NO14G00100, NO14G00100 (gene) Nannochloropsis oceanica

Overview
NameNO14G00100
Unique NameNO14G00100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3094
Alignment locationchr14:29332..32425 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:29332..32425 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO14G00100 vs. NCBI_GenBank
Match: EWM24789.1 (hypothetical protein Naga_100912g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 489.2 bits (1258), Expect = 1.300e-134
Identity = 236/347 (68.01%), Postives = 277/347 (79.83%), Query Frame = 0 
Query:    6 LFVLLLATVVSAQKTILALKPTFNATAAITLDYIDPPANIVLNTRDFPIKVAFANVPDGEVMDVHVDLIGDGGYTWFGGGLVQVTGPAGEATIPIEVRVPSYYGGNLSVHAFVTPAGGGFEQRVANAPELEVGIDHTPVNAIGVLCQPRQVQPGTPFTVNLWFTQTHARPMDLIAVALNADTKDYLGGFQVPVKEQQGHVSGAFNLHATPLDTPVKFKAWLSPRGEVAPNYVTYTMLNIPLGPAVVQPCNPDPTNEWTQTGLPQASWVELHDVPKVVSPGEKLTLRLVYNLRPEDER-IVNATVAMFTWDWKTHEANEIVAAKAQLPPVFEEALISLTIPTNAQSGP 352
            L  ++LA  V AQK++LA+KPT NA+ A+TL+Y+DPPA+I+LNTRDFPI++A+ ++P+G +MD+HVDLIGD   +WFGGGL QV GP G  T+PIEVRVPSY  GNLSVHAF+TPAGG F+ RVANAPELEVGID TPVNAIGVLCQPR VQPG PF VNLWFTQTH RPMDLIAVAL+ DTK+Y GGFQVPVK QQGHVSG F+L   PL  P+KFKAWLSPRGEVAPNYVTYTMLNIPLGP  VQPCNPDP NEWT+TG+P A+WVELHDVPKV++PGEK  +RLVYNL PE ++   NATV++  WDW           K +LPP F    +S+  P+  QS P
Sbjct:    8 LAAIILAREVYAQKSVLAVKPTLNASQAMTLNYVDPPASIILNTRDFPIQMAYTDIPEGLIMDLHVDLIGDN--SWFGGGLKQVEGPDGTVTVPIEVRVPSYIAGNLSVHAFLTPAGGSFQARVANAPELEVGIDRTPVNAIGVLCQPRAVQPGQPFVVNLWFTQTHPRPMDLIAVALDGDTKEYYGGFQVPVKAQQGHVSGRFDLRPAPLTAPLKFKAWLSPRGEVAPNYVTYTMLNIPLGPETVQPCNPDPDNEWTETGIPPANWVELHDVPKVLTPGEKANIRLVYNLVPESQKAATNATVSLMMWDW-----------KVRLPPSF---FLSVFPPSLIQSMP 338
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BLAST of NO14G00100 vs. NCBI_GenBank
Match: EWM30149.1 (hypothetical protein Naga_100115g7 [Nannochloropsis gaditana])

HSP 1 Score: 87.0 bits (214), Expect = 1.400e-13
Identity = 63/220 (28.64%), Postives = 97/220 (44.09%), Query Frame = 0 
Query:  147 IGVLCQPRQVQPGTPFTVNLWFTQTHARPMDLIAVALNADTKDYLGGFQVPVKEQQGHVSGAFNLHATPLDTPVKFKAWLSPRGEVAPNYVTYTMLNIPLGPAVVQPCNP------DPTNEWTQTGLPQASWVELHDVPKVVSPGEKLTLRLVYNLRPEDERIVNATVAMFTWDWKTHEANEIVAAKAQLPPVFEEALISLTIPTNAQSGPDGIFFVASL 361
            I V+C P  V  G PFTVN+ +T    RP+D+    LNA TK +  G       Q G VS    + +  ++ P  +K +L+PRGE  PN +  T     L   V   C P      DP        +    +V L  VP V++PG +  + + YNL       V A  A+ +        N I+++ A L    +   +SL +P    +  + ++ V +L
Sbjct:  157 IEVMCHPETVAMGKPFTVNVKYTSDIKRPVDVHVDVLNAHTKAFYAGKWEEFDTQAGEVSLTIQMPSWGVEEPFLWKVFLTPRGEPFPNMLAETGFVAHLADYVKNDCAPFKSYGFDPPE--LANNVKTVDFVALQKVPAVLTPGSQAMVDVEYNL-------VGAAKAILSVALMRKGPNTIISSFADLAAPGQNK-VSLPLPVPYDAPKEAVYIVVTL 366
The following BLAST results are available for this feature:
BLAST of NO14G00100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM24789.11.300e-13468.01hypothetical protein Naga_100912g2, partial [Nanno... [more]
EWM30149.11.400e-1328.64hypothetical protein Naga_100115g7 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL137nonsL137Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006188NSK006188Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00100.1NO14G00100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100912g2gene5694Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00100.1NO14G00100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00100 ID=NO14G00100|Name=NO14G00100|organism=Nannochloropsis oceanica|type=gene|length=3094bp
AACACCACAGACATGTACATCCGCACACTCTTCGTGTTACTTTTGGCCAC
GGTGGTTTCCGCCCAGAAGACGATCCTGGCTCTCAAGCCGACGTTCAATG
CGACCGCGGCCATCACGCTCGACTATgtacgtaagggagggaggagggaa
gggagggaggtagggatgcgctaaggcagctgtcctgtagtgggtgtgca
ccacaatagactgtgatagtgaccctgtaccttttcccttccagactgtc
tctctgcacgtccctccaacccactcattcccttcgtcccccctcactcc
cttcctctatctcaaccccacacctgcagATCGATCCCCCCGCAAACATC
GTATTGAACACGAGGGACTTCCCCATTAAGGTCGCATTTGCCAACGTTCC
CGATGGCGAGGTGgtgcgtgaacggagggagggagggaggaaagggagca
gggcagaaaggaatggagagatacaaagctgaagttcttctccagaggca
tcagcagcttcttcaccctggtcgtcttctatatctcatctttcgcgtgt
tatacaaaatttcgctgtgaggaacatggcttcctcgagagctacatgtc
ttccttgtgtgaagctctgctttccctctatcatcactgataggcctacc
cctccctccctccctccctccctccctccctccctcttttccccccgatc
tcctagATGGACGTGCACGTAGATCTGATCGGCGACGGGGGCTATACCTG
GTTCGGTGGCGGGCTTGTTCAAGTCACAGGCCCCGCGGGCGAGGCCACGg
tatggacctcttgcctccctccctccctccctccctccccttcctcccct
tcctcctctccttcccttgtcccaccaccgcccttcctccccacccgcag
ATCCCTATCGAGGTCCGTGTCCCCTCCTACTACGGAGGGAATCTCTCCGT
CCACGCGTTCGTCACGCCGGCCGGCGGGGGCTTCGAGCAGCGCGTCGCCA
ATGCCCCTGAGCTAGAGgtgagggagggagggaggcagggaggtatggag
agatgaaggaggggttcacccgacaaggattaatgagaggctatgttaag
accatccctgttgcctctccctccctccctccctccctccctccccagag
aggcatccaccacatcccagtcaaccttacaccctcccaccctccctccc
tccctccctccctccctccctccccccccccagGTGGGCATCGACCATAC
CCCTGTCAATGCCATCGGCGTCCTCTGTCAGCCGCGGCAGGTCCAGCCCG
GCACCCCCTTCACGGTCAACCTGTGGTTCACACAGACACACGCGCGGCCC
ATGGACCTCATCGCCGTGGCCCTAAACGCGGACACCAAGGACTACCTGGG
CGGCTTCCAGgtagggaggaagggcggggaggagggagggcgggcggtca
ctgtgcctcgcgttttacaagggtctcgccagctcgacatatgagctgtc
tgaactccctccctccctccctccctccctccctccctccctccctcccc
acccacacccctctccatatgccccttaaggggcagcgcacaattcacac
tgcctcctcctcctcctcctcctcctccccctctccatcctcactaccct
ccctcccctcctcccagGTGCCGGTGAAGGAGCAGCAGGGCCACGTCTCA
GGAGCCTTTAATTTGCATGCCACGCCCCTCGACACGCCCGTCAAATTTAA
GGCCTGGCTCTCCCCCCGCGGCGAGGTCGCGCCCAACTACGTCACGTACA
CCATGgtacgccctccctccctccctccctccctccctccctccctccct
ccctccctccctccctcccctgaacctgcccctgggcccggcgtgggcgc
agccataaaaccttcctaccccgccctccctccctccctccctccctccc
tccctcagCTGAACATCCCCCTGGGTCCTGCGGTGGTGCAGCCCTGCAAC
CCCGACCCGACCAATGAATGGACGCAGACCGGCCTCCCCCAGGCCAGCTG
GGTCGAGCTCCACGATGTGCCCAAGgtaggactacacctctccctccctc
cctccctccctccctccctccctccctcccgccctggtgggatgtctttg
cctgccagtcccgagggccatggggatcaatgctcaggcacagaagctca
ggcaaacgaattctccctccctccctccctccctcccccctccccccctc
ccccctccctctctcagGTGGTCTCCCCGGGCGAAAAGCTCACCCTCCGT
CTCGTCTATAACCTGCGGCCCGAGGATGAAAGGATAGTTAATGCCACCGT
TGCCATGTTCACTTGGGACTGGAAGgtgggtcctccctccctccctcgcc
tccctccctctcttccctctcttcctccctctctccttccctctccctct
ccctctccctctccctctccctctccctctgccttgcccccatagtctaa
tttctctgttctttcaaatggctcgtcatccctccctccctccttccctc
cctccctccttcgtcccctctgtccacgaagccctggaaaccgacctctc
cctccctccctccctcctccctccctccctccagACGCACGAGGCGAACG
AGATCGTGGCGGCCAAGGCCCAGCTCCCTCCCGTCTTTGAGGAGGCCCTC
ATCTCACTCACCATCCCCACAAATGCCCAGAGCGGGCCCGACGGCATTTT
TTTCGTGGCCAGCCTCGCGGGGATGCCGGGGGTGGAGGACCGCGTGTACC
AGgtgcgggcgagggagggagggagggagggagggagggagggaggacgg
gaagggaggggcatgagaacaaagacactccacctcctttgcatgcgcga
tgacacggatcgatccttccgttgacctccctccctccctccctccctcc
ctccctccctccctccctccgtctcagGTGGCTTTGGATGGCCCTATGCC
CATTCGTGAGGCTGAGGTCCTCGATGATGCGCAGGTCATTCCTGCTGCCA
CTGCTGCCCCTGCTGCCCACATGCTCCGGCACGGGCGCCAATAA
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protein sequence of NO14G00100.1

>NO14G00100.1-protein ID=NO14G00100.1-protein|Name=NO14G00100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MYIRTLFVLLLATVVSAQKTILALKPTFNATAAITLDYIDPPANIVLNTR
DFPIKVAFANVPDGEVMDVHVDLIGDGGYTWFGGGLVQVTGPAGEATIPI
EVRVPSYYGGNLSVHAFVTPAGGGFEQRVANAPELEVGIDHTPVNAIGVL
CQPRQVQPGTPFTVNLWFTQTHARPMDLIAVALNADTKDYLGGFQVPVKE
QQGHVSGAFNLHATPLDTPVKFKAWLSPRGEVAPNYVTYTMLNIPLGPAV
VQPCNPDPTNEWTQTGLPQASWVELHDVPKVVSPGEKLTLRLVYNLRPED
ERIVNATVAMFTWDWKTHEANEIVAAKAQLPPVFEEALISLTIPTNAQSG
PDGIFFVASLAGMPGVEDRVYQVALDGPMPIREAEVLDDAQVIPAATAAP
AAHMLRHGRQ*
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Synonyms
Publications