NO14G00090, NO14G00090 (gene) Nannochloropsis oceanica

Overview
NameNO14G00090
Unique NameNO14G00090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3917
Alignment locationchr14:24907..28823 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:24907..28823 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO14G00090 vs. NCBI_GenBank
Match: EWM24791.1 (hypothetical protein Naga_102088g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 173.7 bits (439), Expect = 2.000e-39
Identity = 116/176 (65.91%), Postives = 139/176 (78.98%), Query Frame = 0 
Query:  395 AIVEQAQLLQSLYDEETARFEAGMRKMVRMVKDEAAASQAKEATARAETTQLVREYTLALEARDALLAXXXXXXXXXXXXXXXXXXXXXXGEAALLEAMKVVERLEREVEVKGHENAAWARKTQEKQQRIKELLASLASLESAKQEAVTEADRLLSVTQEEHVHAAARWQAEVASA 571
            A+VEQA+ LQSLYD ETARFEAGMRKMVRM+K+E AA  AKEA AR ET  ++REYT AL+A+D LL         XXXXXXXXXXXX  GEAALL+A++VV RLE EV  +  ENAAWARK +EKQ+RIKEL ++++SLE+AK+ A  EA RLL++TQEEH  AAA WQAE+ASA
Sbjct:    5 AVVEQARFLQSLYDNETARFEAGMRKMVRMLKEEEAAHLAKEAKARTETQDVIREYTEALKAKDGLLEAWNKKDEEXXXXXXXXXXXXAEGEAALLKALEVVARLEGEVARREQENAAWARKAEEKQKRIKELQSTISSLEAAKRTAGKEAARLLALTQEEHARAAASWQAEMASA 180
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BLAST of NO14G00090 vs. NCBI_GenBank
Match: EWM24790.1 (hypothetical protein Naga_100912g1 [Nannochloropsis gaditana])

HSP 1 Score: 104.4 bits (259), Expect = 1.500e-18
Identity = 121/324 (37.35%), Postives = 147/324 (45.37%), Query Frame = 0 
Query:   56 MHQQAPSLLLVAVLLLSHVSAFH-------LPLIGRRPLPLSSSTL----ISAPPSPSGKSTVEKPDPVQVLEYLRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVKEWKMKAFRLENELQATRRNMKEIENIRRDMAYRLKQAQTTAEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD------PPG-----KAALEARL---------------------------------KCFGEIERKMQGVEGGALAAVEAMKEETRRMEGCVRMAEEG 325
            M+Q+ PSLLL+ + +LS V AFH          + R+  PL SST     IS+P S S   + +K D VQVLEYL+S    XXXXXXXXXXXXXXXXXXX                                      VKEWK +A+RLE +LQATRRN+KEI NIRRD+A+RL+QAQT AE G                                           D       PG     + ALEARL                                 +CF  +E+ M+GVE GAL A+E M+ E +RMEGCVR AEEG
Sbjct:    1 MYQRLPSLLLL-LPVLSAVDAFHSLFPNRAFSRLSRQSKPLYSSTFASTTISSPSSHSPSVSEKKRDSVQVLEYLQSFLTSXXXXXXXXXXXXXXXXXXXPPLDPNLPSDVKAALDDVLAMVQAREEQVRNGDDGARAVKEWKTRAYRLEQDLQATRRNLKEITNIRRDLAHRLQQAQTVAEAGRRGNEERVRGMEEELAEKKRQLTELQEREASLAQAREAARRETDSLLAILSPGQEASRREALEARLASLSDSLPASRPLPEVEELVGEGEREAYRSWYARCFSSLEQDMKGVEDGALRAMEEMRGEVKRMEGCVRAAEEG 323
The following BLAST results are available for this feature:
BLAST of NO14G00090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM24791.12.000e-3965.91hypothetical protein Naga_102088g1, partial [Nanno... [more]
EWM24790.11.500e-1837.35hypothetical protein Naga_100912g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL137nonsL137Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006187NSK006187Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00090.1NO14G00090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_102088g1gene5692Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00090.1NO14G00090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00090 ID=NO14G00090|Name=NO14G00090|organism=Nannochloropsis oceanica|type=gene|length=3917bp
ATGCATGTCTTCATCGGAGACGTGGAGCCCGGTGTCGCCGTTGAGGGTGG
TGGAATGGACGTGTACCACGTGCTAGTGCATCTCCAAGCAGgtatcaaga
cacggtacaccatagaagatggacagtcggagtgctgcgcaacaagttga
acaaggcagtcgcagtcggacccctcgagtcgtccgtgcactaaaagcag
caaaatcctgcctattcatgcataccttgttgtgaaattaggtgctccct
caacatatcgtattattgattttaacaccaaattgccatctttcttctac
ccttcagttcaaaacagACTGCCTGGCCCGCCTCCTCATCTTCTATCGCC
TGCTGATACTGCTCCTCCCGCAGCACCGGAGCACCATTAGCATGCATCAG
CAAGCACCGTCACTTCTCTTGGTGGCGGTCCTACTCCTCTCTCATGTCAG
CGCATTCCATCTGCCTTTGATCGGCCGTCGCCCCCTCCCCCTTTCTTCCT
CCACGCTCATATCCGCCCCTCCATCTCCTTCTGGCAAGTCCACCGTAGAG
AAACCAGACCCCGTCCAAGTGTTGGAATACCTGCGTTCTTTCCTCGCCGC
ATCCTCCTCCTCCTCCTCCTCCTCTTCACCTTCGTCTTCTTCCCCTTCCT
CCATCCCGCACTCCCTCGATCCCTCCCTCCCTCCCGACGTCAAGACCGCC
CTAGCGGACATCTTGACCACCGTGCAGGCCCGGGAAGAGGAAGGGCGGGA
GGCAGGGAGGCAGGAAGGGGTGGTAAAAGAGTGGAAAATGAAAGCGTTCC
Ggtaagcgagtggttgaatgctcggattgggcgtgacgcgaggaaaggga
ggggatcgggagtgatgcctttatggatggggacatagtcaatttgcggt
taattgggctccagattaagggctaatgtctatcttttctatatctatcc
ctccctcccttcgtttctcttctcctatcttgagGCTGGAGAATGAGCTT
CAGGCAACGCGGCGGAACATGAAGGAGATCGAGAACATTCGGAGGGACAT
GGCCTACAGACTGAAGCAGGCGCAGACGACGGCGGAGGAGGGGAGAAAGG
GGAGCGAGGAGAAGATGGAGAGGATGGAGAGGGAACTGGAGGAAGGCAGG
AAGGGTTTGAAGATGTTGCAGGAGAAGGAGgtgaggaaggagggcaggag
ggagggagggagggagggagggaggaaggaaggaagaaggtggccagctt
tgaaggagagggaaatgactggctacatcatttaaacgactgaacctcgc
cttcttacacctctaatctcccttgctcatcccctttcctctctctttcc
ctccctcccacccttccttcccctcagCAAGAGATGGCCAGCCTCCTCTC
CATCCTCTCGTCCGCCTCCGACCCCCCTGGCAAGGCCGCGTTGGAAGCCC
GTCTgtcctccctcccttcctcgccccccccccctcctctttttccccct
cctcctccaccgtggaggcgtacggggcatggtacagCAAGTGCTTCGGG
GAGATCGAGCGGAAGATGCAGGGGGTGGAGGGGGGGGCTCTGGCGGCGGT
GGAGGCAATGAAGGAGGAGACGAGGCGGATGGAGGGCTGCGTCAGAATGG
CGGAGGAAGgtaggaaattagggagggagggagggaaggagggaaggagg
gagggaggcagaaatggaaattacttttcccagtagagttgtcacttgac
aagtcatcccccgtctcttccttcctccctccctccctccgtccctccct
ccctctacctcccagGTGCCAAGCGCGCGGAGCAAGAGGCTTCGGCACGC
GTGCTTGCCGCTCAAGCCGAGGTCGATCGCAGAGAGAAGGAGCTAGAGGA
GGCGCGACAGgtaacggcttctccctccctccctccctccctcctttcct
ccttatctccctcctttccttccatcgggcccgatagaactgagctgccc
ctcttttccctccttccctccttccctccttccctccttccctccctcta
gGCCTTGGAGGAGCAGGCATCCGCGCGGGTGGTGGCGGCCCGAGCGGATG
TGGCCCGGATGGAGGAGGAGGTGAAAGAGTGGCAGAAGgtgagggaggga
gggcgggagggtccggacgacaacaccctggatttgagctaggattgaca
tttggtgttttcttccgccctccctccctccctcagGCTGCGTCCCAAGA
GGCCATGGAGAGGGAGGCGATCGTGGAGCAGGCTCAGCTGCTGCAGTCGC
TCTACGACGAGGAGACGGCGCGCTTCGAGGCCGGCATGCGCAAGATGGTG
CGGATGGTCAAGGACGAGGCAGCCGCCAGCCAGGCCAAGgtacgtccctc
cctctttgtcggtcccttccttcctccgcctttccctcctttcttgatgg
catggcatgtctgaacgatcctcttctcaacctcctccctccctccctcc
tccagGAGGCAACTGCCCGGGCGGAGACGACGCAGCTCGTGCGGGAGTAC
ACGCTGGCACTGGAGGCCCGCGACGCCCTCCTGGCCGCATGGGCCGAGAA
AGAGGCGGCGTGGGGGGAGGAGAGGGAGGGATGGGGGGCGGAGCGGGCCC
GGGGGGAGGCGGCCTTGCTGGAGGCGATGAAGGTGGTGGAGAGGCTGGAA
AGGGAGGTGGAGGTCAAGGGCCACGAGAACGCGGCCTGGGCCCGGAAGAC
GCAGGAGgtatggagggagggagggagggagggcgggggtgattcccccc
cctccccccccatctcatggagtcaccttgctcttattgtccttccagag
atcattcgcccctcctacccttccaacctccatctcttccgcccgccctt
cctctttccccccctccgcagAAACAGCAACGCATCAAAGAGCTCCTCGC
CTCCCTGGCCTCTCTTGAGAGCGCCAAGCAAGAAGCCGTTACCGAGGCCG
ACCGTTTACTTTCCGTTACGCAAGAGGAGCACGTCCACGCCGCCGCCCGC
TGGCAAGCCGAGGTGGCTTCTGCGCGGGTCCAGGCACGAgtaagtctccc
ctcgctccctccctcccttcctccttccctccctcacttgtgaacgcata
ggaggttttgtgacattcagtcctccctccctccctccctccttccctcc
ctccctctctcccttccctcccccagGCCGACGTGGAGGCCGCGGCGACC
CGCGAACGCAACGCCCTGATTATGGTGAGCAGCGCGAGGGAGCAGAATCA
GCAGCTATCGGAGGAGGTGGCGCACCTGCGGCAGTCCCTAGGCTTAATGC
ACGCGGGGCAGGGGAGCGTAAGGGCGTTGCTGCGGCTGATGGTCAGGAGG
GTGGTGGAGAATGTGACGGGGAGGGTGAGGCAGATAAGGGGGGTGGGAGG
GAGGAGGGGAAGAGGAGGAGGAGGCTGGCCCTTGGTGGGGTGGAGCAGGA
CGGGAGGTGGGAGGGGCTGGAGGAGCTCGTGCCGGTGTATGAGGGGGAGA
AGGAGGGAGTGATGGTGGGGGCCTAGAATGGAGGGAGGAAGGGAGGGAGG
GAGGGTCCGGTGTACAGTGCGTAAAGAGGAGGTGGGTGGTGGTAGCGAGG
AATCCACGGCCAGCCCGACCTCTGTCCTCGAGGATGGCGAGTCCGGGTAT
CGTGGAGTGATGAGGAGGAGTGAGAGAGCCATGGGGTGTTTGTGAGGAGT
GAGGGAGCCATGGGGGGACTAGGAGGAAGGTGTACGAGGGAGGAGGAAGC
GCGAAAAAGATAATTTGACCGCAGCGAAAGATAAAGAAAAAGATGGAGGG
ACAGCAGCGATGGATAAAGAAAAAGATGGAAGGACAGCCGCGACAGATAA
AGAAAAAGATGGAGGGA
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protein sequence of NO14G00090.1

>NO14G00090.1-protein ID=NO14G00090.1-protein|Name=NO14G00090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=687bp
MHVFIGDVEPGVAVEGGGMDVYHVLVHLQADCLARLLIFYRLLILLLPQH
RSTISMHQQAPSLLLVAVLLLSHVSAFHLPLIGRRPLPLSSSTLISAPPS
PSGKSTVEKPDPVQVLEYLRSFLAASSSSSSSSSPSSSSPSSIPHSLDPS
LPPDVKTALADILTTVQAREEEGREAGRQEGVVKEWKMKAFRLENELQAT
RRNMKEIENIRRDMAYRLKQAQTTAEEGRKGSEEKMERMERELEEGRKGL
KMLQEKEQEMASLLSILSSASDPPGKAALEARLKCFGEIERKMQGVEGGA
LAAVEAMKEETRRMEGCVRMAEEGAKRAEQEASARVLAAQAEVDRREKEL
EEARQALEEQASARVVAARADVARMEEEVKEWQKAASQEAMEREAIVEQA
QLLQSLYDEETARFEAGMRKMVRMVKDEAAASQAKEATARAETTQLVREY
TLALEARDALLAAWAEKEAAWGEEREGWGAERARGEAALLEAMKVVERLE
REVEVKGHENAAWARKTQEKQQRIKELLASLASLESAKQEAVTEADRLLS
VTQEEHVHAAARWQAEVASARVQARADVEAAATRERNALIMVSSAREQNQ
QLSEEVAHLRQSLGLMHAGQGSVRALLRLMVRRVVENVTGRVRQIRGVGG
RRGRGGGGWPLVGWSRTGGGRGWRSSCRCMRGRRRE*
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Synonyms
Publications