NO13G03180, NO13G03180 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G03180 vs. NCBI_GenBank
Match: EWM20746.1 (membrane protein- a permease [Nannochloropsis gaditana]) HSP 1 Score: 279.6 bits (714), Expect = 2.100e-71 Identity = 147/192 (76.56%), Postives = 159/192 (82.81%), Query Frame = 0 Query: 346 IRRYIRLKTLVCVLIAIFVGVCLSLLRVPFAGLFSLVTFVLNYIPNFGPIVATLLPLPLVLFSPDLSDAAKVLAFFLPSLGHVFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLQHPYARVAVRIMEGRILDFDFDGHTSIINTGFKDKEGPR-HHQRSASEVVSVQP 537 +RRYIRLKT VCVLIA+ VG CLSLLRVPF+GLF L+TFVLNYIPNFGPIVATLLPLPLV+FSPDLS AKVLA LPSLGH FVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNL+HPYARVA RI+EGR+ D DG EGPR ++Q +E +QP Sbjct: 11 LRRYIRLKTFVCVLIAVLVGCCLSLLRVPFSGLFGLLTFVLNYIPNFGPIVATLLPLPLVVFSPDLSVTAKVLALVLPSLGHFFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLEHPYARVAARIIEGRLFDAGLDGRNG-GKPPCAGSEGPRGYYQNRTAEETPIQP 201
BLAST of NO13G03180 vs. NCBI_GenBank
Match: CBJ31878.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 243.0 bits (619), Expect = 2.100e-60 Identity = 125/283 (44.17%), Postives = 187/283 (66.08%), Query Frame = 0 Query: 219 GAWERMHCPRPLAVMLAIALAMGVFALFGMIIYHSIQRLQKDWPIYEMGAEQAVQRLNAGLAKLHVSLNDDLVPYLMDNLKSDIPALVSDVWVAVANGILVLIFLVYLLGSRPQPLPPGVWRKIDIHIRRYIRLKTLVCVLIAIFVGVCLSLLRVPFAGLFSLVTFVLNYIPNFGPIVATLLPLPLVLFSPDLSDAAKVLAFFLPSLGHVFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLQHPYARVAVRIMEGRILD 502 G + + PR LAV+LAI++ + A G I+Y S+ LQ ++ YE AE+ ++ L K + S+N+D +P+ + +L+ +P L+ + ++ LV IFLVYLL S +P+ VW ID+ IRRYIRLKT+V +L A V L +L V A +F ++TFVLN++PN GP++AT LP+PL +F PD+S +VLAF LP+ H+ +G +EP LFGE E+ P+++LLSLAFW LWG+ GMIL+VP++ RIVC +L HPYA+ +R++EG + + Sbjct: 68 GLFNKPVVPRWLAVILAISVVLTALATVGAIVYGSVLSLQANFGKYETEAERMASVIDKRLHKYNYSINEDFMPFAIGSLRERVPRLLKLILSSLEYFFLVAIFLVYLLISPVKPIKSSVWGIIDLQIRRYIRLKTMVGMLAATVVTTMLWVLGVQMAYVFGIITFVLNFVPNLGPMIATFLPMPLAIFDPDMSHLNQVLAFVLPTTAHLVIGNLVEPGLFGESFELSPVVVLLSLAFWGSLWGIPGMILAVPMVVITRIVCDHLDHPYAKTLMRLLEGNVFE 350
BLAST of NO13G03180 vs. NCBI_GenBank
Match: XP_007515733.1 (membrane protein [Bathycoccus prasinos] >CCO14612.1 membrane protein [Bathycoccus prasinos]) HSP 1 Score: 161.8 bits (408), Expect = 6.300e-36 Identity = 97/280 (34.64%), Postives = 156/280 (55.71%), Query Frame = 0 Query: 223 RMHCPRPLAVMLAIALAMGVFALFGMIIYHSIQRLQKDWPIYEMGAEQAVQRLNAGLAKLHVSLNDDLVPYLMD-----NLKSDIPALVSDVWVAVANGILVLIFLVYLLGSR-----PQPLPPGVWRKIDIHIRRYIRLKTLVCVLIAIFVGVCLSLLRVPFAGLFSLVTFVLNYIPNFGPIVATLLPLPLVLFSPDLSDAAKVLAFFLPSLGHVFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLQ--HPYARV 491 R P ++ +A+ +G+ +I HS++ L +D YE + R L++ ++ + D + L D + A++ V ++N +LVLIF+VYLL R + +P GVW +I+ I+RYI LK V L L V A +F ++ FV+N+IP+ GPI+AT+LPLP+VL S D+ LA LP + H +G +EP+L G HL++HPI +LL L FW +LWG+ GM+L+ P+ A ++I+C++++ HP A + Sbjct: 96 RAKVPHGASITIALFFGLGILCSLLFLISHSVKDLVQDAKKYERYVVRLTNRAGETLSRKNIDM-DVIEAQLQDIPLAKMVAQSTHAMLQAVLDLLSNVVLVLIFVVYLLEGRRRQKVERRVPGGVWTRIETRIKRYILLKFFVSTLNGFIAASIYYALNVELAMVFGVLHFVMNFIPHVGPIIATVLPLPVVLVSKDIHFLHVTLAILLPGMTHFTIGNVVEPKLMGGHLDLHPITVLLCLIFWGMLWGIPGMVLAAPITASLKILCESVEVMHPLALI 374
BLAST of NO13G03180 vs. NCBI_GenBank
Match: XP_005824226.1 (hypothetical protein GUITHDRAFT_89764 [Guillardia theta CCMP2712] >EKX37246.1 hypothetical protein GUITHDRAFT_89764 [Guillardia theta CCMP2712]) HSP 1 Score: 155.6 bits (392), Expect = 4.500e-34 Identity = 127/442 (28.73%), Postives = 202/442 (45.70%), Query Frame = 0 Query: 78 ENLVAVCLLIMALLCLGIILFVLRPILIPFAVSLLFYYLLQPVVNTLNKPPAICCRELYVGCAELGAPVSDEGEGSMASSSIGGRFLSRAVGGLRRRAGYDTVASDEEEXXXXXXXXXXXXXXXTSPLSTFTEGGSVVGEGGAWERMHCPRPLAVMLAIALAMGVFALFGMIIYHSIQRL-------------QKDWPIYEMGAEQAVQRLNAGLAK--LHVSLNDDLVPYLMDNLKSDIPALVSDVWVAVANGILVLIFLVYLL---GSRP--QPLPPGVWRKIDIHIRRYIRLKTLVCVLIAIFVGVCLSLLRVPFAGLFSLVTFVLNYIPNFGPIVATLLPLPLVLFSPDLSDAAKVLAFFLPSLGHVFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLQHPYARVAVRIMEGRI 500 +++ CL ++AL+ G IL LR +LIPF +++ +Y L P+V+ L+ G + P+ + S SI R PRP+AV++A+ A + A+ ++I+ S+ L DW + G + N G+A+ LH S +L + + + V + + NG L+L+F VYLL S P + GV +ID+ ++RYI K L+ I +G+ L +L+V A +F L+ +LN+IPN G +++TLLP+P+V+F P + LAF +PS H G +EPR+ G +++HP+++LLSL W LWGV GMILSVP+ A ++I Q+L HP R + EGR+ Sbjct: 20 KHIHTACLFLLALVAAGTILVHLRSVLIPFVLAMGLFYSLVPIVDMLSDQTWQRTPRARTGAVGVVPPI------VVVSESISSLLQCR-----------------------------------------------------------LPRPMAVVVALMFACVLIAMILVVIFSSVNELAAHAERYSARVRSMADW-VIRWGKLMGMDISNQGIAEKLLHHS------AFLSEMVVKSVSLAVEE----MTNGFLMLLFTVYLLLGYASSPPDEKRVSGVRAEIDMQVKRYIGFKVLLSTTTGIVIGISLLILKVDLALVFGLLAGLLNFIPNVGGVISTLLPMPVVIFDPSKTWLDIFLAFAIPSFVHAVTGNIIEPRVLGGAMDLHPVVVLLSLMLWGSLWGVVGMILSVPITAVIKICLQSLDHPLPRFLAGMFEGRV 385
BLAST of NO13G03180 vs. NCBI_GenBank
Match: WP_013629494.1 (AI-2E family transporter [Rubinisphaera brasiliensis] >ADY60773.1 protein of unknown function UPF0118 [Rubinisphaera brasiliensis DSM 5305]) HSP 1 Score: 145.6 bits (366), Expect = 4.700e-31 Identity = 87/273 (31.87%), Postives = 142/273 (52.01%), Query Frame = 0 Query: 223 RMHCPRPLAVMLAIALAMGVFALFGMIIYHSIQRLQKDWPIYEMGAEQAVQRLNAGLAKLHVSLNDDLV----------PYLMDNLKSDIPALVSDVWVAVANGILVLIFLVY-LLGSRPQPLPPGVWRKIDIHIRRYIRLKTLVCVLIAIFVGVCLSLLRVPFAGLFSLVTFVLNYIPNFGPIVATLLPLPLVLFSPDLSDAAKVLAFFLPSLGHVFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLQ 485 R+H R LA + + + + G ++ S L++ P Y ++ V R+ L + + V +L L I L S + + G++VLI++ + LLG + P W KID IR Y+RLKT+V ++ + G L++ +P A F ++ F+LNYIPN GP+VAT+LP+PL++ +P+ V S G +EP+L G+ ++HPI+ILL+L FW +LWG+ GM L+ P+ A +++V Q Sbjct: 53 RLHVNRLLAAGITFVAGLVIMFVLGSALWASTVELRQSAPAYRQRIQELVDRVENAFPNLPMQKKAEAVTPEKNAEAIDAFLDAMLHKGIATLSSAMLYLITTGVVVLIYVFFMLLGQSTESSPSATWTKIDDQIREYLRLKTVVSLITGLIFGGVLAMFGIPMALTFGVLAFLLNYIPNIGPLVATVLPVPLIILNPEAHLLWIVAVIGSISAIQFVSGNIIEPKLMGDSTDLHPIVILLALMFWGMLWGIVGMFLATPITAGLKLVLDQFQ 325
BLAST of NO13G03180 vs. NCBI_GenBank
Match: XP_024574896.1 (transmembrane protein [Plasmopara halstedii] >CEG38527.1 transmembrane protein [Plasmopara halstedii]) HSP 1 Score: 144.8 bits (364), Expect = 8.000e-31 Identity = 90/262 (34.35%), Postives = 151/262 (57.63%), Query Frame = 0 Query: 226 CPRPLAVMLAIALAMGVFALFGMIIYHSIQRLQKDWPIYEMGAEQAVQRLNAGLAKLHVSLNDDLVPYLMDNLKSDIPALVSDVWVAVANGILVLIFLVYLLGSRPQPLPP-GVWRKIDIHIRRYIRLKTLVCVLIAIFVGVCLSLLRVPFAGLFSLVTFVLNYIPNFGPIVATLLPLPLVLFSPD--LSDAAKVLAFFLPSLGHVFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLQ 485 C R LA +A++L F L G I S+ L D Y+ G V + L ++ + +N + L DN+ +V++ ++ + LI+L Y L +R + GVW KID I+R++ LK + + +A+ V + L V A ++ ++TF+LN+IPN G ++A++ P+ ++ +P ++ K LA FLP H+FVG ++EP++FG LE+ P+I++LSL+ W +LWGV GM+LSVPL A +I+ +L+ Sbjct: 151 CSRALASFVAVSLVCVFFGLLGYITVLSVHAL--DASAYQTGYNSLVSGVEHLLGQIGLPVN--ITTTLHDNVDKLARFVVTETMDLLSVMFVTLIYLTYFLCTRTRASDAGGVWSKIDHDIQRFVTLKCFLSLFVALLVTIVYVSLNVGLAVVWGMLTFILNWIPNVGAMIASVAPICIIAITPSELMNPMEKFLAMFLPMCFHMFVGNFVEPKVFGRKLEIDPVIVILSLSAWGLLWGVVGMMLSVPLTAAAKIMLSHLK 408
BLAST of NO13G03180 vs. NCBI_GenBank
Match: OQR89359.1 (transmembrane protein [Thraustotheca clavata]) HSP 1 Score: 144.4 bits (363), Expect = 1.000e-30 Identity = 89/264 (33.71%), Postives = 152/264 (57.58%), Query Frame = 0 Query: 226 CPRPLAVMLAIALAMGVFALFGMIIYHSIQRLQKDWPIYEMGAEQAVQRLNAGLAKLHVSLNDDLVPYLMDNLKSDIPALVSDVWVAVANGILVLIFLVYLLGSRPQPLPP-GVWRKIDIHIRRYIRLKTLVCVLIAIFVGVCLSLLRVPFAGLFSLVTFVLNYIPNFGPIVATLLPLPLVLFSPD-----LSDAAKVLAFFLPSLGHVFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNL 484 C R + + A+++ F L G I SI L+ Y+ G VQ + ++ V +N + L DN+ ++++V ++ + +I+L Y L +R + GVW KID+ I+R++ LK + + +A+ V + L V A + ++TF+LN+IPN G ++A+ LPL +++ SP+ +S K LA LP H+FVG ++EP++FG LE+ P+++++SL+ W +LWGV GM+LSVPL A +I+C +L Sbjct: 177 CSRAFSSLCAVSVVCLFFFLLGYIAVLSIHALEV--TKYQEGYTAFVQHVEVLSQQVGVPMN--ITTTLHDNVDKFARLVLTEVMDLLSTLFVTMIYLTYFLCTRTRASDAGGVWSKIDMDIQRFVTLKCYLSLFVALLVTIVYVSLNVGLAIFWGILTFILNWIPNVGAMIASFLPLLIIVISPEGPDGLMSSMDKFLAMILPMSFHMFVGNFIEPKVFGRKLEMDPVVVIISLSAWGLLWGVVGMMLSVPLTASFKIMCSHL 436
BLAST of NO13G03180 vs. NCBI_GenBank
Match: WP_105349791.1 (AI-2E family transporter [Blastopirellula marina] >PQO40283.1 AI-2E family transporter [Blastopirellula marina]) HSP 1 Score: 143.7 bits (361), Expect = 1.800e-30 Identity = 81/219 (36.99%), Postives = 125/219 (57.08%), Query Frame = 0 Query: 287 NDDLVPYLMDNLKSDIPALVSDVWVAVANGILVLIFLVY-LLGSRPQPLPPGVWRKIDIHIRRYIRLKTLVCVLIAIFVGVCLSLLRVPFAGLFSLVTFVLNYIPNFGPIVATLLPLPLVLFSPDLSDAAKVLAFFLPSLGHVFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLQHPYARVAVRIMEGRILDFDF 505 +D + + D +K+ + L + + +V+IFL + LLGS LP W++ID IR YI K+L+ + G L L +P A +F+L+ F+ N+IPN GPI+A LLPLPL++ P+++ L L S + G +EPR+ G+ +VHPI ILL+L FWS++WG+ GM L+VP+ A M+I+ + R ++ GRI F F Sbjct: 173 HDMVSEMINDMVKNSLSKLTDSMSYVIQTSTMVVIFLFFLLLGSSQATLPENTWQEIDAKIREYILTKSLISFFTGLAFGFVLWLFGIPLAAVFALLAFLFNFIPNIGPILACLLPLPLIVLDPEMTWWGMTLVIVLSSAVQIISGNVIEPRMMGDSFDVHPIAILLALMFWSLIWGMIGMFLAVPMTAIMKILFAKFE--MTRPLADLLAGRIDRFSF 389
BLAST of NO13G03180 vs. NCBI_GenBank
Match: XP_008607694.1 (hypothetical protein SDRG_03828 [Saprolegnia diclina VS20] >EQC38870.1 hypothetical protein SDRG_03828 [Saprolegnia diclina VS20]) HSP 1 Score: 143.3 bits (360), Expect = 2.300e-30 Identity = 89/265 (33.58%), Postives = 152/265 (57.36%), Query Frame = 0 Query: 226 CPRPLAVMLAIALAMGVFALFGMIIYHSIQRLQKDWPIYEMGAEQAVQRLNAGLAKLHVSLNDDLVPYLMDNLKSDIPALVSDVWVAVANGILVLIFLVYLLGSRPQPLPP-GVWRKIDIHIRRYIRLKTLVCVLIAIFVGVCLSLLRVPFAGLFSLVTFVLNYIPNFGPIVATLLPLPLVLFSPD-----LSDAAKVLAFFLPSLGHVFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLQ 485 C R + + A+++ F L G I SI L+ Y+ G VQ + ++ V +N + L DN+ ++++V ++ + +I+L Y L +R + GVW KID I+R++ LK + + +A+ V + L V A + ++TF+LN+IPN G ++A+ LPL +++ SP+ +S K LA LP H+FVG ++EP++FG LE+ P+++++SL+ W +LWGV GM+LSVPL A +I+C +L+ Sbjct: 275 CSRAFSSLCAVSVVCLFFFLLGYIAVLSIHALEV--TKYQEGYTAFVQHVEVLSQQVGVPMN--ITTTLHDNVDKLARLVLTEVMDLLSTLFVTMIYLTYFLCTRTRASDAGGVWSKIDNDIQRFVTLKCYLSLFVALLVTIVYVSLNVGLAIFWGILTFILNWIPNVGAMIASFLPLCIIMISPEGPNGLMSPMDKFLAMVLPMCFHMFVGNFIEPKVFGRKLEMDPVVVIISLSAWGLLWGVVGMMLSVPLTAAFKIMCSHLK 535
BLAST of NO13G03180 vs. NCBI_GenBank
Match: XP_012199720.1 (hypothetical protein SPRG_05614 [Saprolegnia parasitica CBS 223.65] >KDO29662.1 hypothetical protein SPRG_05614 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 143.3 bits (360), Expect = 2.300e-30 Identity = 89/265 (33.58%), Postives = 152/265 (57.36%), Query Frame = 0 Query: 226 CPRPLAVMLAIALAMGVFALFGMIIYHSIQRLQKDWPIYEMGAEQAVQRLNAGLAKLHVSLNDDLVPYLMDNLKSDIPALVSDVWVAVANGILVLIFLVYLLGSRPQPLPP-GVWRKIDIHIRRYIRLKTLVCVLIAIFVGVCLSLLRVPFAGLFSLVTFVLNYIPNFGPIVATLLPLPLVLFSPD-----LSDAAKVLAFFLPSLGHVFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLQ 485 C R + + A+++ F L G I SI L+ Y+ G VQ + ++ V +N + L DN+ ++++V ++ + +I+L Y L +R + GVW KID I+R++ LK + + +A+ V + L V A + ++TF+LN+IPN G ++A+ LPL +++ SP+ +S K LA LP H+FVG ++EP++FG LE+ P+++++SL+ W +LWGV GM+LSVPL A +I+C +L+ Sbjct: 134 CSRAFSSLCAVSVVCLFFFLLGYIAVLSIHALEV--TKYQEGYTAFVQHVEVLSQQVGVPMN--ITTTLHDNVDKLARLVLTEVMDLLSTLFVTMIYLTYFLCTRTRASDAGGVWSKIDNDIQRFVTLKCYLSLFVALLVTIVYVSLNVGLAIFWGILTFILNWIPNVGAMIASFLPLCIIMISPEGPNGLMSPMDKFLAMVLPMCFHMFVGNFIEPKVFGRKLEMDPVVVIISLSAWGLLWGVVGMMLSVPLTAAFKIMCSHLK 394 The following BLAST results are available for this feature:
BLAST of NO13G03180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G03180 ID=NO13G03180|Name=NO13G03180|organism=Nannochloropsis oceanica|type=gene|length=4174bpback to top protein sequence of NO13G03180.1 >NO13G03180.1-protein ID=NO13G03180.1-protein|Name=NO13G03180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=561bpback to top Synonyms
Publications
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