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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr14 | genome | chr14:29332..32425 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G00100.1 vs.
Match: EWM24789.1 (hypothetical protein Naga_100912g2, partial [Nannochloropsis gaditana]) HSP 1 Score: 489.2 bits (1258), Expect = 1.300e-134 Identity = 236/347 (68.01%), Postives = 277/347 (79.83%), Query Frame = 0
Query: 6 LFVLLLATVVSAQKTILALKPTFNATAAITLDYIDPPANIVLNTRDFPIKVAFANVPDGEVMDVHVDLIGDGGYTWFGGGLVQVTGPAGEATIPIEVRVPSYYGGNLSVHAFVTPAGGGFEQRVANAPELEVGIDHTPVNAIGVLCQPRQVQPGTPFTVNLWFTQTHARPMDLIAVALNADTKDYLGGFQVPVKEQQGHVSGAFNLHATPLDTPVKFKAWLSPRGEVAPNYVTYTMLNIPLGPAVVQPCNPDPTNEWTQTGLPQASWVELHDVPKVVSPGEKLTLRLVYNLRPEDER-IVNATVAMFTWDWKTHEANEIVAAKAQLPPVFEEALISLTIPTNAQSGP 352
L ++LA V AQK++LA+KPT NA+ A+TL+Y+DPPA+I+LNTRDFPI++A+ ++P+G +MD+HVDLIGD +WFGGGL QV GP G T+PIEVRVPSY GNLSVHAF+TPAGG F+ RVANAPELEVGID TPVNAIGVLCQPR VQPG PF VNLWFTQTH RPMDLIAVAL+ DTK+Y GGFQVPVK QQGHVSG F+L PL P+KFKAWLSPRGEVAPNYVTYTMLNIPLGP VQPCNPDP NEWT+TG+P A+WVELHDVPKV++PGEK +RLVYNL PE ++ NATV++ WDW K +LPP F +S+ P+ QS P
Sbjct: 8 LAAIILAREVYAQKSVLAVKPTLNASQAMTLNYVDPPASIILNTRDFPIQMAYTDIPEGLIMDLHVDLIGDN--SWFGGGLKQVEGPDGTVTVPIEVRVPSYIAGNLSVHAFLTPAGGSFQARVANAPELEVGIDRTPVNAIGVLCQPRAVQPGQPFVVNLWFTQTHPRPMDLIAVALDGDTKEYYGGFQVPVKAQQGHVSGRFDLRPAPLTAPLKFKAWLSPRGEVAPNYVTYTMLNIPLGPETVQPCNPDPDNEWTETGIPPANWVELHDVPKVLTPGEKANIRLVYNLVPESQKAATNATVSLMMWDW-----------KVRLPPSF---FLSVFPPSLIQSMP 338
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G00100.1 ID=NO14G00100.1|Name=NO14G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1245bp
AACACCACAGACATGTACATCCGCACACTCTTCGTGTTACTTTTGGCCAC
GGTGGTTTCCGCCCAGAAGACGATCCTGGCTCTCAAGCCGACGTTCAATG
CGACCGCGGCCATCACGCTCGACTATATCGATCCCCCCGCAAACATCGTA
TTGAACACGAGGGACTTCCCCATTAAGGTCGCATTTGCCAACGTTCCCGA
TGGCGAGGTGATGGACGTGCACGTAGATCTGATCGGCGACGGGGGCTATA
CCTGGTTCGGTGGCGGGCTTGTTCAAGTCACAGGCCCCGCGGGCGAGGCC
ACGATCCCTATCGAGGTCCGTGTCCCCTCCTACTACGGAGGGAATCTCTC
CGTCCACGCGTTCGTCACGCCGGCCGGCGGGGGCTTCGAGCAGCGCGTCG
CCAATGCCCCTGAGCTAGAGGTGGGCATCGACCATACCCCTGTCAATGCC
ATCGGCGTCCTCTGTCAGCCGCGGCAGGTCCAGCCCGGCACCCCCTTCAC
GGTCAACCTGTGGTTCACACAGACACACGCGCGGCCCATGGACCTCATCG
CCGTGGCCCTAAACGCGGACACCAAGGACTACCTGGGCGGCTTCCAGGTG
CCGGTGAAGGAGCAGCAGGGCCACGTCTCAGGAGCCTTTAATTTGCATGC
CACGCCCCTCGACACGCCCGTCAAATTTAAGGCCTGGCTCTCCCCCCGCG
GCGAGGTCGCGCCCAACTACGTCACGTACACCATGCTGAACATCCCCCTG
GGTCCTGCGGTGGTGCAGCCCTGCAACCCCGACCCGACCAATGAATGGAC
GCAGACCGGCCTCCCCCAGGCCAGCTGGGTCGAGCTCCACGATGTGCCCA
AGGTGGTCTCCCCGGGCGAAAAGCTCACCCTCCGTCTCGTCTATAACCTG
CGGCCCGAGGATGAAAGGATAGTTAATGCCACCGTTGCCATGTTCACTTG
GGACTGGAAGACGCACGAGGCGAACGAGATCGTGGCGGCCAAGGCCCAGC
TCCCTCCCGTCTTTGAGGAGGCCCTCATCTCACTCACCATCCCCACAAAT
GCCCAGAGCGGGCCCGACGGCATTTTTTTCGTGGCCAGCCTCGCGGGGAT
GCCGGGGGTGGAGGACCGCGTGTACCAGGTGGCTTTGGATGGCCCTATGC
CCATTCGTGAGGCTGAGGTCCTCGATGATGCGCAGGTCATTCCTGCTGCC
ACTGCTGCCCCTGCTGCCCACATGCTCCGGCACGGGCGCCAATAA back to topprotein sequence of NO14G00100.1 >NO14G00100.1-protein ID=NO14G00100.1-protein|Name=NO14G00100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MYIRTLFVLLLATVVSAQKTILALKPTFNATAAITLDYIDPPANIVLNTR
DFPIKVAFANVPDGEVMDVHVDLIGDGGYTWFGGGLVQVTGPAGEATIPI
EVRVPSYYGGNLSVHAFVTPAGGGFEQRVANAPELEVGIDHTPVNAIGVL
CQPRQVQPGTPFTVNLWFTQTHARPMDLIAVALNADTKDYLGGFQVPVKE
QQGHVSGAFNLHATPLDTPVKFKAWLSPRGEVAPNYVTYTMLNIPLGPAV
VQPCNPDPTNEWTQTGLPQASWVELHDVPKVVSPGEKLTLRLVYNLRPED
ERIVNATVAMFTWDWKTHEANEIVAAKAQLPPVFEEALISLTIPTNAQSG
PDGIFFVASLAGMPGVEDRVYQVALDGPMPIREAEVLDDAQVIPAATAAP
AAHMLRHGRQ* back to topmRNA from alignment at chr14:29332..32425+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G00100.1 ID=NO14G00100.1|Name=NO14G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=3094bp|location=Sequence derived from alignment at chr14:29332..32425+ (Nannochloropsis oceanica)
AACACCACAGACATGTACATCCGCACACTCTTCGTGTTACTTTTGGCCAC
GGTGGTTTCCGCCCAGAAGACGATCCTGGCTCTCAAGCCGACGTTCAATG
CGACCGCGGCCATCACGCTCGACTATGTACGTAAGGGAGGGAGGAGGGAA
GGGAGGGAGGTAGGGATGCGCTAAGGCAGCTGTCCTGTAGTGGGTGTGCA
CCACAATAGACTGTGATAGTGACCCTGTACCTTTTCCCTTCCAGACTGTC
TCTCTGCACGTCCCTCCAACCCACTCATTCCCTTCGTCCCCCCTCACTCC
CTTCCTCTATCTCAACCCCACACCTGCAGATCGATCCCCCCGCAAACATC
GTATTGAACACGAGGGACTTCCCCATTAAGGTCGCATTTGCCAACGTTCC
CGATGGCGAGGTGGTGCGTGAACGGAGGGAGGGAGGGAGGAAAGGGAGCA
GGGCAGAAAGGAATGGAGAGATACAAAGCTGAAGTTCTTCTCCAGAGGCA
TCAGCAGCTTCTTCACCCTGGTCGTCTTCTATATCTCATCTTTCGCGTGT
TATACAAAATTTCGCTGTGAGGAACATGGCTTCCTCGAGAGCTACATGTC
TTCCTTGTGTGAAGCTCTGCTTTCCCTCTATCATCACTGATAGGCCTACC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTTTCCCCCCGATC
TCCTAGATGGACGTGCACGTAGATCTGATCGGCGACGGGGGCTATACCTG
GTTCGGTGGCGGGCTTGTTCAAGTCACAGGCCCCGCGGGCGAGGCCACGG
TATGGACCTCTTGCCTCCCTCCCTCCCTCCCTCCCTCCCCTTCCTCCCCT
TCCTCCTCTCCTTCCCTTGTCCCACCACCGCCCTTCCTCCCCACCCGCAG
ATCCCTATCGAGGTCCGTGTCCCCTCCTACTACGGAGGGAATCTCTCCGT
CCACGCGTTCGTCACGCCGGCCGGCGGGGGCTTCGAGCAGCGCGTCGCCA
ATGCCCCTGAGCTAGAGGTGAGGGAGGGAGGGAGGCAGGGAGGTATGGAG
AGATGAAGGAGGGGTTCACCCGACAAGGATTAATGAGAGGCTATGTTAAG
ACCATCCCTGTTGCCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAGAG
AGGCATCCACCACATCCCAGTCAACCTTACACCCTCCCACCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCCCCCCCCAGGTGGGCATCGACCATAC
CCCTGTCAATGCCATCGGCGTCCTCTGTCAGCCGCGGCAGGTCCAGCCCG
GCACCCCCTTCACGGTCAACCTGTGGTTCACACAGACACACGCGCGGCCC
ATGGACCTCATCGCCGTGGCCCTAAACGCGGACACCAAGGACTACCTGGG
CGGCTTCCAGGTAGGGAGGAAGGGCGGGGAGGAGGGAGGGCGGGCGGTCA
CTGTGCCTCGCGTTTTACAAGGGTCTCGCCAGCTCGACATATGAGCTGTC
TGAACTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCC
ACCCACACCCCTCTCCATATGCCCCTTAAGGGGCAGCGCACAATTCACAC
TGCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCTCCATCCTCACTACCCT
CCCTCCCCTCCTCCCAGGTGCCGGTGAAGGAGCAGCAGGGCCACGTCTCA
GGAGCCTTTAATTTGCATGCCACGCCCCTCGACACGCCCGTCAAATTTAA
GGCCTGGCTCTCCCCCCGCGGCGAGGTCGCGCCCAACTACGTCACGTACA
CCATGGTACGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCCTGAACCTGCCCCTGGGCCCGGCGTGGGCGC
AGCCATAAAACCTTCCTACCCCGCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCAGCTGAACATCCCCCTGGGTCCTGCGGTGGTGCAGCCCTGCAAC
CCCGACCCGACCAATGAATGGACGCAGACCGGCCTCCCCCAGGCCAGCTG
GGTCGAGCTCCACGATGTGCCCAAGGTAGGACTACACCTCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCGCCCTGGTGGGATGTCTTTG
CCTGCCAGTCCCGAGGGCCATGGGGATCAATGCTCAGGCACAGAAGCTCA
GGCAAACGAATTCTCCCTCCCTCCCTCCCTCCCTCCCCCCTCCCCCCCTC
CCCCCTCCCTCTCTCAGGTGGTCTCCCCGGGCGAAAAGCTCACCCTCCGT
CTCGTCTATAACCTGCGGCCCGAGGATGAAAGGATAGTTAATGCCACCGT
TGCCATGTTCACTTGGGACTGGAAGGTGGGTCCTCCCTCCCTCCCTCGCC
TCCCTCCCTCTCTTCCCTCTCTTCCTCCCTCTCTCCTTCCCTCTCCCTCT
CCCTCTCCCTCTCCCTCTCCCTCTCCCTCTGCCTTGCCCCCATAGTCTAA
TTTCTCTGTTCTTTCAAATGGCTCGTCATCCCTCCCTCCCTCCTTCCCTC
CCTCCCTCCTTCGTCCCCTCTGTCCACGAAGCCCTGGAAACCGACCTCTC
CCTCCCTCCCTCCCTCCTCCCTCCCTCCCTCCAGACGCACGAGGCGAACG
AGATCGTGGCGGCCAAGGCCCAGCTCCCTCCCGTCTTTGAGGAGGCCCTC
ATCTCACTCACCATCCCCACAAATGCCCAGAGCGGGCCCGACGGCATTTT
TTTCGTGGCCAGCCTCGCGGGGATGCCGGGGGTGGAGGACCGCGTGTACC
AGGTGCGGGCGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGACGG
GAAGGGAGGGGCATGAGAACAAAGACACTCCACCTCCTTTGCATGCGCGA
TGACACGGATCGATCCTTCCGTTGACCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCGTCTCAGGTGGCTTTGGATGGCCCTATGCC
CATTCGTGAGGCTGAGGTCCTCGATGATGCGCAGGTCATTCCTGCTGCCA
CTGCTGCCCCTGCTGCCCACATGCTCCGGCACGGGCGCCAATAA back to topCoding sequence (CDS) from alignment at chr14:29332..32425+ >NO14G00100.1 ID=NO14G00100.1|Name=NO14G00100.1|organism=Nannochloropsis oceanica|type=CDS|length=1233bp|location=Sequence derived from alignment at chr14:29332..32425+ (Nannochloropsis oceanica)
ATGTACATCCGCACACTCTTCGTGTTACTTTTGGCCACGGTGGTTTCCGC
CCAGAAGACGATCCTGGCTCTCAAGCCGACGTTCAATGCGACCGCGGCCA
TCACGCTCGACTATATCGATCCCCCCGCAAACATCGTATTGAACACGAGG
GACTTCCCCATTAAGGTCGCATTTGCCAACGTTCCCGATGGCGAGGTGAT
GGACGTGCACGTAGATCTGATCGGCGACGGGGGCTATACCTGGTTCGGTG
GCGGGCTTGTTCAAGTCACAGGCCCCGCGGGCGAGGCCACGATCCCTATC
GAGGTCCGTGTCCCCTCCTACTACGGAGGGAATCTCTCCGTCCACGCGTT
CGTCACGCCGGCCGGCGGGGGCTTCGAGCAGCGCGTCGCCAATGCCCCTG
AGCTAGAGGTGGGCATCGACCATACCCCTGTCAATGCCATCGGCGTCCTC
TGTCAGCCGCGGCAGGTCCAGCCCGGCACCCCCTTCACGGTCAACCTGTG
GTTCACACAGACACACGCGCGGCCCATGGACCTCATCGCCGTGGCCCTAA
ACGCGGACACCAAGGACTACCTGGGCGGCTTCCAGGTGCCGGTGAAGGAG
CAGCAGGGCCACGTCTCAGGAGCCTTTAATTTGCATGCCACGCCCCTCGA
CACGCCCGTCAAATTTAAGGCCTGGCTCTCCCCCCGCGGCGAGGTCGCGC
CCAACTACGTCACGTACACCATGCTGAACATCCCCCTGGGTCCTGCGGTG
GTGCAGCCCTGCAACCCCGACCCGACCAATGAATGGACGCAGACCGGCCT
CCCCCAGGCCAGCTGGGTCGAGCTCCACGATGTGCCCAAGGTGGTCTCCC
CGGGCGAAAAGCTCACCCTCCGTCTCGTCTATAACCTGCGGCCCGAGGAT
GAAAGGATAGTTAATGCCACCGTTGCCATGTTCACTTGGGACTGGAAGAC
GCACGAGGCGAACGAGATCGTGGCGGCCAAGGCCCAGCTCCCTCCCGTCT
TTGAGGAGGCCCTCATCTCACTCACCATCCCCACAAATGCCCAGAGCGGG
CCCGACGGCATTTTTTTCGTGGCCAGCCTCGCGGGGATGCCGGGGGTGGA
GGACCGCGTGTACCAGGTGGCTTTGGATGGCCCTATGCCCATTCGTGAGG
CTGAGGTCCTCGATGATGCGCAGGTCATTCCTGCTGCCACTGCTGCCCCT
GCTGCCCACATGCTCCGGCACGGGCGCCAATAA back to top
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