NO13G03430, NO13G03430 (gene) Nannochloropsis oceanica

Overview
NameNO13G03430
Unique NameNO13G03430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1650
Alignment locationchr13:1025650..1027299 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:1025650..1027299 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014876DEK_C
Homology
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BLAST of NO13G03430 vs. NCBI_GenBank
Match: GAQ84047.1 (hypothetical protein KFL_001740060 [Klebsormidium nitens])

HSP 1 Score: 67.0 bits (162), Expect = 2.100e-7
Identity = 48/147 (32.65%), Postives = 76/147 (51.70%), Query Frame = 0 
Query:  157 RERKAVETLIVRDPRDTQPVTIKQGKGSKKLGEMETFSREIGKIRNKDPFLKVLHGLCFGRGQAKATEVKGRLREFSGLVYEEGEEERREGDLAREKVEEKARRMTVAELKRAWGVLGVRTREGGRAGGKKEELVEELVNWLELPRE 304
            RERK V+ L V +P+    + IK+GKG K L ++   + ++ K+   D  L   H + F R + KATE+K  ++EFSG V+E+ +E        R   +E+ +R+T   L +    L + T+      G KEE V     +LE P +
Sbjct:  154 RERKEVQRLTVGEPKQEIEIVIKKGKG-KPLKDIPNVAFKLSKLTRSDEILSQAHMIMFKR-RGKATELKKHIQEFSGFVFEDDKE--------RTAAKERVQRLTKEGLNQLLDFLDLPTK------GTKEEQVTRAFEFLEKPHK 284
The following BLAST results are available for this feature:
BLAST of NO13G03430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
GAQ84047.12.100e-732.65hypothetical protein KFL_001740060 [Klebsormidium ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR048ncniR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR096ngnoR096Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G03430.1NO13G03430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|247157gene_8955Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G03430.1NO13G03430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G03430 ID=NO13G03430|Name=NO13G03430|organism=Nannochloropsis oceanica|type=gene|length=1650bp
ATGGAAGCGCCTAGCAGCCCCATAGACAAGGAGCCTGAGATGAAGAAAGA
TGCTGCCGCTGCAATTGCTCCTGTCCCTCCTTGTCCCCCTTCTTCTGCCG
TAAATTATTGGGAAGCTTCCCCTGAGAAAGAGAAAGAAATTAAGCCGGCT
GCGGCAGACGCCATAGAAGGGGAGAAGAAAGACACCAGTGCTGCCGCTAT
TTATTCTCCTGTCGCTCCTGCTGCTCCTGTTGCTCCCCGATGTTCTCCTT
CCCCTGCCAAGAAACAGCGGGAAGCTTACCCTGCGGAAAAGGCGGCAGCT
AACACCATAGACAAGAAGGAGGATGAGGCGAGGGAAGAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCCCCAAAGACCCACGCCCATGCCCACCACGGCCA
GCGCCACCCTCCCTCCCTCCCCCCCTGCCCCTGGGCACTACTGGTCCGTC
CCCTCCGCCGGCGCTAAGCGGGAACGGAAGGCAGTCGAAACCCTCATCGT
TCGTGATCCCCGTGACACGCAGCCTGTCACCATCAAGCAGGGGAAAGGTT
CGAAGAAGCTGGGGGAGATGGAGACCTTTAGTCGAGAGATAGGGAAGATC
AGAAACAAGGACCCGTTTCTGAAGGTGCTGCACGGGCTGTGCTTTGGCCG
AGGGCAGGCCAAGGCTACCGAGGTAAAGGGACGCCTGAGGGAGTTCTCGG
GTTTGGTCTACGAAGAGGGGGAGGAGGAAAGGAGGGAAGGAGACTTGGCC
CGGGAAAAGGTGGAGGAGAAGGCGAGGAGAATGACAGTCGCAGAGTTGAA
GAGGGCCTGGGGAGTGCTGGGGGTGAGGACGAGAGAGGGAGGGAGGGCGG
GGGGAAAAAAGGAGGAGCTTGTGGAGGAGCTGGTAAACTGGCTGGAGTTG
CCTAGGGAGGAGGACGGAAGAAGGGAGGGAGGGAAGAAGGGGAGGAAGGT
GGCGGTGACGAAGAGGAGAAAGAGAAAGAGCAGTGGGGCGAAAGGAGAAG
AGCATGTGGAGGAGGAGGAGGGAAAAGAGGAGGAGGAGCAGCAGATGCGG
CAGAAAAAGATGAAGACGCTTGCGGTGGCTTTGAAGACGAAGGGAAAGAA
GAAGGAGACGAAGAAGAGGAGGAATTGCAAGCTGTTCAGTGCGTCGGCCA
ATATGCTGAGGAGAAAGGGGAAGGGAGGGAAGGAGGGGGGAAGGAAGGGG
TGGGGGGAGAAAATAGAGAATAAGGAAGAGGAGAAAGAAGAGGAAAAGGA
GGAGGAAGAATGTGACGATGAGATGAATGGATCGAAGAGAAGGAAGAAAA
AGGTGGTGGGGGCATCGGAAAAGGAGAAGGAAAAAGAGGAGGGAGTGGAG
GAGGAGGAGGAGGAGGAGGAAGAGGAAGGAGGAATGAATATAAGGAAAGG
CGAGAAAGAAGTAGAGAAGGAAGTAGAGGAGGGGGAGGTGAGGGAAGGTG
AAAAGGATAAAGAAGAGGAGAATAGGGGCGTCCCTACTGCTGTGCTGGAG
GAAGGGGTGATGAATATCCTTGCCGCTGCTGACCCTGCCGTCGTGACGAT
CAAGATGGTGATGGCGCAGCTGCACGAGAATCTGGGATGGGACGTGAGTG
CTCACAAGCCGCTCATTACGGACATTGTCATGCGAAACCTCGAAAGCTGA
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protein sequence of NO13G03430.1

>NO13G03430.1-protein ID=NO13G03430.1-protein|Name=NO13G03430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=550bp
MEAPSSPIDKEPEMKKDAAAAIAPVPPCPPSSAVNYWEASPEKEKEIKPA
AADAIEGEKKDTSAAAIYSPVAPAAPVAPRCSPSPAKKQREAYPAEKAAA
NTIDKKEDEAREEQQQQQQQQQPQRPTPMPTTASATLPPSPPAPGHYWSV
PSAGAKRERKAVETLIVRDPRDTQPVTIKQGKGSKKLGEMETFSREIGKI
RNKDPFLKVLHGLCFGRGQAKATEVKGRLREFSGLVYEEGEEERREGDLA
REKVEEKARRMTVAELKRAWGVLGVRTREGGRAGGKKEELVEELVNWLEL
PREEDGRREGGKKGRKVAVTKRRKRKSSGAKGEEHVEEEEGKEEEEQQMR
QKKMKTLAVALKTKGKKKETKKRRNCKLFSASANMLRRKGKGGKEGGRKG
WGEKIENKEEEKEEEKEEEECDDEMNGSKRRKKKVVGASEKEKEKEEGVE
EEEEEEEEEGGMNIRKGEKEVEKEVEEGEVREGEKDKEEENRGVPTAVLE
EGVMNILAAADPAVVTIKMVMAQLHENLGWDVSAHKPLITDIVMRNLES*
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Synonyms
Publications