NO14G00140.1, NO14G00140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00140.1
Unique NameNO14G00140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1836
Alignment locationchr14:45921..49164 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:45921..49164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO14G00140.1 vs.
Match: XP_009033202.1 (hypothetical protein AURANDRAFT_58667 [Aureococcus anophagefferens]; EGB12114.1 hypothetical protein AURANDRAFT_58667 [Aureococcus anophagefferens])

HSP 1 Score: 119.8 bits (299), Expect = 1.000e-23
Identity = 63/142 (44.37%), Postives = 94/142 (66.20%), Query Frame = 0
Query:   34 VDARILLPSDLLKSMLPESLSEIEDDFQVPLQGVDKAVLEKVIEFLQLYHADPMCKIEKPLNKPKLEDLVQPQYVEYINALHYKIVFQIIDAANFLGIEPLLSLSLAWVAFVLKGPTVEEFKKLFTIHNDFTPEEEAIFRRE 176
            V+ ++   S+L+K+M+PE   E E+  ++PL  V   VL KVIEF + Y  +PM +IEKPL    + ++VQ  Y  Y++ +  +++F++I AAN++ I+PLL L+ A VA ++KG T EE +K F I NDFTPEEEA  R E
Sbjct:   10 VEVKVAKMSELVKTMIPEEADEEEEAQEIPLPNVKSHVLAKVIEFCRRYAEEPMSEIEKPLKSANMHEVVQEWYANYVD-VDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRKTFNIVNDFTPEEEAQVREE 150          
The following BLAST results are available for this feature:
BLAST of NO14G00140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009033202.11.000e-2344.37hypothetical protein AURANDRAFT_58667 [Aureococcus... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00140NO14G00140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00140.1NO14G00140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00140.1.cds1NO14G00140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00140.1.cds2NO14G00140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00140.1.cds3NO14G00140.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00140.1.cds4NO14G00140.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00140.1.cds5NO14G00140.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00140.1.cds6NO14G00140.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00140.1.cds7NO14G00140.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00140.1 ID=NO14G00140.1|Name=NO14G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1836bp
GATTTATTGCTCGTTAAGTATCCACATATCTCTCTTACACGAGCCTTGTT
GTGTATCCAAAGAGGGGCCGCTCAAGACTGGCGCAGGTGGTGTGGGTACG
CGTCCAGAGGAGCAAAAATCAAAAGAAGTCCATTATCCATTATCAGTGGG
TGTTTCTTCTATAGAGCATACCCCACCTATCCACAGCATGCACACTCATG
CAGGCTTGCGACAGCAGGACCATGCATGCAGGTACAAGGAAAGTGTTGGT
AAAGTGCCGCTCTACCCTTGTCATATGACACAACACACGGCCAGCTCCCC
GTCCTCATCCTCCTCCTCCTTTCTCATGCTCCCCATCTCCCCTCAAGCAC
ATACACACACAAACACCTCGCGCACAGACCTCCCCAGCTGCGACACCACA
CCGCACCTCAAATAAGCAAGCAAGCAGAATGGAGAAATCCTCCGAAATGG
TGAATGAGAAGGAGGGAGAGGGCGCCCCGCAGAAGTTTGTGACCTTACAG
GCTCGAGATGGGGCATTGGATGAGCCCGTGGATGCCCGCATCCTTTTGCC
ATCGGACCTGTTGAAAAGCATGCTGCCCGAGTCGTTGTCGGAAATCGAGG
ATGATTTCCAAGTGCCGCTGCAGGGGGTCGACAAGGCCGTCCTGGAGAAG
GTGATTGAGTTCTTGCAGCTCTACCACGCGGATCCCATGTGCAAGATCGA
GAAGCCCTTAAACAAGCCCAAGCTTGAGGATCTAGTCCAGCCGCAGTACG
TCGAGTACATCAACGCCCTCCACTACAAGATCGTCTTCCAGATCATCGAC
GCGGCAAATTTTCTGGGCATCGAGCCCCTCCTCTCCCTCTCCCTCGCCTG
GGTCGCGTTTGTCCTAAAGGGCCCCACGGTGGAGGAGTTCAAGAAGCTCT
TCACGATCCACAACGACTTCACGCCCGAGGAGGAGGCCATCTTCCGCCGG
GAGTATCTGTTGCCACGCCGGAATCGGGCAGGTGGGGATGGAGGGGCGGG
GGGAGGGGCGGCAGGGGGCAGTGGGAGCAGCACCACCGCGTGAAGAGAGA
ATAAAGGTGGAGAGGTGGGGGAAGAGGGAATGTGAATTTGCAAGGGGAGG
GAGGGAGCGCTTGAGGGAAGGTGGGAGAATTTGGCGGAGATGTGCATATG
TCTAGATGAAACGTGTTGGGGAGGAAGAATGGCATGCTGGAGGGATGCTT
ACTCTCCTTATGGCAAGGGAGGAGAGAGGAAGGAGGGAGGGAGGAAGAGG
GAGAGAGAGAGAGGGAGGGGGCGATGTATGTTTAGGAGAAAGAGAGGGAG
GAGGAGAAGGAGAATCAGTAGGAGAAGAAGGAAAACAAGGAGGGTGAAGG
GAGAGGGCTGATGGTATTGAGGGAGGAGGAAAGTGAAAACAATGATCGGA
ATGGCAATAGTCATGGTAGATGACGTCTCTGCCACCCCTGTTGCCCTCTT
TGTGCGTCGAAAGCAAGGAGGGAGGCATGCACACTGTAGCAAGCCATATG
AAAAATGAAGAAGAAAAAGAAGGAAATAGAGCAGGACAAGAGTGGACGCT
GGAGGAGAAGAAAAAAATAAAAAAGAAGAAAAAGAAGCAGAAAAGAAGAA
ATACAATTATAAGAAAAAGAGGAAGTACAAGACGAAGAGAGTGGAATAGA
AGACTAAAGAGAAGATTAAAAAAAAAAGAACTGCAATTAACTCAAATATT
ATTAATTATCATGAAGCCTCTTGCCCCTTACGCCTCATTCTCTATACAGT
TTTCCCCCCGGCTCTGCTCAGCTTCCCCCCCTCTTTTTGTCCTCCTTGCC
TTTGTGGTCTGTTTAGTTTTTCCAGGTCAGGGGAAG
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protein sequence of NO14G00140.1

>NO14G00140.1-protein ID=NO14G00140.1-protein|Name=NO14G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MEKSSEMVNEKEGEGAPQKFVTLQARDGALDEPVDARILLPSDLLKSMLP
ESLSEIEDDFQVPLQGVDKAVLEKVIEFLQLYHADPMCKIEKPLNKPKLE
DLVQPQYVEYINALHYKIVFQIIDAANFLGIEPLLSLSLAWVAFVLKGPT
VEEFKKLFTIHNDFTPEEEAIFRREYLLPRRNRAGGDGGAGGGAAGGSGS
STTA*
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mRNA from alignment at chr14:45921..49164-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00140.1 ID=NO14G00140.1|Name=NO14G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=3244bp|location=Sequence derived from alignment at chr14:45921..49164- (Nannochloropsis oceanica)
GATTTATTGCTCGTTAAGTATCCACATATCTCTCTTACACGAGCCTTGTT GTGTATCCAAAGAGGGGCCGCTCAAGACTGGCGCAGGTGGTGTGGGTACG CGTCCAGAGGAGCAAAAATCAAAAGAAGTCCATTATCCATTATCAGTGGG TGTTTCTTCTATAGAGCATACCCCACCTATCCACAGCATGCACACTCATG CAGGCTTGCGACAGCAGGACCATGCATGCAGGTACAAGGAAAGTGTTGGT AAAGTGCCGCTCTACCCTTGTCATATGACACAACACACGGCCAGCTCCCC GTCCTCATCCTCCTCCTCCTTTCTCATGCTCCCCATCTCCCCTCAAGCAC ATACACACACAAACACCTCGCGCACAGACCTCCCCAGCTGCGACACCACA CCGCACCTCAAATAAGCAAGCAAGCAGAATGGAGAAATCCTCCGAAATGG TGAATGAGAAGGAGGGAGAGGGCGCCCCGCAGAAGTTTGTGACCTTACAG GCTCGAGATGGGGCATTGGATGAGCCCGTGGATGCCCGCATCCTTTTGCC ATCGGACCTGTTGAAAAGCATGCTGCCCGAGTCGTGTAAGGAGGGGAGGG AAGATGGAGGGGGGGGGTAGAGGGAGGGAGCGTAGGCGTGTTGTGCTTGT GATGTTCTTGGTTTGAGCCGGAACGTGCGATGGGGAAGTAGGAGGAGAGG AGGAGAGGAGAGAGAGAGGGGGGAAGGAGGACAGCAGGAAGGGAGGGTTG GAGAAAGAAAGGGTTGGAAAAGAGGGTTGTCGCAACGCTCCGTTGATCTG GTGGTGGTCGGTGGTGTGGTGGTATCGATGCTGGTAGTCGTAGTGCTGGT GTACGCACGAGCTCTTTTTGTGAGCATCCGACCGTCCATTTCCTCAACCC TTTCCTCACCCCTATTCCCTCCACCTTTCCCTCCCCTGCTGGACAGTGTC GGAAATCGAGGATGATTTCCAAGTGCCGCTGCAGGGGGTCGACAAGGCCG TCCTGGAGAAGGTACGGAGGGAGGAAGGGAGGGAGGGGGGGAGGAAAAAG AGGACGTGTAATGAAAAGAATGAATGCCAGCATGTCACACCCGTGTGGCT TTCCGACCTACACGTCCCTCCCTCCCTCCCTTCCAGGTGATTGAGTTCTT GCAGCTCTACCACGCGGATCCCATGTGCAAGATCGAGAAGGTGCCCAGGG AGGGAGGGAGGGAGGGAGGGGGGGAGGGAGGGGGGAAAGGAGGGTAGGAG GGAGAAGCGGGGCCTACAAGCCAGCCGCCAGCCGAAGGAATAATTCACAA TGATGCTTTCCTCCCTCCCCCTAGCCCTTAAACAAGCCCAAGCTTGAGGA TCTAGTCCAGCCGCAGTACGTCGAGTACATCAACGCCCTCCACTACAAGA TCGTCTTCCAGATCATCGACGCGGTAAGCATCCCTCCCTCCCTCCGTCCC TCCTTCCCTCCCTCCCTCCCTTCCTCCCTGCCTTCCTCCCTCCATCCCTC TGTTTCCTTCTCCCTCATCACCTATTCATAAATCCTTGTCTCCTGTTTCT CCCTCCCTCCCTCCCTCCCTCCCTCCGATTTCCTTCCTCCCTCCTCACCT GTTTATAAATTCTTGCGTCTTCCGTCTCTCCTTCCCTCCCTCCCTCCCTC CCTCCCTCCCTCTCTCCCTCCCACAGCGCACTTTCTCCTCTCCATTCGCC CCTGATCACTCATCGCACTACCCTCCCTCCCTCCCTCCTTCCCCCCTTCC CCCCCTCCCTCCCTCATGCAGGCAAATTTTCTGGGCATCGAGCCCCTCCT CTCCCTCTCCCTCGCCTGGGTCGCGTTTGTCCTAAAGGGTGAGTGGGCGA GGGAGGGAGGGAGGGAGGGAGGGAGGAAAGTCTAGGAAGGAAATGCCTTT ACTGCGGGCACACGTGTCCTGCCACCCTGCATCTCCTCTGCCCTCCCTCC CTCCCTCCCTCCCTCCCTCCCCCTTTTTCCCTCCCTCCTTCTTTGCACGC TCTTCGGTATTTGCAACCAAGGCCAGGAAGTCAGCCCCTACCTCCCTCCC TCCCTCCCTCCCTCCCTCCCTCCCTGCAGGCCCCACGGTGGAGGAGTTCA AGAAGCTCTTCACGATCCACAACGACTTCACGCCCGAGGTAGGGAGGGAG GGCGGGGGAAAAGGAAGAAGAGAGAGAAGGAGGAGAAAAAGAGGACGATT GAGAAGGAAACGAGGGTGGAAGAGGGCAAGAGGGAGGGGGAGACTTGTTT CAAAAGGGGAAGATCCATCCCAACAGCGACGCCCACTCCCATGCCCTCCC TCTCTCCCTCCTTCCCTCCCTCCCTCCCCAACTCCAGGAGGAGGCCATCT TCCGCCGGGAGTATCTGTTGCCACGCCGGAATCGGGCAGGTGGGGATGGA GGGGCGGGGGGAGGGGCGGCAGGGGGCAGTGGGAGCAGCACCACCGCGTG AAGAGAGAATAAAGGTGGAGAGGTGGGGGAAGAGGGAATGTGAATTTGCA AGGGGAGGGAGGGAGCGCTTGAGGGAAGGTGGGAGAATTTGGCGGAGATG TGCATATGTCTAGATGAAACGTGTTGGGGAGGAAGAATGGCATGCTGGAG GGATGCTTACTCTCCTTATGGCAAGGGAGGAGAGAGGAAGGAGGGAGGGA GGAAGAGGGAGAGAGAGAGAGGGAGGGGGCGATGTATGTTTAGGAGAAAG AGAGGGAGGAGGAGAAGGAGAATCAGTAGGAGAAGAAGGAAAACAAGGAG GGTGAAGGGAGAGGGCTGATGGTATTGAGGGAGGAGGAAAGTGAAAACAA TGATCGGAATGGCAATAGTCATGGTAGATGACGTCTCTGCCACCCCTGTT GCCCTCTTTGTGCGTCGAAAGCAAGGAGGGAGGCATGCACACTGTAGCAA GCCATATGAAAAATGAAGAAGAAAAAGAAGGAAATAGAGCAGGACAAGAG TGGACGCTGGAGGAGAAGAAAAAAATAAAAAAGAAGAAAAAGAAGCAGAA AAGAAGAAATACAATTATAAGAAAAAGAGGAAGTACAAGACGAAGAGAGT GGAATAGAAGACTAAAGAGAAGATTAAAAAAAAAAGAACTGCAATTAACT CAAATATTATTAATTATCATGAAGCCTCTTGCCCCTTACGCCTCATTCTC TATACAGTTTTCCCCCCGGCTCTGCTCAGCTTCCCCCCCTCTTTTTGTCC TCCTTGCCTTTGTGGTCTGTTTAGTTTTTCCAGGTCAGGGGAAG
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Coding sequence (CDS) from alignment at chr14:45921..49164-

>NO14G00140.1 ID=NO14G00140.1|Name=NO14G00140.1|organism=Nannochloropsis oceanica|type=CDS|length=615bp|location=Sequence derived from alignment at chr14:45921..49164- (Nannochloropsis oceanica)
ATGGAGAAATCCTCCGAAATGGTGAATGAGAAGGAGGGAGAGGGCGCCCC
GCAGAAGTTTGTGACCTTACAGGCTCGAGATGGGGCATTGGATGAGCCCG
TGGATGCCCGCATCCTTTTGCCATCGGACCTGTTGAAAAGCATGCTGCCC
GAGTCGTTGTCGGAAATCGAGGATGATTTCCAAGTGCCGCTGCAGGGGGT
CGACAAGGCCGTCCTGGAGAAGGTGATTGAGTTCTTGCAGCTCTACCACG
CGGATCCCATGTGCAAGATCGAGAAGCCCTTAAACAAGCCCAAGCTTGAG
GATCTAGTCCAGCCGCAGTACGTCGAGTACATCAACGCCCTCCACTACAA
GATCGTCTTCCAGATCATCGACGCGGCAAATTTTCTGGGCATCGAGCCCC
TCCTCTCCCTCTCCCTCGCCTGGGTCGCGTTTGTCCTAAAGGGCCCCACG
GTGGAGGAGTTCAAGAAGCTCTTCACGATCCACAACGACTTCACGCCCGA
GGAGGAGGCCATCTTCCGCCGGGAGTATCTGTTGCCACGCCGGAATCGGG
CAGGTGGGGATGGAGGGGCGGGGGGAGGGGCGGCAGGGGGCAGTGGGAGC
AGCACCACCGCGTGA
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Synonyms
Publications