NO14G00190, NO14G00190 (gene) Nannochloropsis oceanica

Overview
NameNO14G00190
Unique NameNO14G00190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1764
Alignment locationchr14:71112..72875 +

Link to JBrowse

Properties
Property NameValue
DescriptionNucleolar protein 12
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:71112..72875 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019186Nucleolar_protein_12
Homology
BLAST of NO14G00190 vs. NCBI_GenBank
Match: EWM24780.1 (Nucleolar protein 12 [Nannochloropsis gaditana])

HSP 1 Score: 217.2 bits (552), Expect = 5.700e-53
Identity = 121/195 (62.05%), Postives = 146/195 (74.87%), Query Frame = 0
Query:   44 LSLVFDPEARREYLTGFSKRKTERRKFGLAMQKVKDRKARLLEREEIRKAKQDAWDELPASVKEADEMAFG---RKGXXXXXXXXXXXXXXXXXQYTTSTFGESVMVTTFLGIPSTGEEGEEEEGGGEVLAMVRGERKGDGVDREQLHAGSVARFKKILTGNMPAKTKRKGGREGTRENISGSYMPKGKGKGEDE 236
            L+LVFDPEARREYLTGFSKRK ERR FGLAMQ+VK+RKARL+EREE+RKAK+ A D+LPAS+K A+    G     G                 ++TT+TFGESV+VTT  GIPS    G+EE+  G VLAMVR ERKG GVD+EQL AGSVA FKK++ G MPAK K+KGG+E T++N SGSYMPKGKG+GE++
Sbjct:   42 LALVFDPEARREYLTGFSKRKKERRTFGLAMQQVKNRKARLMEREELRKAKKGALDDLPASIKGAEPYLSGTALANGKEKETMETKAKEEVYDDRFTTATFGESVLVTTSFGIPS----GDEEDEEGGVLAMVREERKGGGVDKEQLQAGSVAHFKKLVAGKMPAKPKKKGGKERTKQNTSGSYMPKGKGQGEED 232          
BLAST of NO14G00190 vs. NCBI_GenBank
Match: XP_005855822.1 (rrna processing protein rrp17, partial [Nannochloropsis gaditana CCMP526] >EKU20538.1 rrna processing protein rrp17, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 99.8 bits (247), Expect = 1.300e-17
Identity = 51/63 (80.95%), Postives = 59/63 (93.65%), Query Frame = 0
Query:   44 LSLVFDPEARREYLTGFSKRKTERRKFGLAMQKVKDRKARLLEREEIRKAKQDAWDELPASVK 107
            L+LVFDPEARREYLTGFSKRK ERR FGLAMQ+VK+RKARL+EREE+RKAK+ A D+LPAS+K
Sbjct:   69 LALVFDPEARREYLTGFSKRKKERRTFGLAMQQVKNRKARLMEREELRKAKKGALDDLPASIK 131          
BLAST of NO14G00190 vs. NCBI_GenBank
Match: XP_002288568.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94004.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 79.7 bits (195), Expect = 1.400e-11
Identity = 65/192 (33.85%), Postives = 95/192 (49.48%), Query Frame = 0
Query:   38 LLNKRGLSLVFDPEARREYLTGFSKRKTERRKFGLAMQKVKDRKARLLEREEIRKAKQDAWDELPASVKEADEMAFG-----------RKGXXXXXXXXXXXXXXXXXQYTTSTFGESVMVTTFLGIPSTGEEGEEEEGGGEVLAMVRGERKGDG-VDREQLHAGSVARFKKILTGNMPAKTK--RKGGREG 216
            L  ++ + + FD   R EYLTGFS RK ERR FGLAMQKVKDR+A+L ER++ R+A+ +  +E+  + +E  +   G            +                  + TT  FG  V VTT  GIPS   + E+++      A    E+ G   VD  Q  AG V  +   + G M +K K  ++GG++G
Sbjct:   37 LPQRKKVEITFDKSNREEYLTGFSTRKKERRAFGLAMQKVKDRQAKLEERKDNREAQLEKVEEIERNKEELRKGVAGEDDSXXXAGSYEEQASSAPQHNEKEMHTFQDERTTHQFGGLVSVTTTFGIPS---DDEDDDVINSKRAFYEREQHGSSHVDTAQKRAGDVQNYIASVKGTMGSKKKNAKQGGKKG 225          
BLAST of NO14G00190 vs. NCBI_GenBank
Match: EJK56126.1 (hypothetical protein THAOC_24044 [Thalassiosira oceanica])

HSP 1 Score: 71.2 bits (173), Expect = 5.100e-9
Identity = 81/202 (40.10%), Postives = 111/202 (54.95%), Query Frame = 0
Query:   42 RGLSLVFDPEARREYLTGFSKRKTERRKFGLAMQKVKDRKARLLEREEIRKAKQDAWDELPASVKEAD-------EMAFGRKGXXXXXXXXXXXXXXXXXQYTTSTFGESVMVTTFLGIPSTGEEGEEEEGGGEVLAMVRGERKGDGVDREQLHAGSVARFKKILTGNMPAKTK--RKGGREGTRENISGSYMPKGKGKGED 235
            R + + F+PE RR YLTG S RK ERR FGLAMQKVKDR+A++ ER+E R+A+ +  +++  + K          E     + XXXXXXXXXXXXXXXXX  T S FG  V VTT  G+P   +   ++          R     + VD  Q  AG+V  +   + G+M ++ K  + GGR+GT     G+   KG G   +
Sbjct:   33 RKVEISFNPEDRRGYLTGLSARKKERRAFGLAMQKVKDRQAKIEERKEQRQAQLEKIEDIERNKKALRRGQDGEVEAGSDAEXXXXXXXXXXXXXXXXXXXQTRSQFGGLVSVTTTYGMPEDDDSVTDDRHD----FYSRETHDSNHVDEAQKQAGNVNSYIAKVKGSMGSRKKHQKSGGRKGTH----GASTMKGMGNANE 226          
BLAST of NO14G00190 vs. NCBI_GenBank
Match: XP_002181812.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47026.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 68.6 bits (166), Expect = 3.300e-8
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 0
Query:   40 NKRGLSLVFDPEARREYLTGFSKRKTERRKFGLAMQKVKDRKARLLEREEIRKAKQDAWDE 101
            N+ G  +VFDP+AR+ YL GFS RK ERR +GLAMQKVKDRKA+L +R E++KA  +  +E
Sbjct:   15 NRGGEEIVFDPQARQAYLQGFSTRKRERRVYGLAMQKVKDRKAKLEQRAEMKKAVLEQIEE 75          
BLAST of NO14G00190 vs. NCBI_GenBank
Match: OQR86439.1 (hypothetical protein ACHHYP_10536 [Achlya hypogyna])

HSP 1 Score: 65.5 bits (158), Expect = 2.800e-7
Identity = 64/201 (31.84%), Postives = 100/201 (49.75%), Query Frame = 0
Query:   41 KRGLSLVFDPEARREYLTGFSKRKTERRKFGLAMQKVKDRKARLLEREEIRKAKQDAWDELPASVKEADEMAFGRKGXXXXXXXXXXXXXXXXXQYTTSTFGESVMVTTFLG-IPSTGEEGEEEEGGGEVLAMVRGERKGDGVDREQLHAGSVARFKKILTGNMPAK-TKRKGGREGTRENI-SGSYM---PKGKGKGEDE 236
            K  L + FD + R++YLTGFSKRK ERR+FG  M+  K +KA L+E+ +IRKA+Q    E    V +  ++A  +                    +T   FG  V VTT +G + S  E+   EE   ++LA +  +++    D++      +   +K L   +P+K +K K  RE    N   G+ +    KGKG G+D+
Sbjct:   10 KSKLVVTFDADKRKDYLTGFSKRKQERRRFGHDMEAFKKQKA-LIEQRKIRKAEQKKLLESLPEVADVKQVAEDK----------DKEVMSFDDAHTQDKFGNVVTVTTMVGDLKSDSEDELSEEENEQLLAHLAKKKERASRDKQMTLFQRIQHKRKGLA--LPSKRSKMKAARENAARNKGKGAKVVAPKKGKGAGDDD 197          
The following BLAST results are available for this feature:
BLAST of NO14G00190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM24780.15.700e-5362.05Nucleolar protein 12 [Nannochloropsis gaditana][more]
XP_005855822.11.300e-1780.95rrna processing protein rrp17, partial [Nannochlor... [more]
XP_002288568.11.400e-1133.85predicted protein [Thalassiosira pseudonana CCMP13... [more]
EJK56126.15.100e-940.10hypothetical protein THAOC_24044 [Thalassiosira oc... [more]
XP_002181812.13.300e-859.02predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OQR86439.12.800e-731.84hypothetical protein ACHHYP_10536 [Achlya hypogyna... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00190.1NO14G00190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555403gene_5588Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100446g3gene5705Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00190.1NO14G00190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00190 ID=NO14G00190|Name=NO14G00190|organism=Nannochloropsis oceanica|type=gene|length=1764bp
GCATTATGGGCCTACGGGTGGTATGGGGGAACGGTGGGCTAGTTTGCGTT
GGTCCCAAAAATCTGCGGCGACACGTGCATGACCACAGACACATCCAGGA
CGATTTCGGGGCCTTTTCCACTCTAAAAAAGTTCCCGTGAGCCTCGGTAA
GGCATATGGGTGTGCTTCATGTGCCTTTTGCTTTTTACAGGGTTTGCTCT
GCTTCTCCAACCCTGGAGTGTTGTTCCAGGGTCGTTCCAGAGTCATTCCT
GTGACATCCATCTATATTGTCTTATGTCCATCAAAACGAGGCCTCCCTGG
GCGACGGAGGGAATGCCGGCCATTGATTTTTTCGCTTGACGAAGAAAAAT
CCAACCATAAACAAGCCGCGCCCTTGGCAGCCGGTCACACAGAAGCGATG
AAGCTCAAGCTCCGGAGAAACGCCTCAGCTGATGGTGGGATGCAGGATAT
ACGGTGGTATTATCCATGCGTTACTACCACCTATACATGCGACACACCCG
TTGCATATTACAGTCACGATGAGATGAAAAGCTTCACTCTGTCAGAGAAA
GACTAAGGGCCTGGCCAGGCTTTGCCTCCCTCGCCTTCCCTTCCTGCCTG
GAGCTTCCAACCTCCCCATGATAATCACCACCCAATCACCCAAATCAAAG
TGAAATTCCACAATACCACAGCTATAAGAGGAGCCAAAGCTCATCATTAC
CACGTGCTCCACCTTACGATCCTCCCTCGTTTACCCTTTGCCTCCTTCTC
TGCTTTGCTCAACCACCGGCGCACCTCTTCCCTGCGAGGCACGAAGAGAT
AATCATGCCCCCCCGCAGCAGCAGCGCTAGCACTAGCAGCCCTTCCTCAC
CTTCCACGCGCCGTAAACAGCAACACTCGCAGCATCATAAGCAAAGGCAA
ACAGGTAAGCACGTACTCTTGAACAAACGAGGGCTCTCTCTGGTCTTCGA
CCCGGAAGCCCGCCGGGAGTACTTGACTGGCTTTAGCAAGCGCAAGACTG
AGCGGCGGAAGTTCGGTCTGGCGATGCAAAAAGTGAAGGACCGAAAGGCC
CGTTTATTGGAGAGGGAAGAAATCCGCAAGGCCAAGCAAGACGCTTGGGA
TGAGCTTCCGGCGTCAGTGAAGGAGGCGGATGAGATGGCATTCGGGAGGA
AAGGGGGAGGGGGGGAAAGGGGGGAGGAAGTAGTGGAAGAGGTGGTGTAC
GATGACCAATACACAACGTCTACATTTGGGGAGTCGGTGATGGTGACGAC
GTTTTTGGGCATCCCCTCCACGGGGGAGGAGGGGGAGGAGGAGGAGGGCG
GAGGGGAGGTGTTGGCCATGGTGCGGGGTGAGAGGAAGGGGGATGGCGTG
GACAGGGAGCAACTACACGCGGGCTCGGTGGCTCGATTCAAGAAGATATT
GACGGGGAATATGCCGGCGAAGACGAAGAGGAAGGGAGGGAGAGAGGGGA
CAAGGGAGAACATCTCGGGGTCGTACATGCCTAAGGGCAAAGGGAAGGGC
GAGGATGAGGGTGGGGGAGGTGGGAAGAGGGGGAAAAAGGGGAAGAAGGG
AAAGAAAGGAAGGCGGTGAATGTGTTGATGGAGTCGTTGGTCATGCATGT
ACATAAATTATTTTTAAGGAAAGAGAAATAAAAATCGACAAAGAAAGTAG
ACAAGTCGCGTGGGATGTGTTCAGGAAAGGAACCGAAGGGCGGAAACAAC
GGGTAGAAAGATAAGGGGAAAGAAAGGTTGGGCTGGCAAGGTAAATAGCT
CTGTTGTATTGGAA
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protein sequence of NO14G00190.1

>NO14G00190.1-protein ID=NO14G00190.1-protein|Name=NO14G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MPPRSSSASTSSPSSPSTRRKQQHSQHHKQRQTGKHVLLNKRGLSLVFDP
EARREYLTGFSKRKTERRKFGLAMQKVKDRKARLLEREEIRKAKQDAWDE
LPASVKEADEMAFGRKGGGGERGEEVVEEVVYDDQYTTSTFGESVMVTTF
LGIPSTGEEGEEEEGGGEVLAMVRGERKGDGVDREQLHAGSVARFKKILT
GNMPAKTKRKGGREGTRENISGSYMPKGKGKGEDEGGGGGKRGKKGKKGK
KGRR*
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Synonyms
Publications