NO14G00190.1, NO14G00190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00190.1
Unique NameNO14G00190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1764
Alignment locationchr14:71112..72875 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:71112..72875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00190.1 vs.
Match: EWM24780.1 (Nucleolar protein 12 [Nannochloropsis gaditana])

HSP 1 Score: 227.6 bits (579), Expect = 4.200e-56
Identity = 145/254 (57.09%), Postives = 180/254 (70.87%), Query Frame = 0 
Query:    2 PPRSSSASTSSPSSPSTRRKQQHSQHHKQRQTGKHVLLNKRG-LSLVFDPEARREYLTGFSKRKTERRKFGLAMQKVKDRKARLLEREEIRKAKQDAWDELPASVKEADEMAFGRKGGGGERGEEV---VEEVVYDDQYTTSTFGESVMVTTFLGIPSTGEEGEEEEGGGEVLAMVRGERKGDGVDREQLHAGSVARFKKILTGNMPAKTKRKGGREGTRENISGSYMPKGKGKGEDEGGGGGKRGKKGKKGKK 252
            PP   + S +    P+T+ + Q   H + +  G      K G L+LVFDPEARREYLTGFSKRK ERR FGLAMQ+VK+RKARL+EREE+RKAK+ A D+LPAS+K A+    G     G+  E +    +E VYDD++TT+TFGESV+VTT  GIPS  EE EE    G VLAMVR ERKG GVD+EQL AGSVA FKK++ G MPAK K+KGG+E T++N SGSYMPKGKG+GE++     K GKK K+GK+
Sbjct:    3 PPSPRNGSNTERQCPTTKTQGQRHTHARLKIGG----YKKNGKLALVFDPEARREYLTGFSKRKKERRTFGLAMQQVKNRKARLMEREELRKAKKGALDDLPASIKGAEPYLSGTALANGKEKETMETKAKEEVYDDRFTTATFGESVLVTTSFGIPSGDEEDEE----GGVLAMVREERKGGGVDKEQLQAGSVAHFKKLVAGKMPAKPKKKGGKERTKQNTSGSYMPKGKGQGEED----KKTGKKKKRGKR 244
The following BLAST results are available for this feature:
BLAST of NO14G00190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24780.14.200e-5657.09Nucleolar protein 12 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00190NO14G00190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00190.1NO14G00190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00190.1.cds1NO14G00190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00190.1 ID=NO14G00190.1|Name=NO14G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1764bp
GCATTATGGGCCTACGGGTGGTATGGGGGAACGGTGGGCTAGTTTGCGTT
GGTCCCAAAAATCTGCGGCGACACGTGCATGACCACAGACACATCCAGGA
CGATTTCGGGGCCTTTTCCACTCTAAAAAAGTTCCCGTGAGCCTCGGTAA
GGCATATGGGTGTGCTTCATGTGCCTTTTGCTTTTTACAGGGTTTGCTCT
GCTTCTCCAACCCTGGAGTGTTGTTCCAGGGTCGTTCCAGAGTCATTCCT
GTGACATCCATCTATATTGTCTTATGTCCATCAAAACGAGGCCTCCCTGG
GCGACGGAGGGAATGCCGGCCATTGATTTTTTCGCTTGACGAAGAAAAAT
CCAACCATAAACAAGCCGCGCCCTTGGCAGCCGGTCACACAGAAGCGATG
AAGCTCAAGCTCCGGAGAAACGCCTCAGCTGATGGTGGGATGCAGGATAT
ACGGTGGTATTATCCATGCGTTACTACCACCTATACATGCGACACACCCG
TTGCATATTACAGTCACGATGAGATGAAAAGCTTCACTCTGTCAGAGAAA
GACTAAGGGCCTGGCCAGGCTTTGCCTCCCTCGCCTTCCCTTCCTGCCTG
GAGCTTCCAACCTCCCCATGATAATCACCACCCAATCACCCAAATCAAAG
TGAAATTCCACAATACCACAGCTATAAGAGGAGCCAAAGCTCATCATTAC
CACGTGCTCCACCTTACGATCCTCCCTCGTTTACCCTTTGCCTCCTTCTC
TGCTTTGCTCAACCACCGGCGCACCTCTTCCCTGCGAGGCACGAAGAGAT
AATCATGCCCCCCCGCAGCAGCAGCGCTAGCACTAGCAGCCCTTCCTCAC
CTTCCACGCGCCGTAAACAGCAACACTCGCAGCATCATAAGCAAAGGCAA
ACAGGTAAGCACGTACTCTTGAACAAACGAGGGCTCTCTCTGGTCTTCGA
CCCGGAAGCCCGCCGGGAGTACTTGACTGGCTTTAGCAAGCGCAAGACTG
AGCGGCGGAAGTTCGGTCTGGCGATGCAAAAAGTGAAGGACCGAAAGGCC
CGTTTATTGGAGAGGGAAGAAATCCGCAAGGCCAAGCAAGACGCTTGGGA
TGAGCTTCCGGCGTCAGTGAAGGAGGCGGATGAGATGGCATTCGGGAGGA
AAGGGGGAGGGGGGGAAAGGGGGGAGGAAGTAGTGGAAGAGGTGGTGTAC
GATGACCAATACACAACGTCTACATTTGGGGAGTCGGTGATGGTGACGAC
GTTTTTGGGCATCCCCTCCACGGGGGAGGAGGGGGAGGAGGAGGAGGGCG
GAGGGGAGGTGTTGGCCATGGTGCGGGGTGAGAGGAAGGGGGATGGCGTG
GACAGGGAGCAACTACACGCGGGCTCGGTGGCTCGATTCAAGAAGATATT
GACGGGGAATATGCCGGCGAAGACGAAGAGGAAGGGAGGGAGAGAGGGGA
CAAGGGAGAACATCTCGGGGTCGTACATGCCTAAGGGCAAAGGGAAGGGC
GAGGATGAGGGTGGGGGAGGTGGGAAGAGGGGGAAAAAGGGGAAGAAGGG
AAAGAAAGGAAGGCGGTGAATGTGTTGATGGAGTCGTTGGTCATGCATGT
ACATAAATTATTTTTAAGGAAAGAGAAATAAAAATCGACAAAGAAAGTAG
ACAAGTCGCGTGGGATGTGTTCAGGAAAGGAACCGAAGGGCGGAAACAAC
GGGTAGAAAGATAAGGGGAAAGAAAGGTTGGGCTGGCAAGGTAAATAGCT
CTGTTGTATTGGAA
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protein sequence of NO14G00190.1

>NO14G00190.1-protein ID=NO14G00190.1-protein|Name=NO14G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MPPRSSSASTSSPSSPSTRRKQQHSQHHKQRQTGKHVLLNKRGLSLVFDP
EARREYLTGFSKRKTERRKFGLAMQKVKDRKARLLEREEIRKAKQDAWDE
LPASVKEADEMAFGRKGGGGERGEEVVEEVVYDDQYTTSTFGESVMVTTF
LGIPSTGEEGEEEEGGGEVLAMVRGERKGDGVDREQLHAGSVARFKKILT
GNMPAKTKRKGGREGTRENISGSYMPKGKGKGEDEGGGGGKRGKKGKKGK
KGRR*
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mRNA from alignment at chr14:71112..72875+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00190.1 ID=NO14G00190.1|Name=NO14G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1764bp|location=Sequence derived from alignment at chr14:71112..72875+ (Nannochloropsis oceanica)
GCATTATGGGCCTACGGGTGGTATGGGGGAACGGTGGGCTAGTTTGCGTT
GGTCCCAAAAATCTGCGGCGACACGTGCATGACCACAGACACATCCAGGA
CGATTTCGGGGCCTTTTCCACTCTAAAAAAGTTCCCGTGAGCCTCGGTAA
GGCATATGGGTGTGCTTCATGTGCCTTTTGCTTTTTACAGGGTTTGCTCT
GCTTCTCCAACCCTGGAGTGTTGTTCCAGGGTCGTTCCAGAGTCATTCCT
GTGACATCCATCTATATTGTCTTATGTCCATCAAAACGAGGCCTCCCTGG
GCGACGGAGGGAATGCCGGCCATTGATTTTTTCGCTTGACGAAGAAAAAT
CCAACCATAAACAAGCCGCGCCCTTGGCAGCCGGTCACACAGAAGCGATG
AAGCTCAAGCTCCGGAGAAACGCCTCAGCTGATGGTGGGATGCAGGATAT
ACGGTGGTATTATCCATGCGTTACTACCACCTATACATGCGACACACCCG
TTGCATATTACAGTCACGATGAGATGAAAAGCTTCACTCTGTCAGAGAAA
GACTAAGGGCCTGGCCAGGCTTTGCCTCCCTCGCCTTCCCTTCCTGCCTG
GAGCTTCCAACCTCCCCATGATAATCACCACCCAATCACCCAAATCAAAG
TGAAATTCCACAATACCACAGCTATAAGAGGAGCCAAAGCTCATCATTAC
CACGTGCTCCACCTTACGATCCTCCCTCGTTTACCCTTTGCCTCCTTCTC
TGCTTTGCTCAACCACCGGCGCACCTCTTCCCTGCGAGGCACGAAGAGAT
AATCATGCCCCCCCGCAGCAGCAGCGCTAGCACTAGCAGCCCTTCCTCAC
CTTCCACGCGCCGTAAACAGCAACACTCGCAGCATCATAAGCAAAGGCAA
ACAGGTAAGCACGTACTCTTGAACAAACGAGGGCTCTCTCTGGTCTTCGA
CCCGGAAGCCCGCCGGGAGTACTTGACTGGCTTTAGCAAGCGCAAGACTG
AGCGGCGGAAGTTCGGTCTGGCGATGCAAAAAGTGAAGGACCGAAAGGCC
CGTTTATTGGAGAGGGAAGAAATCCGCAAGGCCAAGCAAGACGCTTGGGA
TGAGCTTCCGGCGTCAGTGAAGGAGGCGGATGAGATGGCATTCGGGAGGA
AAGGGGGAGGGGGGGAAAGGGGGGAGGAAGTAGTGGAAGAGGTGGTGTAC
GATGACCAATACACAACGTCTACATTTGGGGAGTCGGTGATGGTGACGAC
GTTTTTGGGCATCCCCTCCACGGGGGAGGAGGGGGAGGAGGAGGAGGGCG
GAGGGGAGGTGTTGGCCATGGTGCGGGGTGAGAGGAAGGGGGATGGCGTG
GACAGGGAGCAACTACACGCGGGCTCGGTGGCTCGATTCAAGAAGATATT
GACGGGGAATATGCCGGCGAAGACGAAGAGGAAGGGAGGGAGAGAGGGGA
CAAGGGAGAACATCTCGGGGTCGTACATGCCTAAGGGCAAAGGGAAGGGC
GAGGATGAGGGTGGGGGAGGTGGGAAGAGGGGGAAAAAGGGGAAGAAGGG
AAAGAAAGGAAGGCGGTGAATGTGTTGATGGAGTCGTTGGTCATGCATGT
ACATAAATTATTTTTAAGGAAAGAGAAATAAAAATCGACAAAGAAAGTAG
ACAAGTCGCGTGGGATGTGTTCAGGAAAGGAACCGAAGGGCGGAAACAAC
GGGTAGAAAGATAAGGGGAAAGAAAGGTTGGGCTGGCAAGGTAAATAGCT
CTGTTGTATTGGAA
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Coding sequence (CDS) from alignment at chr14:71112..72875+

>NO14G00190.1 ID=NO14G00190.1|Name=NO14G00190.1|organism=Nannochloropsis oceanica|type=CDS|length=765bp|location=Sequence derived from alignment at chr14:71112..72875+ (Nannochloropsis oceanica)
ATGCCCCCCCGCAGCAGCAGCGCTAGCACTAGCAGCCCTTCCTCACCTTC
CACGCGCCGTAAACAGCAACACTCGCAGCATCATAAGCAAAGGCAAACAG
GTAAGCACGTACTCTTGAACAAACGAGGGCTCTCTCTGGTCTTCGACCCG
GAAGCCCGCCGGGAGTACTTGACTGGCTTTAGCAAGCGCAAGACTGAGCG
GCGGAAGTTCGGTCTGGCGATGCAAAAAGTGAAGGACCGAAAGGCCCGTT
TATTGGAGAGGGAAGAAATCCGCAAGGCCAAGCAAGACGCTTGGGATGAG
CTTCCGGCGTCAGTGAAGGAGGCGGATGAGATGGCATTCGGGAGGAAAGG
GGGAGGGGGGGAAAGGGGGGAGGAAGTAGTGGAAGAGGTGGTGTACGATG
ACCAATACACAACGTCTACATTTGGGGAGTCGGTGATGGTGACGACGTTT
TTGGGCATCCCCTCCACGGGGGAGGAGGGGGAGGAGGAGGAGGGCGGAGG
GGAGGTGTTGGCCATGGTGCGGGGTGAGAGGAAGGGGGATGGCGTGGACA
GGGAGCAACTACACGCGGGCTCGGTGGCTCGATTCAAGAAGATATTGACG
GGGAATATGCCGGCGAAGACGAAGAGGAAGGGAGGGAGAGAGGGGACAAG
GGAGAACATCTCGGGGTCGTACATGCCTAAGGGCAAAGGGAAGGGCGAGG
ATGAGGGTGGGGGAGGTGGGAAGAGGGGGAAAAAGGGGAAGAAGGGAAAG
AAAGGAAGGCGGTGA
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Synonyms
Publications