NO14G00140, NO14G00140 (gene) Nannochloropsis oceanica

Overview
NameNO14G00140
Unique NameNO14G00140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3244
Alignment locationchr14:45921..49164 -

Link to JBrowse

Properties
Property NameValue
DescriptionSCF ubiquitin ligase complex protein SKP1b
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:45921..49164 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036296SKP1-like_dim_sf
IPR011333BTB/POZ_fold
IPR016073Skp1_comp_POZ
IPR016072Skp1_comp_dimer
Homology
BLAST of NO14G00140 vs. NCBI_GenBank
Match: XP_009033202.1 (hypothetical protein AURANDRAFT_58667 [Aureococcus anophagefferens] >EGB12114.1 hypothetical protein AURANDRAFT_58667 [Aureococcus anophagefferens])

HSP 1 Score: 114.4 bits (285), Expect = 4.200e-22
Identity = 59/135 (43.70%), Postives = 90/135 (66.67%), Query Frame = 0
Query:   34 VDARILLPSDLLKSMLPESLSEIEDDFQVPLQGVDKAVLEKVIEFLQLYHADPMCKIEKPLNKPKLEDLVQPQYVEYINALHYKIVFQIIDAANFLGIEPLLSLSLAWVAFVLKGPTVEEFKKLFTIHNDFTPEE 169
            V+ ++   S+L+K+M+PE   E E+  ++PL  V   VL KVIEF + Y  +PM +IEKPL    + ++VQ  Y  Y++ +  +++F++I AAN++ I+PLL L+ A VA ++KG T EE +K F I NDFTPEE
Sbjct:   10 VEVKVAKMSELVKTMIPEEADEEEEAQEIPLPNVKSHVLAKVIEFCRRYAEEPMSEIEKPLKSANMHEVVQEWYANYVD-VDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRKTFNIVNDFTPEE 143          
BLAST of NO14G00140 vs. NCBI_GenBank
Match: XP_002294707.1 (hypothetical protein THAPSDRAFT_38460, partial [Thalassiosira pseudonana CCMP1335] >EED88067.1 hypothetical protein THAPSDRAFT_38460, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 111.7 bits (278), Expect = 2.700e-21
Identity = 57/136 (41.91%), Postives = 90/136 (66.18%), Query Frame = 0
Query:   33 PVDARILLPSDLLKSMLPESLSEIEDDFQVPLQGVDKAVLEKVIEFLQLYHADPMCKIEKPLNKPKLEDLVQPQYVEYINALHYKIVFQIIDAANFLGIEPLLSLSLAWVAFVLKGPTVEEFKKLFTIHNDFTPEE 169
            PVD  +   S+L+K ML +   + E+  ++PL  V   VL+KVIEF + + ++PM +IEKPL    + ++VQ  Y +++N +   ++F++I AAN++ I+PLL L+ A VA ++KG T EE +K F I NDF+PEE
Sbjct:    8 PVDIEVARMSELVKGMLEDDADDDEEATEIPLPNVKSTVLKKVIEFCKHHRSEPMTEIEKPLKSAAMAEVVQKWYADFVN-VEQVLLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRKTFNIANDFSPEE 142          
BLAST of NO14G00140 vs. NCBI_GenBank
Match: EWM24786.1 (glycoprotein fp21 [Nannochloropsis gaditana])

HSP 1 Score: 111.3 bits (277), Expect = 3.600e-21
Identity = 61/139 (43.88%), Postives = 89/139 (64.03%), Query Frame = 0
Query:   30 LDEPVDARILLPSDLLKSMLPESLSEIEDDFQVPLQGVDKAVLEKVIEFLQLYHADPMCKIEKPLNKPKLEDLVQPQYVEYINALHYKIVFQIIDAANFLGIEPLLSLSLAWVAFVLKGPTVEEFKKLFTIHNDFTPEE 169
            LD PV+A +LLPS LL  ML       ED+  + L  V+K   E V+ FL+++ A P+  I KP+ +  L ++VQ +Y E+I +L Y+ + Q+++ A+FL ++PLL LSLA V F+LK   +EEFK+LF   ND T EE
Sbjct:   13 LDAPVEAALLLPSTLLAGMLEAEEDCGEDERTLELPSVEKTAFEYVMRFLRVHAATPLQDIPKPILENSLGEIVQKEYSEFIESLPYRDLVQVMELAHFLVLDPLLRLSLARVHFILKATPLEEFKRLFLFQNDLTQEE 151          
BLAST of NO14G00140 vs. NCBI_GenBank
Match: CBJ48672.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 109.8 bits (273), Expect = 1.000e-20
Identity = 66/170 (38.82%), Postives = 102/170 (60.00%), Query Frame = 0
Query:    1 MEKSSEMVNEKEGEGAPQKFVTLQARDGALDEPVDARILLP--SDLLKSMLPESLSEIEDDFQVPLQGVDKAVLEKVIEFLQLYHADPMCKIEKPLNKPKLEDLVQPQYVEYINALHYKIVFQIIDAANFLGIEPLLSLSLAWVAFVLKGPTVEEFKKLFTIHNDFTPEE 169
            +E+ S+  +    E    + V L +++G   E  D ++ +   S+L+K+M+ E   E  D  ++PL  V  +VL KVIEF   Y  DPM +IEKPL    + D+VQ  Y +++  +  + +F++I AAN++ I+PLL L+ A VA ++KG T EE +K F I NDFTPEE
Sbjct:    4 LEEKSQAADAPADETEDTRSVHLVSQEG---ESFDIKVSVAKMSNLVKTMIDEDAEEDGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLKSANMHDVVQEWYAKFVE-VQQETLFELILAANYMDIKPLLDLTCATVASMIKGKTAEEIRKTFNIVNDFTPEE 169          
BLAST of NO14G00140 vs. NCBI_GenBank
Match: GAX21881.1 (S-phase kinase-associated protein 1 [Fistulifera solaris] >GAX13788.1 S-phase kinase-associated protein 1 [Fistulifera solaris])

HSP 1 Score: 107.1 bits (266), Expect = 6.700e-20
Identity = 62/149 (41.61%), Postives = 96/149 (64.43%), Query Frame = 0
Query:   21 VTLQARDGALDEPVDARILLPSDLLKSMLPESLSEIED-DFQVPLQGVDKAVLEKVIEFLQLYHADPMCKIEKPLNKPKLEDLVQPQYVEYINALHYKIVFQIIDAANFLGIEPLLSLSLAWVAFVLKGPTVEEFKKLFTIHNDFTPEE 169
            V L ++DG    PV   +   S+L++SM+ E  +E E+   ++PL  V   VL+KVIEF Q + A+PM +IEKPL   K+ D+VQ  Y +++  L   ++F++I AAN++ I+PLL L+ A VA ++KG + E+ +  F I NDF+PEE
Sbjct:    8 VNLISKDGD-SFPVSIGVAKMSELVRSMMDEDENEDENSSMEIPLPNVKSEVLQKVIEFCQHHLAEPMNEIEKPLKSQKMSDVVQKWYADFVE-LEQVLLFELILAANYMDIKPLLDLTCATVASMIKGKSPEDIRATFNITNDFSPEE 154          
BLAST of NO14G00140 vs. NCBI_GenBank
Match: EWM25403.1 (glycoprotein fp21 [Nannochloropsis gaditana])

HSP 1 Score: 105.9 bits (263), Expect = 1.500e-19
Identity = 61/150 (40.67%), Postives = 95/150 (63.33%), Query Frame = 0
Query:   19 KFVTLQARDGALDEPVDARILLPSDLLKSMLPESLSEIEDDFQVPLQGVDKAVLEKVIEFLQLYHADPMCKIEKPLNKPKLEDLVQPQYVEYINALHYKIVFQIIDAANFLGIEPLLSLSLAWVAFVLKGPTVEEFKKLFTIHNDFTPEE 169
            K V L +++G   E V+  +   S+L+K+MLP+   +  +  ++PL  V   VL KVIEF + +  DPM  IEKPL    + ++VQ  Y  ++N +  +++F++I AAN++ I+PLL L+ A VA ++KG T EE ++ F I NDFTPEE
Sbjct:   60 KVVHLVSQEGDQYE-VEVSVCKMSELVKTMLPDD-DDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVN-VDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEE 206          
BLAST of NO14G00140 vs. NCBI_GenBank
Match: XP_002176583.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51046.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 101.3 bits (251), Expect = 3.700e-18
Identity = 57/148 (38.51%), Postives = 91/148 (61.49%), Query Frame = 0
Query:   21 VTLQARDGALDEPVDARILLPSDLLKSMLPESLSEIEDDFQVPLQGVDKAVLEKVIEFLQLYHADPMCKIEKPLNKPKLEDLVQPQYVEYINALHYKIVFQIIDAANFLGIEPLLSLSLAWVAFVLKGPTVEEFKKLFTIHNDFTPEE 169
            V L ++DG     V   +   S+L+K M+ E   +  D  ++PL  V   VL KVIEF + +  +PM +IEKPL    + D+VQ  Y ++++ +   ++F++I AAN++ I+PLL L+ A VA ++KG T E+ ++ F I NDF+PEE
Sbjct:   10 VNLISKDGD-SFSVPLAVAKMSELVKGMIDEDAEDEGDKIEIPLPNVKSQVLNKVIEFCEHHLQEPMTEIEKPLKSQVMADVVQKWYADFVD-VEQVLLFELILAANYMDIKPLLDLTCATVAGMIKGKTPEDIRQTFGIQNDFSPEE 155          
BLAST of NO14G00140 vs. NCBI_GenBank
Match: PCI31026.1 (hypothetical protein COB52_00540 [Candidatus Kaiserbacteria bacterium])

HSP 1 Score: 98.6 bits (244), Expect = 2.400e-17
Identity = 57/146 (39.04%), Postives = 91/146 (62.33%), Query Frame = 0
Query:   23 LQARDGALDEPVDARILLPSDLLKSMLPESLSEIEDDFQVPLQGVDKAVLEKVIEFLQLYHADPMCKIEKPLNKPKLEDLVQPQYVEYINALHYKIVFQIIDAANFLGIEPLLSLSLAWVAFVLKGPTVEEFKKLFTIHNDFTPEE 169
            L  ++G + E V+  I++ S L++SM+ +S    + D  +PL  V KA+L K+I+F +    +P  +IEKPL    L D+V   Y  ++  L  +++F++I AAN++ I+ LL LS A VA ++KG ++ E +K F I NDFTPEE
Sbjct:    7 LSVQEGEIIE-VEKDIIIKSSLVQSMIDDS---SDADEVIPLPNVKKAILTKIIDFCKYSKDNPTPEIEKPLRSSNLADVVPQWYANFVE-LEQEVLFELILAANYMDIKSLLELSCAKVASMIKGKSIPEIRKFFNIENDFTPEE 147          
BLAST of NO14G00140 vs. NCBI_GenBank
Match: CDW87582.1 (glycoprotein fp21 [Stylonychia lemnae])

HSP 1 Score: 96.3 bits (238), Expect = 1.200e-16
Identity = 58/148 (39.19%), Postives = 88/148 (59.46%), Query Frame = 0
Query:   21 VTLQARDGALDEPVDARILLPSDLLKSMLPESLSEIEDDFQVPLQGVDKAVLEKVIEFLQLYHADPMCKIEKPLNKPKLEDLVQPQYVEYINALHYKIVFQIIDAANFLGIEPLLSLSLAWVAFVLKGPTVEEFKKLFTIHNDFTPEE 169
            V L   +G + E VD  +   S L+K M+ +S  E E    +PL  V + +L+K+I+F      +   +IEKPL    L D+  P Y E++N L  +++F++I AAN+L I+PLL L+ A VA ++K  ++ E +K F I NDFTPEE
Sbjct:    4 VKLVTSEGEIVE-VDIEVASKSVLIKGMIDDSGVEEE----IPLPNVKRNILQKIIDFCTYIKDNSPPEIEKPLKSNNLNDVTTPWYAEFVN-LDQEVLFELILAANYLDIKPLLELACAKVASLIKNRSIPEIRKFFNIENDFTPEE 145          
BLAST of NO14G00140 vs. NCBI_GenBank
Match: OQR91138.1 (S-phase kinase-associated protein 1A [Thraustotheca clavata])

HSP 1 Score: 96.3 bits (238), Expect = 1.200e-16
Identity = 58/148 (39.19%), Postives = 90/148 (60.81%), Query Frame = 0
Query:   21 VTLQARDGALDEPVDARILLPSDLLKSMLPESLSEIEDDFQVPLQGVDKAVLEKVIEFLQLYHADPMCKIEKPLNKPKLEDLVQPQYVEYINALHYKIVFQIIDAANFLGIEPLLSLSLAWVAFVLKGPTVEEFKKLFTIHNDFTPEE 169
            V L ++DG   E V   +   S+L+K+M+ +   + +D  ++PL  V   VL KVIEF + +H +PM  IEKPL    + D+V      +++ +   ++F++I AAN++ I+ LL LS A VA ++KG T EE ++ F I NDFTPEE
Sbjct:    9 VNLVSQDGDSFE-VPRSVACTSELVKTMVADEQDD-DDVQEIPLPNVKSTVLSKVIEFCRHHHNNPMQDIEKPLRSSDMHDVVSEWDANFVD-IEQDLLFELILAANYMDIKSLLDLSCAKVASMIKGKTPEEIRETFNITNDFTPEE 153          
The following BLAST results are available for this feature:
BLAST of NO14G00140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009033202.14.200e-2243.70hypothetical protein AURANDRAFT_58667 [Aureococcus... [more]
XP_002294707.12.700e-2141.91hypothetical protein THAPSDRAFT_38460, partial [Th... [more]
EWM24786.13.600e-2143.88glycoprotein fp21 [Nannochloropsis gaditana][more]
CBJ48672.11.000e-2038.82conserved unknown protein [Ectocarpus siliculosus][more]
GAX21881.16.700e-2041.61S-phase kinase-associated protein 1 [Fistulifera s... [more]
EWM25403.11.500e-1940.67glycoprotein fp21 [Nannochloropsis gaditana][more]
XP_002176583.13.700e-1838.51predicted protein [Phaeodactylum tricornutum CCAP ... [more]
PCI31026.12.400e-1739.04hypothetical protein COB52_00540 [Candidatus Kaise... [more]
CDW87582.11.200e-1639.19glycoprotein fp21 [Stylonychia lemnae][more]
OQR91138.11.200e-1639.19S-phase kinase-associated protein 1A [Thraustothec... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL137nonsL137Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00140.1NO14G00140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00140.1NO14G00140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00140 ID=NO14G00140|Name=NO14G00140|organism=Nannochloropsis oceanica|type=gene|length=3244bp
GATTTATTGCTCGTTAAGTATCCACATATCTCTCTTACACGAGCCTTGTT
GTGTATCCAAAGAGGGGCCGCTCAAGACTGGCGCAGGTGGTGTGGGTACG
CGTCCAGAGGAGCAAAAATCAAAAGAAGTCCATTATCCATTATCAGTGGG
TGTTTCTTCTATAGAGCATACCCCACCTATCCACAGCATGCACACTCATG
CAGGCTTGCGACAGCAGGACCATGCATGCAGGTACAAGGAAAGTGTTGGT
AAAGTGCCGCTCTACCCTTGTCATATGACACAACACACGGCCAGCTCCCC
GTCCTCATCCTCCTCCTCCTTTCTCATGCTCCCCATCTCCCCTCAAGCAC
ATACACACACAAACACCTCGCGCACAGACCTCCCCAGCTGCGACACCACA
CCGCACCTCAAATAAGCAAGCAAGCAGAATGGAGAAATCCTCCGAAATGG
TGAATGAGAAGGAGGGAGAGGGCGCCCCGCAGAAGTTTGTGACCTTACAG
GCTCGAGATGGGGCATTGGATGAGCCCGTGGATGCCCGCATCCTTTTGCC
ATCGGACCTGTTGAAAAGCATGCTGCCCGAGTCGTgtaaggaggggaggg
aagatggagggggggggtagagggagggagcgtaggcgtgttgtgcttgt
gatgttcttggtttgagccggaacgtgcgatggggaagtaggaggagagg
aggagaggagagagagaggggggaaggaggacagcaggaagggagggttg
gagaaagaaagggttggaaaagagggttgtcgcaacgctccgttgatctg
gtggtggtcggtggtgtggtggtatcgatgctggtagtcgtagtgctggt
gtacgcacgagctctttttgtgagcatccgaccgtccatttcctcaaccc
tttcctcacccctattccctccacctttccctcccctgctggacagTGTC
GGAAATCGAGGATGATTTCCAAGTGCCGCTGCAGGGGGTCGACAAGGCCG
TCCTGGAGAAGgtacggagggaggaagggagggagggggggaggaaaaag
aggacgtgtaatgaaaagaatgaatgccagcatgtcacacccgtgtggct
ttccgacctacacgtccctccctccctcccttccagGTGATTGAGTTCTT
GCAGCTCTACCACGCGGATCCCATGTGCAAGATCGAGAAGgtgcccaggg
agggagggagggagggagggggggagggaggggggaaaggagggtaggag
ggagaagcggggcctacaagccagccgccagccgaaggaataattcacaa
tgatgctttcctccctccccctagCCCTTAAACAAGCCCAAGCTTGAGGA
TCTAGTCCAGCCGCAGTACGTCGAGTACATCAACGCCCTCCACTACAAGA
TCGTCTTCCAGATCATCGACGCGgtaagcatccctccctccctccgtccc
tccttccctccctccctcccttcctccctgccttcctccctccatccctc
tgtttccttctccctcatcacctattcataaatccttgtctcctgtttct
ccctccctccctccctccctccctccgatttccttcctccctcctcacct
gtttataaattcttgcgtcttccgtctctccttccctccctccctccctc
cctccctccctctctccctcccacagcgcactttctcctctccattcgcc
cctgatcactcatcgcactaccctccctccctccctccttccccccttcc
ccccctccctccctcatgcagGCAAATTTTCTGGGCATCGAGCCCCTCCT
CTCCCTCTCCCTCGCCTGGGTCGCGTTTGTCCTAAAGGgtgagtgggcga
gggagggagggagggagggagggaggaaagtctaggaaggaaatgccttt
actgcgggcacacgtgtcctgccaccctgcatctcctctgccctccctcc
ctccctccctccctccctccccctttttccctccctccttctttgcacgc
tcttcggtatttgcaaccaaggccaggaagtcagcccctacctccctccc
tccctccctccctccctccctccctgcagGCCCCACGGTGGAGGAGTTCA
AGAAGCTCTTCACGATCCACAACGACTTCACGCCCGAGgtagggagggag
ggcgggggaaaaggaagaagagagagaaggaggagaaaaagaggacgatt
gagaaggaaacgagggtggaagagggcaagagggagggggagacttgttt
caaaaggggaagatccatcccaacagcgacgcccactcccatgccctccc
tctctccctccttccctccctccctccccaactccagGAGGAGGCCATCT
TCCGCCGGGAGTATCTGTTGCCACGCCGGAATCGGGCAGGTGGGGATGGA
GGGGCGGGGGGAGGGGCGGCAGGGGGCAGTGGGAGCAGCACCACCGCGTG
AAGAGAGAATAAAGGTGGAGAGGTGGGGGAAGAGGGAATGTGAATTTGCA
AGGGGAGGGAGGGAGCGCTTGAGGGAAGGTGGGAGAATTTGGCGGAGATG
TGCATATGTCTAGATGAAACGTGTTGGGGAGGAAGAATGGCATGCTGGAG
GGATGCTTACTCTCCTTATGGCAAGGGAGGAGAGAGGAAGGAGGGAGGGA
GGAAGAGGGAGAGAGAGAGAGGGAGGGGGCGATGTATGTTTAGGAGAAAG
AGAGGGAGGAGGAGAAGGAGAATCAGTAGGAGAAGAAGGAAAACAAGGAG
GGTGAAGGGAGAGGGCTGATGGTATTGAGGGAGGAGGAAAGTGAAAACAA
TGATCGGAATGGCAATAGTCATGGTAGATGACGTCTCTGCCACCCCTGTT
GCCCTCTTTGTGCGTCGAAAGCAAGGAGGGAGGCATGCACACTGTAGCAA
GCCATATGAAAAATGAAGAAGAAAAAGAAGGAAATAGAGCAGGACAAGAG
TGGACGCTGGAGGAGAAGAAAAAAATAAAAAAGAAGAAAAAGAAGCAGAA
AAGAAGAAATACAATTATAAGAAAAAGAGGAAGTACAAGACGAAGAGAGT
GGAATAGAAGACTAAAGAGAAGATTAAAAAAAAAAGAACTGCAATTAACT
CAAATATTATTAATTATCATGAAGCCTCTTGCCCCTTACGCCTCATTCTC
TATACAGTTTTCCCCCCGGCTCTGCTCAGCTTCCCCCCCTCTTTTTGTCC
TCCTTGCCTTTGTGGTCTGTTTAGTTTTTCCAGGTCAGGGGAAG
back to top

protein sequence of NO14G00140.1

>NO14G00140.1-protein ID=NO14G00140.1-protein|Name=NO14G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MEKSSEMVNEKEGEGAPQKFVTLQARDGALDEPVDARILLPSDLLKSMLP
ESLSEIEDDFQVPLQGVDKAVLEKVIEFLQLYHADPMCKIEKPLNKPKLE
DLVQPQYVEYINALHYKIVFQIIDAANFLGIEPLLSLSLAWVAFVLKGPT
VEEFKKLFTIHNDFTPEEEAIFRREYLLPRRNRAGGDGGAGGGAAGGSGS
STTA*
back to top
Synonyms
Publications