES 321
            +FHAVK LPG L  LA +DDGKRNTWTADEDKILASLV+KYGPKKWGIVATYLPMRNAKQCHQRWHYVLKPSISRETWTE+EDYIIYHYQRLLGNKWSHIAKYLSGRTGYAVRNRHAFLVKHYKGGKVP PP  S
Sbjct: 1259 VFHAVKHLPGPLMGLAMEDDGKRNTWTADEDKILASLVEKYGPKKWGIVATYLPMRNAKQCHQRWHYVLKPSISRETWTEKEDYIIYHYQRLLGNKWSHIAKYLSGRTGYAVRNRHAFLVKHYKGGKVPVPPASS 1393

The following BLAST results are available for this feature:

BLAST of NO14G00760.1 vs.

BLAST of NO14G00760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24723.1	7.300e-67	91.11	myb family transcription factor [Nannochloropsis g...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO14G00760	NO14G00760	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO14G00760.1	NO14G00760.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO14G00760.1.cds1	NO14G00760.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr14:268197..271107-
coding sequence from alignment at chr14:268197..271107-

mRNA sequence

>NO14G00760.1 ID=NO14G00760.1|Name=NO14G00760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2911bp
CACCCACACCATATACATATGCACACACATACAAAAATAGATTGAAAAAA
CATAGGAAAGACAGTAAGAACACACGTGCAGACACGAAAACATGTCCTTC
TATCGCACCCGCTATCGCGGCAGTAAGTCCCCGACGACGGTCGAGCTCGA
GACAAAGAACAATCAGTGCCTGGGCGAGGATGAGGACGAGGAGGAGCTGC
AAGCCCGCCGCCAGGACAAAAAGAAAAAAATTACCAGACGACACGGTCGC
TCTCCCTACTCGGATGATGACGACGATGATGATGATGATGATGGCTCCTA
CTGCATTGCTGATGAAGAGGAGCTTGACGATTCCGACCCTGAGGTGGCTA
CAGCCAAGGCGCTGCTGATGCAAGGACGAGGGCCCGGCCCCGCCTCCCCC
TTCCGCTGGGCTGGTTCCCCTATTTCAGATGATTCCTCAATGGCCACACA
CGCTGCCCGTACCCTCATGACACCTCCGCCCGTAGTACCCGCTCTGCCGG
TGGGTAACGGACCCAACATTCATCTCTACGACGGCGTGAATCGTGGCCCG
CCCCGGCACTCGCACCCGGCTTCTGCCAGCGGTGATGGTGGTGATGGTAG
CCATAATATTGATTCATCTTTATCCTCCTCTTCCCCCCACCAACCTCCGC
TATTTCACGCTGTCAAGCGCCTCCCGGGCTATCTCGCCCTGGCCGAGGAC
GATGACGGCAAACGCAATACCTGGACCGCTGACGAAGACAAGATTTTGGC
CTCCCTCGTGGACAAATACGGGCCCAAAAAATGGGGCATTGTCGCCACCT
ACCTCCCCATGCGCAATGCTAAACAATGTCACCAACGCTGGCACTACGTG
TTGAAGCCGAGCATTTCCCGCGAGACCTGGACAGAGCGAGAGGACTACAT
CATCTATCACTACCAGCGGCTCCTCGGCAATAAATGGTCGCATATCGCCA
AGTACCTCTCGGGCCGAACAGGCTATGCCGTTCGTAACCGTCACGCCTTC
TTGGTGAAACATTACAAGGGAGGAAAGGTGCCGGCTCCTCCGGGGGAGAG
TCTGCCCTCTACCAATCCCAAGACGAATGGTAAGCCTATCCGCCGCACCA
ACAACAGCATCATGGCGGCGCATGCCCGCAAGATGAAGAAGTTGAAAAAG
CAAATGGCGGCTGTTGGGGTCTTGCATGAGTTCAAGAAGGTGGGATTCGG
GGAAGGGGAAGATCGGAAGCGGAAGGCAGTGGATCGTCGTCGTGAGGCGG
ACGAGGACAAGGAGGATCTAGCGGAGGACGAAGAGGCGGAGATCAACGAC
AATTTCAAGGAGGCGGGGATAGCCCGCACCAGCACCGTTGCAGGCCGTGC
TGGAGGGAACCTTCGTGTCTCGTGCGGCCTGGGTGATTCGCTGGCTGATG
TTGCGCCCGTCGCGCGTACGCCCCCCCCCTCTTTCACAGCACCCTGGGCT
ACCTCCCCCCGTTCTTCTTTGGATCTGCTCGCAACACTGCCGCACGTGGA
CCTCATGCAGCTATCGTTGCCCAGCCCCAGTCCGCGTTCGCGCAGTTTTT
TTGATACGCATTTTCCTAACCTGGGTAGCCCCCAGCAGGCTCATCCCATG
CCTTCCCCTCATCATCCCCCGCACATGCAACCCCCTGTCATCCACTCTCC
ATCCCCTTTGTCAGTGCAAGGCCCTCCTGCCTCTTTTCAATTTCATCGAC
ATCCGATGGAGTCTTGTACGTCTCCCTCTTGGGCGGCTGGCGTAGGAGTG
GTGAACCCTGCCCCCTCAGACTTGCGTTCATTTGCAAGCCCTCAGACTAG
CCCTCGTCAGCCTACGCACCACATCCTCCCCTCATTCTATCGCCATAATG
AAGAGCAGAAGCAGAAGCATATATCTCAGGACAAGGAGAGAGGAGAAAAA
GATGTGACTGTCGTGGTTGGTACGGCTGTGTCATCGGCCATGAGCGTGGG
GGAGGATGAAGCGTTGCGCCGGCACCGTGAGAACGCACAAATGGTAGTCG
CATCGTGGAATGCGGAGGGAGGGGAGGAAGGGCAGGAGTCTTGTGAGGAG
GAAGAGTCAGGCAAGGAGCATGCGAGACGACAACACCGCAGTGAGGATAC
TGATAAGAAGGTGGAAATGGGAGTGTGTAATGAGGGTGATGCAGAGGAGG
CAGAGGAGGACGATGCGGAGGAAGATGACGGGCGTGAGTATGGCTTGCGT
GATTTAGCTTTGGCGGCGGCTCAAGAAGCTGCTGAAGAAGAGGTAGATGA
TGATGATGATGATGAAGGGGATAGAAATGCTAATGAGATAGAGGAAGAGG
AGGAGGTGGAGGAGGAAGAGGAGGAGAAGAGGAGCGGGGAGGAGGAGGAG
GCGGTGGATGACGAGGACGATCCACATTACCATGTGAAGCGCCCTAAGCT
CCAAAGTTGAGATAACGGGAAAGAAAAATGCGAGGTGCCTTTTCGAACGT
CATTTGTGGAAAGTTTGTAGCGGGCGTCCTGATTGAAGAGATAGAAGAGA
CAGAAGACAATCAAAAGATGAGATTGGTGTGTAAAAAACAAGAAAAGCCC
CCCAAAAAAAGGAATGGAAAGAAATAGGGAATGGAAGAAAGACATTCAAA
ACGGGGGCGGGGGCGGGGGATAGACGAATTCCATCAGAAACAAAGTGAGG
TAACAAAGACGTGTTTTTGAAAGAGTCAGCAAAAGATTTTGCACGGCAGG
GGGTGCAGAAATTATGCCTGCAAAATTGATACTCTTCTTTGCTAGAGACA
ATTTTATCATTATGAAGGAATCGATTATTTATGAGTGCATTAATGAGAGA
AAGCATGGCATCAGAGAGACAAACATAAAGAGAATATTTAAAGACAATGA
AAGGTGGAACGACAAGAAAGTATGCAGAAAATAGGAGTTCACAAGACTTC
AAATCAAGTCA

protein sequence of NO14G00760.1

>NO14G00760.1-protein ID=NO14G00760.1-protein|Name=NO14G00760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=773bp
MSFYRTRYRGSKSPTTVELETKNNQCLGEDEDEEELQARRQDKKKKITRR
HGRSPYSDDDDDDDDDDGSYCIADEEELDDSDPEVATAKALLMQGRGPGP
ASPFRWAGSPISDDSSMATHAARTLMTPPPVVPALPVGNGPNIHLYDGVN
RGPPRHSHPASASGDGGDGSHNIDSSLSSSSPHQPPLFHAVKRLPGYLAL
AEDDDGKRNTWTADEDKILASLVDKYGPKKWGIVATYLPMRNAKQCHQRW
HYVLKPSISRETWTEREDYIIYHYQRLLGNKWSHIAKYLSGRTGYAVRNR
HAFLVKHYKGGKVPAPPGESLPSTNPKTNGKPIRRTNNSIMAAHARKMKK
LKKQMAAVGVLHEFKKVGFGEGEDRKRKAVDRRREADEDKEDLAEDEEAE
INDNFKEAGIARTSTVAGRAGGNLRVSCGLGDSLADVAPVARTPPPSFTA
PWATSPRSSLDLLATLPHVDLMQLSLPSPSPRSRSFFDTHFPNLGSPQQA
HPMPSPHHPPHMQPPVIHSPSPLSVQGPPASFQFHRHPMESCTSPSWAAG
VGVVNPAPSDLRSFASPQTSPRQPTHHILPSFYRHNEEQKQKHISQDKER
GEKDVTVVVGTAVSSAMSVGEDEALRRHRENAQMVVASWNAEGGEEGQES
CEEEESGKEHARRQHRSEDTDKKVEMGVCNEGDAEEAEEDDAEEDDGREY
GLRDLALAAAQEAAEEEVDDDDDDEGDRNANEIEEEEEVEEEEEEKRSGE
EEEAVDDEDDPHYHVKRPKLQS*

mRNA from alignment at chr14:268197..271107-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO14G00760.1 ID=NO14G00760.1|Name=NO14G00760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2911bp|location=Sequence derived from alignment at chr14:268197..271107- (Nannochloropsis oceanica)
CACCCACACCATATACATATGCACACACATACAAAAATAGATTGAAAAAA
CATAGGAAAGACAGTAAGAACACACGTGCAGACACGAAAACATGTCCTTC
TATCGCACCCGCTATCGCGGCAGTAAGTCCCCGACGACGGTCGAGCTCGA
GACAAAGAACAATCAGTGCCTGGGCGAGGATGAGGACGAGGAGGAGCTGC
AAGCCCGCCGCCAGGACAAAAAGAAAAAAATTACCAGACGACACGGTCGC
TCTCCCTACTCGGATGATGACGACGATGATGATGATGATGATGGCTCCTA
CTGCATTGCTGATGAAGAGGAGCTTGACGATTCCGACCCTGAGGTGGCTA
CAGCCAAGGCGCTGCTGATGCAAGGACGAGGGCCCGGCCCCGCCTCCCCC
TTCCGCTGGGCTGGTTCCCCTATTTCAGATGATTCCTCAATGGCCACACA
CGCTGCCCGTACCCTCATGACACCTCCGCCCGTAGTACCCGCTCTGCCGG
TGGGTAACGGACCCAACATTCATCTCTACGACGGCGTGAATCGTGGCCCG
CCCCGGCACTCGCACCCGGCTTCTGCCAGCGGTGATGGTGGTGATGGTAG
CCATAATATTGATTCATCTTTATCCTCCTCTTCCCCCCACCAACCTCCGC
TATTTCACGCTGTCAAGCGCCTCCCGGGCTATCTCGCCCTGGCCGAGGAC
GATGACGGCAAACGCAATACCTGGACCGCTGACGAAGACAAGATTTTGGC
CTCCCTCGTGGACAAATACGGGCCCAAAAAATGGGGCATTGTCGCCACCT
ACCTCCCCATGCGCAATGCTAAACAATGTCACCAACGCTGGCACTACGTG
TTGAAGCCGAGCATTTCCCGCGAGACCTGGACAGAGCGAGAGGACTACAT
CATCTATCACTACCAGCGGCTCCTCGGCAATAAATGGTCGCATATCGCCA
AGTACCTCTCGGGCCGAACAGGCTATGCCGTTCGTAACCGTCACGCCTTC
TTGGTGAAACATTACAAGGGAGGAAAGGTGCCGGCTCCTCCGGGGGAGAG
TCTGCCCTCTACCAATCCCAAGACGAATGGTAAGCCTATCCGCCGCACCA
ACAACAGCATCATGGCGGCGCATGCCCGCAAGATGAAGAAGTTGAAAAAG
CAAATGGCGGCTGTTGGGGTCTTGCATGAGTTCAAGAAGGTGGGATTCGG
GGAAGGGGAAGATCGGAAGCGGAAGGCAGTGGATCGTCGTCGTGAGGCGG
ACGAGGACAAGGAGGATCTAGCGGAGGACGAAGAGGCGGAGATCAACGAC
AATTTCAAGGAGGCGGGGATAGCCCGCACCAGCACCGTTGCAGGCCGTGC
TGGAGGGAACCTTCGTGTCTCGTGCGGCCTGGGTGATTCGCTGGCTGATG
TTGCGCCCGTCGCGCGTACGCCCCCCCCCTCTTTCACAGCACCCTGGGCT
ACCTCCCCCCGTTCTTCTTTGGATCTGCTCGCAACACTGCCGCACGTGGA
CCTCATGCAGCTATCGTTGCCCAGCCCCAGTCCGCGTTCGCGCAGTTTTT
TTGATACGCATTTTCCTAACCTGGGTAGCCCCCAGCAGGCTCATCCCATG
CCTTCCCCTCATCATCCCCCGCACATGCAACCCCCTGTCATCCACTCTCC
ATCCCCTTTGTCAGTGCAAGGCCCTCCTGCCTCTTTTCAATTTCATCGAC
ATCCGATGGAGTCTTGTACGTCTCCCTCTTGGGCGGCTGGCGTAGGAGTG
GTGAACCCTGCCCCCTCAGACTTGCGTTCATTTGCAAGCCCTCAGACTAG
CCCTCGTCAGCCTACGCACCACATCCTCCCCTCATTCTATCGCCATAATG
AAGAGCAGAAGCAGAAGCATATATCTCAGGACAAGGAGAGAGGAGAAAAA
GATGTGACTGTCGTGGTTGGTACGGCTGTGTCATCGGCCATGAGCGTGGG
GGAGGATGAAGCGTTGCGCCGGCACCGTGAGAACGCACAAATGGTAGTCG
CATCGTGGAATGCGGAGGGAGGGGAGGAAGGGCAGGAGTCTTGTGAGGAG
GAAGAGTCAGGCAAGGAGCATGCGAGACGACAACACCGCAGTGAGGATAC
TGATAAGAAGGTGGAAATGGGAGTGTGTAATGAGGGTGATGCAGAGGAGG
CAGAGGAGGACGATGCGGAGGAAGATGACGGGCGTGAGTATGGCTTGCGT
GATTTAGCTTTGGCGGCGGCTCAAGAAGCTGCTGAAGAAGAGGTAGATGA
TGATGATGATGATGAAGGGGATAGAAATGCTAATGAGATAGAGGAAGAGG
AGGAGGTGGAGGAGGAAGAGGAGGAGAAGAGGAGCGGGGAGGAGGAGGAG
GCGGTGGATGACGAGGACGATCCACATTACCATGTGAAGCGCCCTAAGCT
CCAAAGTTGAGATAACGGGAAAGAAAAATGCGAGGTGCCTTTTCGAACGT
CATTTGTGGAAAGTTTGTAGCGGGCGTCCTGATTGAAGAGATAGAAGAGA
CAGAAGACAATCAAAAGATGAGATTGGTGTGTAAAAAACAAGAAAAGCCC
CCCAAAAAAAGGAATGGAAAGAAATAGGGAATGGAAGAAAGACATTCAAA
ACGGGGGCGGGGGCGGGGGATAGACGAATTCCATCAGAAACAAAGTGAGG
TAACAAAGACGTGTTTTTGAAAGAGTCAGCAAAAGATTTTGCACGGCAGG
GGGTGCAGAAATTATGCCTGCAAAATTGATACTCTTCTTTGCTAGAGACA
ATTTTATCATTATGAAGGAATCGATTATTTATGAGTGCATTAATGAGAGA
AAGCATGGCATCAGAGAGACAAACATAAAGAGAATATTTAAAGACAATGA
AAGGTGGAACGACAAGAAAGTATGCAGAAAATAGGAGTTCACAAGACTTC
AAATCAAGTCA

Coding sequence (CDS) from alignment at chr14:268197..271107-

>NO14G00760.1 ID=NO14G00760.1|Name=NO14G00760.1|organism=Nannochloropsis oceanica|type=CDS|length=2319bp|location=Sequence derived from alignment at chr14:268197..271107- (Nannochloropsis oceanica)
ATGTCCTTCTATCGCACCCGCTATCGCGGCAGTAAGTCCCCGACGACGGT
CGAGCTCGAGACAAAGAACAATCAGTGCCTGGGCGAGGATGAGGACGAGG
AGGAGCTGCAAGCCCGCCGCCAGGACAAAAAGAAAAAAATTACCAGACGA
CACGGTCGCTCTCCCTACTCGGATGATGACGACGATGATGATGATGATGA
TGGCTCCTACTGCATTGCTGATGAAGAGGAGCTTGACGATTCCGACCCTG
AGGTGGCTACAGCCAAGGCGCTGCTGATGCAAGGACGAGGGCCCGGCCCC
GCCTCCCCCTTCCGCTGGGCTGGTTCCCCTATTTCAGATGATTCCTCAAT
GGCCACACACGCTGCCCGTACCCTCATGACACCTCCGCCCGTAGTACCCG
CTCTGCCGGTGGGTAACGGACCCAACATTCATCTCTACGACGGCGTGAAT
CGTGGCCCGCCCCGGCACTCGCACCCGGCTTCTGCCAGCGGTGATGGTGG
TGATGGTAGCCATAATATTGATTCATCTTTATCCTCCTCTTCCCCCCACC
AACCTCCGCTATTTCACGCTGTCAAGCGCCTCCCGGGCTATCTCGCCCTG
GCCGAGGACGATGACGGCAAACGCAATACCTGGACCGCTGACGAAGACAA
GATTTTGGCCTCCCTCGTGGACAAATACGGGCCCAAAAAATGGGGCATTG
TCGCCACCTACCTCCCCATGCGCAATGCTAAACAATGTCACCAACGCTGG
CACTACGTGTTGAAGCCGAGCATTTCCCGCGAGACCTGGACAGAGCGAGA
GGACTACATCATCTATCACTACCAGCGGCTCCTCGGCAATAAATGGTCGC
ATATCGCCAAGTACCTCTCGGGCCGAACAGGCTATGCCGTTCGTAACCGT
CACGCCTTCTTGGTGAAACATTACAAGGGAGGAAAGGTGCCGGCTCCTCC
GGGGGAGAGTCTGCCCTCTACCAATCCCAAGACGAATGGTAAGCCTATCC
GCCGCACCAACAACAGCATCATGGCGGCGCATGCCCGCAAGATGAAGAAG
TTGAAAAAGCAAATGGCGGCTGTTGGGGTCTTGCATGAGTTCAAGAAGGT
GGGATTCGGGGAAGGGGAAGATCGGAAGCGGAAGGCAGTGGATCGTCGTC
GTGAGGCGGACGAGGACAAGGAGGATCTAGCGGAGGACGAAGAGGCGGAG
ATCAACGACAATTTCAAGGAGGCGGGGATAGCCCGCACCAGCACCGTTGC
AGGCCGTGCTGGAGGGAACCTTCGTGTCTCGTGCGGCCTGGGTGATTCGC
TGGCTGATGTTGCGCCCGTCGCGCGTACGCCCCCCCCCTCTTTCACAGCA
CCCTGGGCTACCTCCCCCCGTTCTTCTTTGGATCTGCTCGCAACACTGCC
GCACGTGGACCTCATGCAGCTATCGTTGCCCAGCCCCAGTCCGCGTTCGC
GCAGTTTTTTTGATACGCATTTTCCTAACCTGGGTAGCCCCCAGCAGGCT
CATCCCATGCCTTCCCCTCATCATCCCCCGCACATGCAACCCCCTGTCAT
CCACTCTCCATCCCCTTTGTCAGTGCAAGGCCCTCCTGCCTCTTTTCAAT
TTCATCGACATCCGATGGAGTCTTGTACGTCTCCCTCTTGGGCGGCTGGC
GTAGGAGTGGTGAACCCTGCCCCCTCAGACTTGCGTTCATTTGCAAGCCC
TCAGACTAGCCCTCGTCAGCCTACGCACCACATCCTCCCCTCATTCTATC
GCCATAATGAAGAGCAGAAGCAGAAGCATATATCTCAGGACAAGGAGAGA
GGAGAAAAAGATGTGACTGTCGTGGTTGGTACGGCTGTGTCATCGGCCAT
GAGCGTGGGGGAGGATGAAGCGTTGCGCCGGCACCGTGAGAACGCACAAA
TGGTAGTCGCATCGTGGAATGCGGAGGGAGGGGAGGAAGGGCAGGAGTCT
TGTGAGGAGGAAGAGTCAGGCAAGGAGCATGCGAGACGACAACACCGCAG
TGAGGATACTGATAAGAAGGTGGAAATGGGAGTGTGTAATGAGGGTGATG
CAGAGGAGGCAGAGGAGGACGATGCGGAGGAAGATGACGGGCGTGAGTAT
GGCTTGCGTGATTTAGCTTTGGCGGCGGCTCAAGAAGCTGCTGAAGAAGA
GGTAGATGATGATGATGATGATGAAGGGGATAGAAATGCTAATGAGATAG
AGGAAGAGGAGGAGGTGGAGGAGGAAGAGGAGGAGAAGAGGAGCGGGGAG
GAGGAGGAGGCGGTGGATGACGAGGACGATCCACATTACCATGTGAAGCG
CCCTAAGCTCCAAAGTTGA

Synonyms

Publications