NO14G00340.1, NO14G00340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00340.1
Unique NameNO14G00340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2373
Alignment locationchr14:144366..147424 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:144366..147424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO14G00340.1 vs.
Match: XP_005853500.1 (hypothetical protein NGA_0504500, partial [Nannochloropsis gaditana CCMP526]; EKU22863.1 hypothetical protein NGA_0504500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 113.2 bits (282), Expect = 3.600e-21
Identity = 73/138 (52.90%), Postives = 92/138 (66.67%), Query Frame = 0
Query:  653 SAATASSSLPAATPPPPPAIGHDPCYSHPTPAPVSTINPAPPPPFAPPAAPA--PVPPSLSPGLPPNDLVGKVRVFLLEKWKGGWGQDVKASEYSRAVELLAQNNDQARRFLEDVSPSTPHLETLALAFIVVMRCGAF 789
            S+   SSSL  A  PPPP+    P  S P+ +  S      P  ++  + PA  P+PP  +P     D+  +VR FLLEKWK GWGQDVK  E+++AVELL+Q+N  AR FLEDV+PSTPH+ETLAL+FIVVMRCGAF
Sbjct:   31 SSLVPSSSLSIACTPPPPSSADPPLSSLPSKSASSL-----PSIYSSTSLPAIQPLPPPSTP-----DITAQVRSFLLEKWKVGWGQDVKGKEFAKAVELLSQDNASARSFLEDVAPSTPHIETLALSFIVVMRCGAF 158          
The following BLAST results are available for this feature:
BLAST of NO14G00340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853500.13.600e-2152.90hypothetical protein NGA_0504500, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00340NO14G00340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00340.1NO14G00340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00340.1.cds1NO14G00340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00340.1.cds2NO14G00340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00340.1.cds3NO14G00340.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00340.1.cds4NO14G00340.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00340.1.cds5NO14G00340.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00340.1 ID=NO14G00340.1|Name=NO14G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=2373bp
ATGCCCTTGAAAGAGGAAACACCCGCAGTGCACACACACGGGCTGGGGCA
GCAGGGCAGCGCACCGACCAGGGTTACGGCAACCGTAGCAGACTTTGTGG
CAGCAGGTCCTTCGGGTGCTGGTGGTGGTGGTGACAACAACAACAACGGA
GGGTTTCCCAGCGGACGACGGCGCCCGAAAAAAATCCCCGGCCGTTACTT
AGAAGAAGATGGGAGTGCCGGAAGCGAGGAGGAGCAGAAAGATAGAGGAG
AAGGAGCAGGGCGGCAAGGCCCTGGTGGGAAGGGGGGTGGGAAGAAGGGA
GACAAGAAGCGGAGGCGGGCGGCAGATGTGGCGGCATCTTTAGAAGACGG
CGCTGGAGGGGCTGGGCGCGGTGGGGGGAGCAACAGTAGCAACAATAGTG
TCGACAGCAACAGCAGTGGAGGGAGTAGCATCAAGAGCAAGTTTAAAGAG
CGACACGATTACACGGGGAACCCGGCGCCGCAGCCGCAACCTCCGCCGCC
CCCGCCGCCCCCCTTTCGTCCGCCCGGCATGATGGGGATGACAGGAGGAG
GAGGAGGAGGAGAAGTAGGAAAACCTGGAGGAGGAGGAAGGGGAGGAGGA
GGAGAAGGAGGAAGAGCGGGAGGAGCAGTGGCACCTCAGGGCCCTACTTC
TACGTTCCGCGGAGTCCGATGGAGCAAGCAACAGGGGCGATGGCGCGTTG
ACGTGCACTACAAGGGCAAGGACTTGTTTTTGGCGTATTTCAACGATGAG
ATTGAGGCGGCCAGGGTGTTTGATGACGCGGCCTCAACGCTGTATGAGGA
CGGGGTACTCCTGAATTTTCTGCCTGACGGAACGCCAAACCCGGAACGCC
GACGAGGGCGACGAGGCATCAAAGTCAAAGCCCGCGACCCTCCTCCCCCG
TGGGTCGTGGAAAAGCTGCAGACTCTTGGCCATAACACCACGCTCCTCCC
TCCCGGCAGGAAGCTTTATCCACTTCCCCTTCCTCCTTCTTCCTCCTCCT
TCCCCTCCCTGTCCTCCCACCATCATCATCCTCCTCCTCCTCATCCTCAT
CATCAGCCTCCTCAACAACCCCCCTACTCCTCCTTGTATCCTCCTCCCCC
CTCCTCCTCCTTCCCTTCCACCGCCGCGGGCGCTGCTGCCGCTGGTGCTG
CTGCTGCTGCTGATGCTGCTGCTGCGGGTGCACGCGCCAATGCCATCGCC
GCTGCTGGGCGCTACATCGGCAGCAGCGGCAGCATCGGAGGGGGAAAAAA
GAGAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCTGACGTATC
GTGATGATGGTGGTCGGTCATTTAAACGGACGAGGGGTAAGGAGGAGAAG
GAGGAGGAGGTTGTTGTCAATGGAACCTGGTGGAGGGCAGGGAGCGGGGG
AGGGCGAGGAGGAGGAAGAGGGAGATGGAGGGAAGGGGCAGGGAGGGGAG
GAGGTCGTCGTCCCTGTCAGCAGGGGCACCGGAACAAGCGGCGGCATGGT
GACGGTGGGAGCAGCGGGAGCAGCGGGAGTGACGAGGACGAGGAGGAAGA
GGAGGAGCTGGAGATCGACATGGACGAGGAGGAGGACGACGACGACGACG
ACGAGAGGGAGGTGAAGCACCTCATCCCCCCTCCCCATCCGCACGGCGGC
TCTTTCTACCCCTCCTCCAAACCCAGCACCGGACCATTCGACCCTTCATT
TTCCTCCTCCTCCTCCCGCCGCATCATGCCACCCCCCCTCTCTGCCCCTG
GGCTCGGCAAGCACCGGGGGAGGGAGCGAGGGAAGGAAGGAGAGGGGGAG
GCTGAGGACTTGGACGTGCTGAGTGATCGGCACCCACTACACGCTCTGGC
CACTCTCTGCAAACTGAAGGAAGGACCCGCGCCATGGCCTCCTGCTTCCT
CCTCCTCCATGTCCTCCTCCTCGCCCTCCTCCTCCACCTCCTCCGCTTCC
TCCTCCTCCGCGGCAACTGCTTCCTCCTCCCTACCTGCTGCCACACCCCC
CCCTCCCCCGGCAATCGGCCACGATCCGTGCTACTCTCACCCTACCCCTG
CTCCGGTGTCCACCATTAACCCTGCTCCTCCCCCTCCTTTCGCTCCTCCT
GCTGCACCTGCTCCCGTCCCTCCCTCCCTTTCTCCCGGCCTCCCACCCAA
TGATCTGGTGGGGAAAGTTCGTGTCTTTTTGCTCGAGAAGTGGAAGGGCG
GGTGGGGGCAAGACGTGAAGGCGAGTGAATACTCCCGAGCCGTCGAGCTC
CTCGCGCAGAATAATGACCAAGCCCGCCGGTTCCTGGAAGATGTGTCTCC
CTCCACACCTCATCTTGAGACGTTGGCATTAGCTTTCATTGTGGTCATGC
GCTGCGGGGCTTTCCATCAGTGA
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protein sequence of NO14G00340.1

>NO14G00340.1-protein ID=NO14G00340.1-protein|Name=NO14G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=791bp
MPLKEETPAVHTHGLGQQGSAPTRVTATVADFVAAGPSGAGGGGDNNNNG
GFPSGRRRPKKIPGRYLEEDGSAGSEEEQKDRGEGAGRQGPGGKGGGKKG
DKKRRRAADVAASLEDGAGGAGRGGGSNSSNNSVDSNSSGGSSIKSKFKE
RHDYTGNPAPQPQPPPPPPPPFRPPGMMGMTGGGGGGEVGKPGGGGRGGG
GEGGRAGGAVAPQGPTSTFRGVRWSKQQGRWRVDVHYKGKDLFLAYFNDE
IEAARVFDDAASTLYEDGVLLNFLPDGTPNPERRRGRRGIKVKARDPPPP
WVVEKLQTLGHNTTLLPPGRKLYPLPLPPSSSSFPSLSSHHHHPPPPHPH
HQPPQQPPYSSLYPPPPSSSFPSTAAGAAAAGAAAAADAAAAGARANAIA
AAGRYIGSSGSIGGGKKRKQQQQQQQQQQELTYRDDGGRSFKRTRGKEEK
EEEVVVNGTWWRAGSGGGRGGGRGRWREGAGRGGGRRPCQQGHRNKRRHG
DGGSSGSSGSDEDEEEEEELEIDMDEEEDDDDDDEREVKHLIPPPHPHGG
SFYPSSKPSTGPFDPSFSSSSSRRIMPPPLSAPGLGKHRGRERGKEGEGE
AEDLDVLSDRHPLHALATLCKLKEGPAPWPPASSSSMSSSSPSSSTSSAS
SSSAATASSSLPAATPPPPPAIGHDPCYSHPTPAPVSTINPAPPPPFAPP
AAPAPVPPSLSPGLPPNDLVGKVRVFLLEKWKGGWGQDVKASEYSRAVEL
LAQNNDQARRFLEDVSPSTPHLETLALAFIVVMRCGAFHQ*
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mRNA from alignment at chr14:144366..147424+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00340.1 ID=NO14G00340.1|Name=NO14G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=3059bp|location=Sequence derived from alignment at chr14:144366..147424+ (Nannochloropsis oceanica)
ATGCCCTTGAAAGAGGAAACACCCGCAGTGCACACACACGGGCTGGGGCA GCAGGGCAGCGCACCGACCAGGGTTACGGCAACCGTAGCAGACTTTGTGG CAGCAGGTCCTTCGGGTGCTGGTGGTGGTGGTGACAACAACAACAACGGA GGGTTTCCCAGCGGACGACGGCGCCCGAAAAAAATCCCCGGCCGTTACTT AGAAGAAGATGGGAGTGCCGGAAGCGAGGAGGAGCAGAAAGATAGAGGAG AAGGAGCAGGGCGGCAAGGCCCTGGTGGGAAGGGGGGTGGGAAGAAGGGA GACAAGAAGCGGAGGCGGGCGGCAGATGTGGCGGCATCTTTAGAAGACGG CGCTGGAGGGGCTGGGCGCGGTGGGGGGAGCAACAGTAGCAACAATAGTG TCGACAGCAACAGCAGTGGAGGGAGTAGCATCAAGAGCAAGTTTAAAGAG CGACACGATTACACGGGGAACCCGGCGCCGCAGCCGCAACCTCCGCCGCC CCCGCCGCCCCCCTTTCGTCCGCCCGGCATGATGGGGATGACAGGAGGAG GAGGAGGAGGAGAAGTAGGAAAACCTGGAGGAGGAGGAAGGGGAGGAGGA GGAGAAGGAGGAAGAGCGGGAGGAGCAGTGGCACCTCAGGGCCCTACTTC TACGTTCCGCGGAGTCCGATGGAGCAAGCAACAGGGGCGATGGCGCGTTG ACGTGCACTACAAGGGCAAGGACTTGTTTTTGGCGTATTTCAACGATGAG ATTGAGGCGGCCAGGGTGTTTGATGACGCGGCCTCAACGCTGTATGAGGA CGGTGAGGAAGAAGGGAGGAAGGGAGGGAGGGCAGGAAGACGGCTGGGAT GGCCAGAAGGGTCTTTGTTGACAATTTTTGCATTCTCCAGTCGCCAAATT CAAAGTTTGATTCATACACTTGTACTCTATTGTGACACGTACCTTTCTCT CTCTCCCCTCCTTCCCCCTTTCCCTCGTCAACAGGGGTACTCCTGAATTT TCTGCCTGACGGAACGCCAAACCCGGAACGCCGACGAGGGCGACGAGGCA TCAAAGTCAAGTATGTAGTGAAGGAGGGCGGGAAGGAGGGTGGGAGGGTA CGATGGGAGTCCGGAGTTTCAAAGGCGCCAGAACCGTGGAATAAGTGACT CTCATGTGCTCACCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTC CCTCCTTCTTAACAGAGCCCGCGACCCTCCTCCCCCGTGGGTCGTGGAAA AGCTGCAGACTCTTGGCCATAACACCACGCTCCTCCCTCCCGGCAGGAAG CTTTATCCACTTCCCCTTCCTCCTTCTTCCTCCTCCTTCCCCTCCCTGTC CTCCCACCATCATCATCCTCCTCCTCCTCATCCTCATCATCAGCCTCCTC AACAACCCCCCTACTCCTCCTTGTATCCTCCTCCCCCCTCCTCCTCCTTC CCTTCCACCGCCGCGGGCGCTGCTGCCGCTGGTGCTGCTGCTGCTGCTGA TGCTGCTGCTGCGGGTGCACGCGCCAATGCCATCGCCGCTGCTGGGCGCT ACATCGGCAGCAGCGGCAGCATCGGAGGGGGAAAAAAGAGAAAGCAGCAG CAGCAGCAGCAGCAGCAGCAGCAGGAGCTGACGTATCGTGATGATGGTGG TCGGTCATTTAAACGGACGAGGGGTAAGGAGGAGAAGGAGGAGGAGGTTG TTGTCAATGGAACCTGGTGGAGGGCAGGGAGCGGGGGAGGGCGAGGAGGA GGAAGAGGGAGATGGAGGGAAGGGGCAGGGAGGGGAGGAGGTCGTCGTCC CTGTCAGCAGGGGCACCGGAACAAGCGGCGGCATGGTGACGGTGGGAGCA GCGGGAGCAGCGGGAGTGACGAGGACGAGGAGGAAGAGGAGGAGCTGGAG ATCGACATGGACGAGGAGGAGGACGACGACGACGACGACGAGAGGGAGGT GAAGCACCTCATCCCCCCTCCCCATCCGCACGGCGGCTCTTTCTACCCCT CCTCCAAACCCAGCACCGGACCATTCGACCCTTCATTTTCCTCCTCCTCC TCCCGCCGCATCATGCCACCCCCCCTCTCTGCCCCTGGGCTCGGCAAGCA CCGGGGGAGGGAGCGAGGGAAGGAAGGAGAGGGGGAGGCTGAGGACTTGG ACGTGCTGAGTGATCGGCACCCACTACACGCTCTGGCCACTCTCTGCAAA CTGAAGGAAGGACCCGCGCCATGGCCTCCTGCTTCCTCCTCCTCCATGTC CTCCTCCTCGCCCTCCTCCTCCACCTCCTCCGCTTCCTCCTCCTCCGCGG CAACTGCTTCCTCCTCCCTACCTGCTGCCAGTGGCCCTCCCCCCTCCCTC CCCCCCGCCACCTCGTCGTCATCCCAATCAATTCACAGTCCATCCTGCTC CTGCCCCCTACCCCTCCTCCACTTCGCAACCTCCCCACCATTCCTCCCTC GTCACTCAAGCACCCCCCCCTCCCCCGGCAATCGGCCACGATCCGTGCTA CTCTCACCCTACCCCTGCTCCGGTGTCCACCATTAACCCTGCTCCTCCCC CTCCTTTCGCTCCTCCTGCTGCACCTGCTCCCGTCCCTCCCTCCCTTTCT CCCGGCCTCCCACCCAATGATCTGGTGGGGAAAGTTCGTGTCTTTTTGCT CGAGAAGTGGAAGGGCGGGTGGGGGCAAGACGTGAAGGCGAGTGAATACT CCCGAGCCGTCGAGCTCCTCGCGCAGGTAAGAAGGGGGGGAAGGAGGGAT GGATGGAGGGATGGGAGAAAGACCTTTTGGCAGTCTTTTCCCCGCTTTTG GTGCTGCTTATTTTTGATATGTAAAATGTCTCTCAAATTTCCATGGAGCT GCGTATCTTTGATATGTATAAGTTTATAGGGGATGTCGGGCGGGTGTCAT CCTTCCTCACTCTTCCCTCCCTCCCTCCCTCGTTGGAATCCACAGAATAA TGACCAAGCCCGCCGGTTCCTGGAAGATGTGTCTCCCTCCACACCTCATC TTGAGACGTTGGCATTAGCTTTCATTGTGGTCATGCGCTGCGGGGCTTTC CATCAGTGA
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Coding sequence (CDS) from alignment at chr14:144366..147424+

>NO14G00340.1 ID=NO14G00340.1|Name=NO14G00340.1|organism=Nannochloropsis oceanica|type=CDS|length=2373bp|location=Sequence derived from alignment at chr14:144366..147424+ (Nannochloropsis oceanica)
ATGCCCTTGAAAGAGGAAACACCCGCAGTGCACACACACGGGCTGGGGCA
GCAGGGCAGCGCACCGACCAGGGTTACGGCAACCGTAGCAGACTTTGTGG
CAGCAGGTCCTTCGGGTGCTGGTGGTGGTGGTGACAACAACAACAACGGA
GGGTTTCCCAGCGGACGACGGCGCCCGAAAAAAATCCCCGGCCGTTACTT
AGAAGAAGATGGGAGTGCCGGAAGCGAGGAGGAGCAGAAAGATAGAGGAG
AAGGAGCAGGGCGGCAAGGCCCTGGTGGGAAGGGGGGTGGGAAGAAGGGA
GACAAGAAGCGGAGGCGGGCGGCAGATGTGGCGGCATCTTTAGAAGACGG
CGCTGGAGGGGCTGGGCGCGGTGGGGGGAGCAACAGTAGCAACAATAGTG
TCGACAGCAACAGCAGTGGAGGGAGTAGCATCAAGAGCAAGTTTAAAGAG
CGACACGATTACACGGGGAACCCGGCGCCGCAGCCGCAACCTCCGCCGCC
CCCGCCGCCCCCCTTTCGTCCGCCCGGCATGATGGGGATGACAGGAGGAG
GAGGAGGAGGAGAAGTAGGAAAACCTGGAGGAGGAGGAAGGGGAGGAGGA
GGAGAAGGAGGAAGAGCGGGAGGAGCAGTGGCACCTCAGGGCCCTACTTC
TACGTTCCGCGGAGTCCGATGGAGCAAGCAACAGGGGCGATGGCGCGTTG
ACGTGCACTACAAGGGCAAGGACTTGTTTTTGGCGTATTTCAACGATGAG
ATTGAGGCGGCCAGGGTGTTTGATGACGCGGCCTCAACGCTGTATGAGGA
CGGGGTACTCCTGAATTTTCTGCCTGACGGAACGCCAAACCCGGAACGCC
GACGAGGGCGACGAGGCATCAAAGTCAAAGCCCGCGACCCTCCTCCCCCG
TGGGTCGTGGAAAAGCTGCAGACTCTTGGCCATAACACCACGCTCCTCCC
TCCCGGCAGGAAGCTTTATCCACTTCCCCTTCCTCCTTCTTCCTCCTCCT
TCCCCTCCCTGTCCTCCCACCATCATCATCCTCCTCCTCCTCATCCTCAT
CATCAGCCTCCTCAACAACCCCCCTACTCCTCCTTGTATCCTCCTCCCCC
CTCCTCCTCCTTCCCTTCCACCGCCGCGGGCGCTGCTGCCGCTGGTGCTG
CTGCTGCTGCTGATGCTGCTGCTGCGGGTGCACGCGCCAATGCCATCGCC
GCTGCTGGGCGCTACATCGGCAGCAGCGGCAGCATCGGAGGGGGAAAAAA
GAGAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCTGACGTATC
GTGATGATGGTGGTCGGTCATTTAAACGGACGAGGGGTAAGGAGGAGAAG
GAGGAGGAGGTTGTTGTCAATGGAACCTGGTGGAGGGCAGGGAGCGGGGG
AGGGCGAGGAGGAGGAAGAGGGAGATGGAGGGAAGGGGCAGGGAGGGGAG
GAGGTCGTCGTCCCTGTCAGCAGGGGCACCGGAACAAGCGGCGGCATGGT
GACGGTGGGAGCAGCGGGAGCAGCGGGAGTGACGAGGACGAGGAGGAAGA
GGAGGAGCTGGAGATCGACATGGACGAGGAGGAGGACGACGACGACGACG
ACGAGAGGGAGGTGAAGCACCTCATCCCCCCTCCCCATCCGCACGGCGGC
TCTTTCTACCCCTCCTCCAAACCCAGCACCGGACCATTCGACCCTTCATT
TTCCTCCTCCTCCTCCCGCCGCATCATGCCACCCCCCCTCTCTGCCCCTG
GGCTCGGCAAGCACCGGGGGAGGGAGCGAGGGAAGGAAGGAGAGGGGGAG
GCTGAGGACTTGGACGTGCTGAGTGATCGGCACCCACTACACGCTCTGGC
CACTCTCTGCAAACTGAAGGAAGGACCCGCGCCATGGCCTCCTGCTTCCT
CCTCCTCCATGTCCTCCTCCTCGCCCTCCTCCTCCACCTCCTCCGCTTCC
TCCTCCTCCGCGGCAACTGCTTCCTCCTCCCTACCTGCTGCCACACCCCC
CCCTCCCCCGGCAATCGGCCACGATCCGTGCTACTCTCACCCTACCCCTG
CTCCGGTGTCCACCATTAACCCTGCTCCTCCCCCTCCTTTCGCTCCTCCT
GCTGCACCTGCTCCCGTCCCTCCCTCCCTTTCTCCCGGCCTCCCACCCAA
TGATCTGGTGGGGAAAGTTCGTGTCTTTTTGCTCGAGAAGTGGAAGGGCG
GGTGGGGGCAAGACGTGAAGGCGAGTGAATACTCCCGAGCCGTCGAGCTC
CTCGCGCAGAATAATGACCAAGCCCGCCGGTTCCTGGAAGATGTGTCTCC
CTCCACACCTCATCTTGAGACGTTGGCATTAGCTTTCATTGTGGTCATGC
GCTGCGGGGCTTTCCATCAGTGA
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Synonyms
Publications