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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr14 | genome | chr14:144366..147424 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G00340.1 vs.
Match: XP_005853500.1 (hypothetical protein NGA_0504500, partial [Nannochloropsis gaditana CCMP526]; EKU22863.1 hypothetical protein NGA_0504500, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 113.2 bits (282), Expect = 3.600e-21 Identity = 73/138 (52.90%), Postives = 92/138 (66.67%), Query Frame = 0
Query: 653 SAATASSSLPAATPPPPPAIGHDPCYSHPTPAPVSTINPAPPPPFAPPAAPA--PVPPSLSPGLPPNDLVGKVRVFLLEKWKGGWGQDVKASEYSRAVELLAQNNDQARRFLEDVSPSTPHLETLALAFIVVMRCGAF 789
S+ SSSL A PPPP+ P S P+ + S P ++ + PA P+PP +P D+ +VR FLLEKWK GWGQDVK E+++AVELL+Q+N AR FLEDV+PSTPH+ETLAL+FIVVMRCGAF
Sbjct: 31 SSLVPSSSLSIACTPPPPSSADPPLSSLPSKSASSL-----PSIYSSTSLPAIQPLPPPSTP-----DITAQVRSFLLEKWKVGWGQDVKGKEFAKAVELLSQDNASARSFLEDVAPSTPHIETLALSFIVVMRCGAF 158
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G00340.1 ID=NO14G00340.1|Name=NO14G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=2373bp ATGCCCTTGAAAGAGGAAACACCCGCAGTGCACACACACGGGCTGGGGCA GCAGGGCAGCGCACCGACCAGGGTTACGGCAACCGTAGCAGACTTTGTGG CAGCAGGTCCTTCGGGTGCTGGTGGTGGTGGTGACAACAACAACAACGGA GGGTTTCCCAGCGGACGACGGCGCCCGAAAAAAATCCCCGGCCGTTACTT AGAAGAAGATGGGAGTGCCGGAAGCGAGGAGGAGCAGAAAGATAGAGGAG AAGGAGCAGGGCGGCAAGGCCCTGGTGGGAAGGGGGGTGGGAAGAAGGGA GACAAGAAGCGGAGGCGGGCGGCAGATGTGGCGGCATCTTTAGAAGACGG CGCTGGAGGGGCTGGGCGCGGTGGGGGGAGCAACAGTAGCAACAATAGTG TCGACAGCAACAGCAGTGGAGGGAGTAGCATCAAGAGCAAGTTTAAAGAG CGACACGATTACACGGGGAACCCGGCGCCGCAGCCGCAACCTCCGCCGCC CCCGCCGCCCCCCTTTCGTCCGCCCGGCATGATGGGGATGACAGGAGGAG GAGGAGGAGGAGAAGTAGGAAAACCTGGAGGAGGAGGAAGGGGAGGAGGA GGAGAAGGAGGAAGAGCGGGAGGAGCAGTGGCACCTCAGGGCCCTACTTC TACGTTCCGCGGAGTCCGATGGAGCAAGCAACAGGGGCGATGGCGCGTTG ACGTGCACTACAAGGGCAAGGACTTGTTTTTGGCGTATTTCAACGATGAG ATTGAGGCGGCCAGGGTGTTTGATGACGCGGCCTCAACGCTGTATGAGGA CGGGGTACTCCTGAATTTTCTGCCTGACGGAACGCCAAACCCGGAACGCC GACGAGGGCGACGAGGCATCAAAGTCAAAGCCCGCGACCCTCCTCCCCCG TGGGTCGTGGAAAAGCTGCAGACTCTTGGCCATAACACCACGCTCCTCCC TCCCGGCAGGAAGCTTTATCCACTTCCCCTTCCTCCTTCTTCCTCCTCCT TCCCCTCCCTGTCCTCCCACCATCATCATCCTCCTCCTCCTCATCCTCAT CATCAGCCTCCTCAACAACCCCCCTACTCCTCCTTGTATCCTCCTCCCCC CTCCTCCTCCTTCCCTTCCACCGCCGCGGGCGCTGCTGCCGCTGGTGCTG CTGCTGCTGCTGATGCTGCTGCTGCGGGTGCACGCGCCAATGCCATCGCC GCTGCTGGGCGCTACATCGGCAGCAGCGGCAGCATCGGAGGGGGAAAAAA GAGAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCTGACGTATC GTGATGATGGTGGTCGGTCATTTAAACGGACGAGGGGTAAGGAGGAGAAG GAGGAGGAGGTTGTTGTCAATGGAACCTGGTGGAGGGCAGGGAGCGGGGG AGGGCGAGGAGGAGGAAGAGGGAGATGGAGGGAAGGGGCAGGGAGGGGAG GAGGTCGTCGTCCCTGTCAGCAGGGGCACCGGAACAAGCGGCGGCATGGT GACGGTGGGAGCAGCGGGAGCAGCGGGAGTGACGAGGACGAGGAGGAAGA GGAGGAGCTGGAGATCGACATGGACGAGGAGGAGGACGACGACGACGACG ACGAGAGGGAGGTGAAGCACCTCATCCCCCCTCCCCATCCGCACGGCGGC TCTTTCTACCCCTCCTCCAAACCCAGCACCGGACCATTCGACCCTTCATT TTCCTCCTCCTCCTCCCGCCGCATCATGCCACCCCCCCTCTCTGCCCCTG GGCTCGGCAAGCACCGGGGGAGGGAGCGAGGGAAGGAAGGAGAGGGGGAG GCTGAGGACTTGGACGTGCTGAGTGATCGGCACCCACTACACGCTCTGGC CACTCTCTGCAAACTGAAGGAAGGACCCGCGCCATGGCCTCCTGCTTCCT CCTCCTCCATGTCCTCCTCCTCGCCCTCCTCCTCCACCTCCTCCGCTTCC TCCTCCTCCGCGGCAACTGCTTCCTCCTCCCTACCTGCTGCCACACCCCC CCCTCCCCCGGCAATCGGCCACGATCCGTGCTACTCTCACCCTACCCCTG CTCCGGTGTCCACCATTAACCCTGCTCCTCCCCCTCCTTTCGCTCCTCCT GCTGCACCTGCTCCCGTCCCTCCCTCCCTTTCTCCCGGCCTCCCACCCAA TGATCTGGTGGGGAAAGTTCGTGTCTTTTTGCTCGAGAAGTGGAAGGGCG GGTGGGGGCAAGACGTGAAGGCGAGTGAATACTCCCGAGCCGTCGAGCTC CTCGCGCAGAATAATGACCAAGCCCGCCGGTTCCTGGAAGATGTGTCTCC CTCCACACCTCATCTTGAGACGTTGGCATTAGCTTTCATTGTGGTCATGC GCTGCGGGGCTTTCCATCAGTGA back to topprotein sequence of NO14G00340.1 >NO14G00340.1-protein ID=NO14G00340.1-protein|Name=NO14G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=791bp MPLKEETPAVHTHGLGQQGSAPTRVTATVADFVAAGPSGAGGGGDNNNNG GFPSGRRRPKKIPGRYLEEDGSAGSEEEQKDRGEGAGRQGPGGKGGGKKG DKKRRRAADVAASLEDGAGGAGRGGGSNSSNNSVDSNSSGGSSIKSKFKE RHDYTGNPAPQPQPPPPPPPPFRPPGMMGMTGGGGGGEVGKPGGGGRGGG GEGGRAGGAVAPQGPTSTFRGVRWSKQQGRWRVDVHYKGKDLFLAYFNDE IEAARVFDDAASTLYEDGVLLNFLPDGTPNPERRRGRRGIKVKARDPPPP WVVEKLQTLGHNTTLLPPGRKLYPLPLPPSSSSFPSLSSHHHHPPPPHPH HQPPQQPPYSSLYPPPPSSSFPSTAAGAAAAGAAAAADAAAAGARANAIA AAGRYIGSSGSIGGGKKRKQQQQQQQQQQELTYRDDGGRSFKRTRGKEEK EEEVVVNGTWWRAGSGGGRGGGRGRWREGAGRGGGRRPCQQGHRNKRRHG DGGSSGSSGSDEDEEEEEELEIDMDEEEDDDDDDEREVKHLIPPPHPHGG SFYPSSKPSTGPFDPSFSSSSSRRIMPPPLSAPGLGKHRGRERGKEGEGE AEDLDVLSDRHPLHALATLCKLKEGPAPWPPASSSSMSSSSPSSSTSSAS SSSAATASSSLPAATPPPPPAIGHDPCYSHPTPAPVSTINPAPPPPFAPP AAPAPVPPSLSPGLPPNDLVGKVRVFLLEKWKGGWGQDVKASEYSRAVEL LAQNNDQARRFLEDVSPSTPHLETLALAFIVVMRCGAFHQ* back to topmRNA from alignment at chr14:144366..147424+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G00340.1 ID=NO14G00340.1|Name=NO14G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=3059bp|location=Sequence derived from alignment at chr14:144366..147424+ (Nannochloropsis oceanica) ATGCCCTTGAAAGAGGAAACACCCGCAGTGCACACACACGGGCTGGGGCA
GCAGGGCAGCGCACCGACCAGGGTTACGGCAACCGTAGCAGACTTTGTGG
CAGCAGGTCCTTCGGGTGCTGGTGGTGGTGGTGACAACAACAACAACGGA
GGGTTTCCCAGCGGACGACGGCGCCCGAAAAAAATCCCCGGCCGTTACTT
AGAAGAAGATGGGAGTGCCGGAAGCGAGGAGGAGCAGAAAGATAGAGGAG
AAGGAGCAGGGCGGCAAGGCCCTGGTGGGAAGGGGGGTGGGAAGAAGGGA
GACAAGAAGCGGAGGCGGGCGGCAGATGTGGCGGCATCTTTAGAAGACGG
CGCTGGAGGGGCTGGGCGCGGTGGGGGGAGCAACAGTAGCAACAATAGTG
TCGACAGCAACAGCAGTGGAGGGAGTAGCATCAAGAGCAAGTTTAAAGAG
CGACACGATTACACGGGGAACCCGGCGCCGCAGCCGCAACCTCCGCCGCC
CCCGCCGCCCCCCTTTCGTCCGCCCGGCATGATGGGGATGACAGGAGGAG
GAGGAGGAGGAGAAGTAGGAAAACCTGGAGGAGGAGGAAGGGGAGGAGGA
GGAGAAGGAGGAAGAGCGGGAGGAGCAGTGGCACCTCAGGGCCCTACTTC
TACGTTCCGCGGAGTCCGATGGAGCAAGCAACAGGGGCGATGGCGCGTTG
ACGTGCACTACAAGGGCAAGGACTTGTTTTTGGCGTATTTCAACGATGAG
ATTGAGGCGGCCAGGGTGTTTGATGACGCGGCCTCAACGCTGTATGAGGA
CGGTGAGGAAGAAGGGAGGAAGGGAGGGAGGGCAGGAAGACGGCTGGGAT
GGCCAGAAGGGTCTTTGTTGACAATTTTTGCATTCTCCAGTCGCCAAATT
CAAAGTTTGATTCATACACTTGTACTCTATTGTGACACGTACCTTTCTCT
CTCTCCCCTCCTTCCCCCTTTCCCTCGTCAACAGGGGTACTCCTGAATTT
TCTGCCTGACGGAACGCCAAACCCGGAACGCCGACGAGGGCGACGAGGCA
TCAAAGTCAAGTATGTAGTGAAGGAGGGCGGGAAGGAGGGTGGGAGGGTA
CGATGGGAGTCCGGAGTTTCAAAGGCGCCAGAACCGTGGAATAAGTGACT
CTCATGTGCTCACCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCTTCTTAACAGAGCCCGCGACCCTCCTCCCCCGTGGGTCGTGGAAA
AGCTGCAGACTCTTGGCCATAACACCACGCTCCTCCCTCCCGGCAGGAAG
CTTTATCCACTTCCCCTTCCTCCTTCTTCCTCCTCCTTCCCCTCCCTGTC
CTCCCACCATCATCATCCTCCTCCTCCTCATCCTCATCATCAGCCTCCTC
AACAACCCCCCTACTCCTCCTTGTATCCTCCTCCCCCCTCCTCCTCCTTC
CCTTCCACCGCCGCGGGCGCTGCTGCCGCTGGTGCTGCTGCTGCTGCTGA
TGCTGCTGCTGCGGGTGCACGCGCCAATGCCATCGCCGCTGCTGGGCGCT
ACATCGGCAGCAGCGGCAGCATCGGAGGGGGAAAAAAGAGAAAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGGAGCTGACGTATCGTGATGATGGTGG
TCGGTCATTTAAACGGACGAGGGGTAAGGAGGAGAAGGAGGAGGAGGTTG
TTGTCAATGGAACCTGGTGGAGGGCAGGGAGCGGGGGAGGGCGAGGAGGA
GGAAGAGGGAGATGGAGGGAAGGGGCAGGGAGGGGAGGAGGTCGTCGTCC
CTGTCAGCAGGGGCACCGGAACAAGCGGCGGCATGGTGACGGTGGGAGCA
GCGGGAGCAGCGGGAGTGACGAGGACGAGGAGGAAGAGGAGGAGCTGGAG
ATCGACATGGACGAGGAGGAGGACGACGACGACGACGACGAGAGGGAGGT
GAAGCACCTCATCCCCCCTCCCCATCCGCACGGCGGCTCTTTCTACCCCT
CCTCCAAACCCAGCACCGGACCATTCGACCCTTCATTTTCCTCCTCCTCC
TCCCGCCGCATCATGCCACCCCCCCTCTCTGCCCCTGGGCTCGGCAAGCA
CCGGGGGAGGGAGCGAGGGAAGGAAGGAGAGGGGGAGGCTGAGGACTTGG
ACGTGCTGAGTGATCGGCACCCACTACACGCTCTGGCCACTCTCTGCAAA
CTGAAGGAAGGACCCGCGCCATGGCCTCCTGCTTCCTCCTCCTCCATGTC
CTCCTCCTCGCCCTCCTCCTCCACCTCCTCCGCTTCCTCCTCCTCCGCGG
CAACTGCTTCCTCCTCCCTACCTGCTGCCAGTGGCCCTCCCCCCTCCCTC
CCCCCCGCCACCTCGTCGTCATCCCAATCAATTCACAGTCCATCCTGCTC
CTGCCCCCTACCCCTCCTCCACTTCGCAACCTCCCCACCATTCCTCCCTC
GTCACTCAAGCACCCCCCCCTCCCCCGGCAATCGGCCACGATCCGTGCTA
CTCTCACCCTACCCCTGCTCCGGTGTCCACCATTAACCCTGCTCCTCCCC
CTCCTTTCGCTCCTCCTGCTGCACCTGCTCCCGTCCCTCCCTCCCTTTCT
CCCGGCCTCCCACCCAATGATCTGGTGGGGAAAGTTCGTGTCTTTTTGCT
CGAGAAGTGGAAGGGCGGGTGGGGGCAAGACGTGAAGGCGAGTGAATACT
CCCGAGCCGTCGAGCTCCTCGCGCAGGTAAGAAGGGGGGGAAGGAGGGAT
GGATGGAGGGATGGGAGAAAGACCTTTTGGCAGTCTTTTCCCCGCTTTTG
GTGCTGCTTATTTTTGATATGTAAAATGTCTCTCAAATTTCCATGGAGCT
GCGTATCTTTGATATGTATAAGTTTATAGGGGATGTCGGGCGGGTGTCAT
CCTTCCTCACTCTTCCCTCCCTCCCTCCCTCGTTGGAATCCACAGAATAA
TGACCAAGCCCGCCGGTTCCTGGAAGATGTGTCTCCCTCCACACCTCATC
TTGAGACGTTGGCATTAGCTTTCATTGTGGTCATGCGCTGCGGGGCTTTC
CATCAGTGA back to topCoding sequence (CDS) from alignment at chr14:144366..147424+ >NO14G00340.1 ID=NO14G00340.1|Name=NO14G00340.1|organism=Nannochloropsis oceanica|type=CDS|length=2373bp|location=Sequence derived from alignment at chr14:144366..147424+ (Nannochloropsis oceanica) ATGCCCTTGAAAGAGGAAACACCCGCAGTGCACACACACGGGCTGGGGCA GCAGGGCAGCGCACCGACCAGGGTTACGGCAACCGTAGCAGACTTTGTGG CAGCAGGTCCTTCGGGTGCTGGTGGTGGTGGTGACAACAACAACAACGGA GGGTTTCCCAGCGGACGACGGCGCCCGAAAAAAATCCCCGGCCGTTACTT AGAAGAAGATGGGAGTGCCGGAAGCGAGGAGGAGCAGAAAGATAGAGGAG AAGGAGCAGGGCGGCAAGGCCCTGGTGGGAAGGGGGGTGGGAAGAAGGGA GACAAGAAGCGGAGGCGGGCGGCAGATGTGGCGGCATCTTTAGAAGACGG CGCTGGAGGGGCTGGGCGCGGTGGGGGGAGCAACAGTAGCAACAATAGTG TCGACAGCAACAGCAGTGGAGGGAGTAGCATCAAGAGCAAGTTTAAAGAG CGACACGATTACACGGGGAACCCGGCGCCGCAGCCGCAACCTCCGCCGCC CCCGCCGCCCCCCTTTCGTCCGCCCGGCATGATGGGGATGACAGGAGGAG GAGGAGGAGGAGAAGTAGGAAAACCTGGAGGAGGAGGAAGGGGAGGAGGA GGAGAAGGAGGAAGAGCGGGAGGAGCAGTGGCACCTCAGGGCCCTACTTC TACGTTCCGCGGAGTCCGATGGAGCAAGCAACAGGGGCGATGGCGCGTTG ACGTGCACTACAAGGGCAAGGACTTGTTTTTGGCGTATTTCAACGATGAG ATTGAGGCGGCCAGGGTGTTTGATGACGCGGCCTCAACGCTGTATGAGGA CGGGGTACTCCTGAATTTTCTGCCTGACGGAACGCCAAACCCGGAACGCC GACGAGGGCGACGAGGCATCAAAGTCAAAGCCCGCGACCCTCCTCCCCCG TGGGTCGTGGAAAAGCTGCAGACTCTTGGCCATAACACCACGCTCCTCCC TCCCGGCAGGAAGCTTTATCCACTTCCCCTTCCTCCTTCTTCCTCCTCCT TCCCCTCCCTGTCCTCCCACCATCATCATCCTCCTCCTCCTCATCCTCAT CATCAGCCTCCTCAACAACCCCCCTACTCCTCCTTGTATCCTCCTCCCCC CTCCTCCTCCTTCCCTTCCACCGCCGCGGGCGCTGCTGCCGCTGGTGCTG CTGCTGCTGCTGATGCTGCTGCTGCGGGTGCACGCGCCAATGCCATCGCC GCTGCTGGGCGCTACATCGGCAGCAGCGGCAGCATCGGAGGGGGAAAAAA GAGAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCTGACGTATC GTGATGATGGTGGTCGGTCATTTAAACGGACGAGGGGTAAGGAGGAGAAG GAGGAGGAGGTTGTTGTCAATGGAACCTGGTGGAGGGCAGGGAGCGGGGG AGGGCGAGGAGGAGGAAGAGGGAGATGGAGGGAAGGGGCAGGGAGGGGAG GAGGTCGTCGTCCCTGTCAGCAGGGGCACCGGAACAAGCGGCGGCATGGT GACGGTGGGAGCAGCGGGAGCAGCGGGAGTGACGAGGACGAGGAGGAAGA GGAGGAGCTGGAGATCGACATGGACGAGGAGGAGGACGACGACGACGACG ACGAGAGGGAGGTGAAGCACCTCATCCCCCCTCCCCATCCGCACGGCGGC TCTTTCTACCCCTCCTCCAAACCCAGCACCGGACCATTCGACCCTTCATT TTCCTCCTCCTCCTCCCGCCGCATCATGCCACCCCCCCTCTCTGCCCCTG GGCTCGGCAAGCACCGGGGGAGGGAGCGAGGGAAGGAAGGAGAGGGGGAG GCTGAGGACTTGGACGTGCTGAGTGATCGGCACCCACTACACGCTCTGGC CACTCTCTGCAAACTGAAGGAAGGACCCGCGCCATGGCCTCCTGCTTCCT CCTCCTCCATGTCCTCCTCCTCGCCCTCCTCCTCCACCTCCTCCGCTTCC TCCTCCTCCGCGGCAACTGCTTCCTCCTCCCTACCTGCTGCCACACCCCC CCCTCCCCCGGCAATCGGCCACGATCCGTGCTACTCTCACCCTACCCCTG CTCCGGTGTCCACCATTAACCCTGCTCCTCCCCCTCCTTTCGCTCCTCCT GCTGCACCTGCTCCCGTCCCTCCCTCCCTTTCTCCCGGCCTCCCACCCAA TGATCTGGTGGGGAAAGTTCGTGTCTTTTTGCTCGAGAAGTGGAAGGGCG GGTGGGGGCAAGACGTGAAGGCGAGTGAATACTCCCGAGCCGTCGAGCTC CTCGCGCAGAATAATGACCAAGCCCGCCGGTTCCTGGAAGATGTGTCTCC CTCCACACCTCATCTTGAGACGTTGGCATTAGCTTTCATTGTGGTCATGC GCTGCGGGGCTTTCCATCAGTGA back to top
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