NO14G00340, NO14G00340 (gene) Nannochloropsis oceanica

Overview
NameNO14G00340
Unique NameNO14G00340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3059
Alignment locationchr14:144366..147424 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:144366..147424 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR016177DNA-bd_dom
IPR001471AP2/ERF_dom
Homology
[Close]
BLAST of NO14G00340 vs. NCBI_GenBank
Match: XP_005854641.1 (hypothetical protein NGA_0192700 [Nannochloropsis gaditana CCMP526] >EKU21717.1 hypothetical protein NGA_0192700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 114.8 bits (286), Expect = 1.200e-21
Identity = 52/71 (73.24%), Postives = 62/71 (87.32%), Query Frame = 0 
Query:  718 DLVGKVRVFLLEKWKGGWGQDVKASEYSRAVELLAQNNDQARRFLEDVSPSTPHLETLALAFIVVMRCGAF 789
            D+  +VR FLLEKWK GWGQDVK  E+++AVELL+Q+N  AR FLEDV+PSTPH+ETLAL+FIVVMRCGAF
Sbjct:  138 DITAQVRSFLLEKWKVGWGQDVKGKEFAKAVELLSQDNASARSFLEDVAPSTPHIETLALSFIVVMRCGAF 208
[Close]
BLAST of NO14G00340 vs. NCBI_GenBank
Match: XP_005853500.1 (hypothetical protein NGA_0504500, partial [Nannochloropsis gaditana CCMP526] >EKU22863.1 hypothetical protein NGA_0504500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 114.8 bits (286), Expect = 1.200e-21
Identity = 52/71 (73.24%), Postives = 62/71 (87.32%), Query Frame = 0 
Query:  718 DLVGKVRVFLLEKWKGGWGQDVKASEYSRAVELLAQNNDQARRFLEDVSPSTPHLETLALAFIVVMRCGAF 789
            D+  +VR FLLEKWK GWGQDVK  E+++AVELL+Q+N  AR FLEDV+PSTPH+ETLAL+FIVVMRCGAF
Sbjct:   88 DITAQVRSFLLEKWKVGWGQDVKGKEFAKAVELLSQDNASARSFLEDVAPSTPHIETLALSFIVVMRCGAF 158
[Close]
BLAST of NO14G00340 vs. NCBI_GenBank
Match: XP_005853499.1 (homing endonuclease rb16 2, partial [Nannochloropsis gaditana CCMP526] >EKU22862.1 homing endonuclease rb16 2, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 89.4 bits (220), Expect = 5.600e-14
Identity = 44/94 (46.81%), Postives = 57/94 (60.64%), Query Frame = 0 
Query:  216 TSTFRGVRWSKQQGRWRVDVHYKGKDLFLAYFNDEIEAARVFDDAASTLYEDGVLLNFLPDGTPNPERRRGRRGIKVKARDPPPPWVVEKLQTL 310
            TS +RG+RW K   +W V + Y+GK L L YF+DE+ AA+ +D  A  LYE   LLNFLP G  NPER+R      ++ R  PPPW  +K   L
Sbjct:   10 TSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELVAAQCYDRRAKELYET-PLLNFLPGGKLNPERKRRVDPRSLRPRRIPPPWCADKFVPL 102
[Close]
BLAST of NO14G00340 vs. NCBI_GenBank
Match: EWM24765.1 (homing endonuclease rb16 2, partial [Nannochloropsis gaditana])

HSP 1 Score: 89.4 bits (220), Expect = 5.600e-14
Identity = 44/94 (46.81%), Postives = 57/94 (60.64%), Query Frame = 0 
Query:  216 TSTFRGVRWSKQQGRWRVDVHYKGKDLFLAYFNDEIEAARVFDDAASTLYEDGVLLNFLPDGTPNPERRRGRRGIKVKARDPPPPWVVEKLQTL 310
            TS +RG+RW K   +W V + Y+GK L L YF+DE+ AA+ +D  A  LYE   LLNFLP G  NPER+R      ++ R  PPPW  +K   L
Sbjct:   10 TSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELVAAQCYDRRAKELYET-PLLNFLPGGKLNPERKRRVDPRSLRPRRIPPPWCADKFVPL 102
[Close]
BLAST of NO14G00340 vs. NCBI_GenBank
Match: XP_005854643.1 (homing endonuclease rb16 2, partial [Nannochloropsis gaditana CCMP526] >EKU21719.1 homing endonuclease rb16 2, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 87.0 bits (214), Expect = 2.800e-13
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 0 
Query:  216 TSTFRGVRWSKQQGRWRVDVHYKGKDLFLAYFNDEIEAARVFDDAASTLYEDGVLLNFLPDGTPNPERRRGRRGIKVKARDPPPPWVVE 305
            TS +RG+RW K   +W V + Y+GK L L YF+DE+ AA+ +D  A  LYE   LLNFLP G  NPER+R      ++ R  PPPW  +
Sbjct:   10 TSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELVAAQCYDRRAKELYET-PLLNFLPGGKLNPERKRRVDPRSLRPRRIPPPWCAD 97
The following BLAST results are available for this feature:
BLAST of NO14G00340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
XP_005854641.11.200e-2173.24hypothetical protein NGA_0192700 [Nannochloropsis ... [more]
XP_005853500.11.200e-2173.24hypothetical protein NGA_0504500, partial [Nannoch... [more]
XP_005853499.15.600e-1446.81homing endonuclease rb16 2, partial [Nannochlorops... [more]
EWM24765.15.600e-1446.81homing endonuclease rb16 2, partial [Nannochlorops... [more]
XP_005854643.12.800e-1347.19homing endonuclease rb16 2, partial [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002220NSK002220Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00340.1NO14G00340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670907gene_5600Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101200g1gene5720Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00340.1NO14G00340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00340 ID=NO14G00340|Name=NO14G00340|organism=Nannochloropsis oceanica|type=gene|length=3059bp
ATGCCCTTGAAAGAGGAAACACCCGCAGTGCACACACACGGGCTGGGGCA
GCAGGGCAGCGCACCGACCAGGGTTACGGCAACCGTAGCAGACTTTGTGG
CAGCAGGTCCTTCGGGTGCTGGTGGTGGTGGTGACAACAACAACAACGGA
GGGTTTCCCAGCGGACGACGGCGCCCGAAAAAAATCCCCGGCCGTTACTT
AGAAGAAGATGGGAGTGCCGGAAGCGAGGAGGAGCAGAAAGATAGAGGAG
AAGGAGCAGGGCGGCAAGGCCCTGGTGGGAAGGGGGGTGGGAAGAAGGGA
GACAAGAAGCGGAGGCGGGCGGCAGATGTGGCGGCATCTTTAGAAGACGG
CGCTGGAGGGGCTGGGCGCGGTGGGGGGAGCAACAGTAGCAACAATAGTG
TCGACAGCAACAGCAGTGGAGGGAGTAGCATCAAGAGCAAGTTTAAAGAG
CGACACGATTACACGGGGAACCCGGCGCCGCAGCCGCAACCTCCGCCGCC
CCCGCCGCCCCCCTTTCGTCCGCCCGGCATGATGGGGATGACAGGAGGAG
GAGGAGGAGGAGAAGTAGGAAAACCTGGAGGAGGAGGAAGGGGAGGAGGA
GGAGAAGGAGGAAGAGCGGGAGGAGCAGTGGCACCTCAGGGCCCTACTTC
TACGTTCCGCGGAGTCCGATGGAGCAAGCAACAGGGGCGATGGCGCGTTG
ACGTGCACTACAAGGGCAAGGACTTGTTTTTGGCGTATTTCAACGATGAG
ATTGAGGCGGCCAGGGTGTTTGATGACGCGGCCTCAACGCTGTATGAGGA
CGgtgaggaagaagggaggaagggagggagggcaggaagacggctgggat
ggccagaagggtctttgttgacaatttttgcattctccagtcgccaaatt
caaagtttgattcatacacttgtactctattgtgacacgtacctttctct
ctctcccctccttccccctttccctcgtcaacagGGGTACTCCTGAATTT
TCTGCCTGACGGAACGCCAAACCCGGAACGCCGACGAGGGCGACGAGGCA
TCAAAGTCAAgtatgtagtgaaggagggcgggaaggagggtgggagggta
cgatgggagtccggagtttcaaaggcgccagaaccgtggaataagtgact
ctcatgtgctcacccctccctcccttcctccctccctccctccctccctc
cctccttcttaacagAGCCCGCGACCCTCCTCCCCCGTGGGTCGTGGAAA
AGCTGCAGACTCTTGGCCATAACACCACGCTCCTCCCTCCCGGCAGGAAG
CTTTATCCACTTCCCCTTCCTCCTTCTTCCTCCTCCTTCCCCTCCCTGTC
CTCCCACCATCATCATCCTCCTCCTCCTCATCCTCATCATCAGCCTCCTC
AACAACCCCCCTACTCCTCCTTGTATCCTCCTCCCCCCTCCTCCTCCTTC
CCTTCCACCGCCGCGGGCGCTGCTGCCGCTGGTGCTGCTGCTGCTGCTGA
TGCTGCTGCTGCGGGTGCACGCGCCAATGCCATCGCCGCTGCTGGGCGCT
ACATCGGCAGCAGCGGCAGCATCGGAGGGGGAAAAAAGAGAAAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGGAGCTGACGTATCGTGATGATGGTGG
TCGGTCATTTAAACGGACGAGGGGTAAGGAGGAGAAGGAGGAGGAGGTTG
TTGTCAATGGAACCTGGTGGAGGGCAGGGAGCGGGGGAGGGCGAGGAGGA
GGAAGAGGGAGATGGAGGGAAGGGGCAGGGAGGGGAGGAGGTCGTCGTCC
CTGTCAGCAGGGGCACCGGAACAAGCGGCGGCATGGTGACGGTGGGAGCA
GCGGGAGCAGCGGGAGTGACGAGGACGAGGAGGAAGAGGAGGAGCTGGAG
ATCGACATGGACGAGGAGGAGGACGACGACGACGACGACGAGAGGGAGGT
GAAGCACCTCATCCCCCCTCCCCATCCGCACGGCGGCTCTTTCTACCCCT
CCTCCAAACCCAGCACCGGACCATTCGACCCTTCATTTTCCTCCTCCTCC
TCCCGCCGCATCATGCCACCCCCCCTCTCTGCCCCTGGGCTCGGCAAGCA
CCGGGGGAGGGAGCGAGGGAAGGAAGGAGAGGGGGAGGCTGAGGACTTGG
ACGTGCTGAGTGATCGGCACCCACTACACGCTCTGGCCACTCTCTGCAAA
CTGAAGGAAGGACCCGCGCCATGGCCTCCTGCTTCCTCCTCCTCCATGTC
CTCCTCCTCGCCCTCCTCCTCCACCTCCTCCGCTTCCTCCTCCTCCGCGG
CAACTGCTTCCTCCTCCCTACCTGCTGCCAgtggccctcccccctccctc
ccccccgccacctcgtcgtcatcccaatcaattcacagtccatcctgctc
ctgccccctacccctcctccacttcgcaacctccccaccattcctccctc
gtcactcaagCACCCCCCCCTCCCCCGGCAATCGGCCACGATCCGTGCTA
CTCTCACCCTACCCCTGCTCCGGTGTCCACCATTAACCCTGCTCCTCCCC
CTCCTTTCGCTCCTCCTGCTGCACCTGCTCCCGTCCCTCCCTCCCTTTCT
CCCGGCCTCCCACCCAATGATCTGGTGGGGAAAGTTCGTGTCTTTTTGCT
CGAGAAGTGGAAGGGCGGGTGGGGGCAAGACGTGAAGGCGAGTGAATACT
CCCGAGCCGTCGAGCTCCTCGCGCAGgtaagaagggggggaaggagggat
ggatggagggatgggagaaagaccttttggcagtcttttccccgcttttg
gtgctgcttatttttgatatgtaaaatgtctctcaaatttccatggagct
gcgtatctttgatatgtataagtttataggggatgtcgggcgggtgtcat
ccttcctcactcttccctccctccctccctcgttggaatccacagAATAA
TGACCAAGCCCGCCGGTTCCTGGAAGATGTGTCTCCCTCCACACCTCATC
TTGAGACGTTGGCATTAGCTTTCATTGTGGTCATGCGCTGCGGGGCTTTC
CATCAGTGA
back to top

protein sequence of NO14G00340.1

>NO14G00340.1-protein ID=NO14G00340.1-protein|Name=NO14G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=791bp
MPLKEETPAVHTHGLGQQGSAPTRVTATVADFVAAGPSGAGGGGDNNNNG
GFPSGRRRPKKIPGRYLEEDGSAGSEEEQKDRGEGAGRQGPGGKGGGKKG
DKKRRRAADVAASLEDGAGGAGRGGGSNSSNNSVDSNSSGGSSIKSKFKE
RHDYTGNPAPQPQPPPPPPPPFRPPGMMGMTGGGGGGEVGKPGGGGRGGG
GEGGRAGGAVAPQGPTSTFRGVRWSKQQGRWRVDVHYKGKDLFLAYFNDE
IEAARVFDDAASTLYEDGVLLNFLPDGTPNPERRRGRRGIKVKARDPPPP
WVVEKLQTLGHNTTLLPPGRKLYPLPLPPSSSSFPSLSSHHHHPPPPHPH
HQPPQQPPYSSLYPPPPSSSFPSTAAGAAAAGAAAAADAAAAGARANAIA
AAGRYIGSSGSIGGGKKRKQQQQQQQQQQELTYRDDGGRSFKRTRGKEEK
EEEVVVNGTWWRAGSGGGRGGGRGRWREGAGRGGGRRPCQQGHRNKRRHG
DGGSSGSSGSDEDEEEEEELEIDMDEEEDDDDDDEREVKHLIPPPHPHGG
SFYPSSKPSTGPFDPSFSSSSSRRIMPPPLSAPGLGKHRGRERGKEGEGE
AEDLDVLSDRHPLHALATLCKLKEGPAPWPPASSSSMSSSSPSSSTSSAS
SSSAATASSSLPAATPPPPPAIGHDPCYSHPTPAPVSTINPAPPPPFAPP
AAPAPVPPSLSPGLPPNDLVGKVRVFLLEKWKGGWGQDVKASEYSRAVEL
LAQNNDQARRFLEDVSPSTPHLETLALAFIVVMRCGAFHQ*
back to top
Synonyms
Publications