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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:924470..928643 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G03180.1 vs.
Match: EWM20746.1 (membrane protein- a permease [Nannochloropsis gaditana]) HSP 1 Score: 279.6 bits (714), Expect = 2.100e-71 Identity = 147/192 (76.56%), Postives = 159/192 (82.81%), Query Frame = 0
Query: 346 IRRYIRLKTLVCVLIAIFVGVCLSLLRVPFAGLFSLVTFVLNYIPNFGPIVATLLPLPLVLFSPDLSDAAKVLAFFLPSLGHVFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLQHPYARVAVRIMEGRILDFDFDGHTSIINTGFKDKEGPR-HHQRSASEVVSVQP 537
+RRYIRLKT VCVLIA+ VG CLSLLRVPF+GLF L+TFVLNYIPNFGPIVATLLPLPLV+FSPDLS AKVLA LPSLGH FVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNL+HPYARVA RI+EGR+ D DG EGPR ++Q +E +QP
Sbjct: 11 LRRYIRLKTFVCVLIAVLVGCCLSLLRVPFSGLFGLLTFVLNYIPNFGPIVATLLPLPLVVFSPDLSVTAKVLALVLPSLGHFFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLEHPYARVAARIIEGRLFDAGLDGRNG-GKPPCAGSEGPRGYYQNRTAEETPIQP 201
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G03180.1 ID=NO13G03180.1|Name=NO13G03180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1683bp ATGGACCCTTTGCGTCCTGGACCCGGGGGGAGCACCAGCAGCGGCACTAT CTCCCTAGGCGTCTCAGAAGCTCGCTTTCCCCCTACCTACGGTTCTGTGG ACGACGGAGGCATCGGCATGGTCAACAGAAGTGGATGGAGGGATGGGGGA AAGGAGAGCGGGTTTCCGCCTTTGCGTCGATCGTACTCGCTGAGCGCGAT TAGAGAGGGTGTACCAACCCTTGGTCGGCACGAGAACCTGGTAGCGGTCT GCTTGCTCATTATGGCGTTGCTTTGCCTAGGCATCATCCTCTTTGTCCTG CGGCCTATTCTCATCCCCTTCGCCGTCTCCCTCCTTTTCTACTACCTTCT CCAACCCGTCGTCAACACCCTCAACAAACCTCCTGCCATTTGCTGTCGGG AGTTGTATGTGGGCTGTGCGGAACTAGGGGCCCCTGTGAGCGACGAAGGG GAAGGAAGCATGGCTTCCTCTTCAATTGGGGGCAGGTTTCTCTCCCGAGC CGTCGGAGGGCTGCGACGACGCGCCGGATACGATACCGTCGCCTCCGACG AGGAGGAAGGGAAAGAGGGAGGGCGGGAGGGAGGGAGGGGGGGAGGGAGG ACCACATCGCCCCTGTCGACCTTCACGGAAGGAGGGAGTGTGGTGGGGGA GGGAGGCGCATGGGAGAGGATGCACTGCCCGCGGCCTCTCGCTGTCATGC TGGCGATTGCCTTGGCCATGGGCGTCTTCGCCTTGTTCGGGATGATCATT TATCACTCCATTCAACGGCTTCAGAAGGACTGGCCCATATACGAAATGGG TGCCGAGCAGGCCGTACAACGGCTCAATGCCGGGCTGGCCAAGTTGCATG TCTCATTAAATGATGACCTGGTTCCCTACCTGATGGACAACCTCAAGAGC GATATCCCCGCCCTTGTATCGGACGTCTGGGTCGCCGTGGCCAATGGCAT CCTCGTCCTCATTTTCCTCGTCTACCTCCTGGGCTCCCGGCCTCAGCCGC TGCCTCCGGGCGTGTGGCGGAAGATCGACATCCATATCAGGCGCTACATA CGCCTCAAAACCCTCGTATGCGTCCTCATCGCCATCTTCGTCGGCGTCTG CCTCTCCCTCCTCCGGGTACCGTTCGCTGGCCTCTTCAGCCTTGTCACCT TCGTCTTGAACTACATCCCAAATTTCGGGCCCATTGTCGCCACCCTCCTC CCCCTCCCCCTCGTCCTCTTCTCCCCCGACCTCTCCGACGCGGCCAAAGT CCTGGCCTTCTTCCTTCCCTCCCTCGGCCACGTCTTCGTCGGGTACTACC TGGAGCCGCGCCTGTTTGGGGAGCACCTTGAAGTCCATCCAATCATCATC CTCCTCTCCCTCGCCTTTTGGTCCGTCCTCTGGGGCGTCTCCGGCATGAT TCTCTCCGTGCCTCTCATCGCCTGCATGCGCATCGTCTGCCAGAACCTGC AACACCCTTACGCGAGGGTTGCCGTCCGGATCATGGAAGGGCGCATTTTG GACTTTGACTTTGATGGGCACACTAGCATCATTAACACCGGCTTTAAGGA CAAGGAGGGACCCAGGCATCATCAAAGATCAGCATCGGAAGTTGTTTCTG TGCAGCCTGCGTGCTCGGCGCCGTTTTTGGGAGGAGGAGGAGGGGGAGAG AGAATAGGTGCAGCATATAAACATGCACTTTAG back to topprotein sequence of NO13G03180.1 >NO13G03180.1-protein ID=NO13G03180.1-protein|Name=NO13G03180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=561bp MDPLRPGPGGSTSSGTISLGVSEARFPPTYGSVDDGGIGMVNRSGWRDGG KESGFPPLRRSYSLSAIREGVPTLGRHENLVAVCLLIMALLCLGIILFVL RPILIPFAVSLLFYYLLQPVVNTLNKPPAICCRELYVGCAELGAPVSDEG EGSMASSSIGGRFLSRAVGGLRRRAGYDTVASDEEEGKEGGREGGRGGGR TTSPLSTFTEGGSVVGEGGAWERMHCPRPLAVMLAIALAMGVFALFGMII YHSIQRLQKDWPIYEMGAEQAVQRLNAGLAKLHVSLNDDLVPYLMDNLKS DIPALVSDVWVAVANGILVLIFLVYLLGSRPQPLPPGVWRKIDIHIRRYI RLKTLVCVLIAIFVGVCLSLLRVPFAGLFSLVTFVLNYIPNFGPIVATLL PLPLVLFSPDLSDAAKVLAFFLPSLGHVFVGYYLEPRLFGEHLEVHPIII LLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLQHPYARVAVRIMEGRIL DFDFDGHTSIINTGFKDKEGPRHHQRSASEVVSVQPACSAPFLGGGGGGE RIGAAYKHAL* back to topmRNA from alignment at chr13:924470..928643+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G03180.1 ID=NO13G03180.1|Name=NO13G03180.1|organism=Nannochloropsis oceanica|type=mRNA|length=4174bp|location=Sequence derived from alignment at chr13:924470..928643+ (Nannochloropsis oceanica) ATGGACCCTTTGCGTCCTGGACCCGGGGGGAGCACCAGCAGCGGCACTAT
CTCCCTAGGCGTCTCAGAAGCTCGCTTTCCCCCTACCTACGGTTCTGTGG
ACGACGGAGGCATCGGCATGGTCAACAGAAGTGGATGGAGGGATGGGGGA
AAGGAGAGCGGGTTTCCGCCTTTGCGTCGATCGTACTCGCTGAGCGCGAT
TAGAGAGGGTGTACCGTAAGTAGATAGAAAGCGGGACGGGGACCATGGGA
GGTTCTGAGGAGAGGAGAAGGAACTTATGGAGCCCTGCCACAATTTTCGG
GTCAGGCCACTCGAGCAATTAGCGTCCGACTTTTTCTTCACCCAATCATC
CTTTCTCGTTCCTTTCCTCCCTTCATCCATACCAAAGAACCCTTGGTCGG
CACGAGAACCTGGTAGCGGTCTGCTTGCTCATTATGGCGTTGCTTTGCCT
AGGTAGCGTTGATGGAGAGGAAGAGGGAAGAAGGGGAGGGAGGGAGATGC
CTCTGAGCTCGGAATGGGAAGGGGTTGGCGCCTGTCTATAAGTTCAATCT
ATCTATCTATCTATCATACACACACCCCGCATATCAAATGCCATTAATCA
TACCCTCTTATCCTCGGTCCCCAGGCATCATCCTCTTTGTCCTGCGGCCT
ATTCTCATCCCCTTCGCCGTCTCCCTCCTTTTCTACTACCTTCTCCAACC
CGTCGTCAACACCCTCAACAAAGTGAGGACCGGAGGGAGGGAGGGAGATA
GGGAGGGAGGGAGGAAGGAAGGAAGGAAGGAAGGAGGGAAAGAAGGAAAA
AGCATTAAGGTAACCTACAATCTCCTCCTGAGCACCTCATTTTCCTAGTC
ACTCTTCCCATTCTTCCTCCCTCCTCCCCCTCCCCTCAATCCCTCGTGCA
GCCTCCTGCCATTTGCTGTCGGGAGTTGTATGTGGGCTGTGCGGAACTAG
GGGCCCCTGTGAGCGACGAAGGGGAAGGAAGCATGGCTTCCTCTTCAATT
GGGGGCAGGTTTCTCTCCCGAGCCGTCGGAGGGCTGCGACGACGGTGGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGAAGAGGGTATCGTTACAAG
CGGCATATCTCGTCTCATAACTTTATGATCCTTCCCTCCCTTCCTCTCCC
CCTCCCTCCTTCCCTCTCTCCCATGCTATCTTCCTCAATAACCCAGCGCC
GGATACGATACCGTCGCCTCCGACGAGGAGGAAGGGAAAGAGGGAGGGCG
GGAGGGAGGGAGGGGGGGAGGGAGGACCACATCGCCCCTGTCGACCTTCA
CGGAAGGAGGGAGTGTGGTGGGGGAGGGAGGCGCATGGGAGAGGATGCAC
TGCCCGCGGCCTCTCGCTGTCATGCTGGCGATTGCCTTGGCCATGGGTAT
GACTGCCTGTCCTCCCTCCCTCCCTCCTCCCCTCCTTCCCTCCCTTCCTC
CCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCATGGACGCTCGT
CATGTTCTTTTTCTGCAATGTATTTATTTTACGCCCTTCTTCGTTCCCTC
CCTCCCTGCCTCCCCTTTCCTTCCTCAGGCGTCTTCGCCTTGTTCGGGAT
GATCATTTATCACTCCATTCAACGGCTTCAGAAGGACTGGCCCATATACG
AAATGGGTGCCGAGCAGGTTAAGAGGGAGGGAGAGAGTGAGGGAGGGATT
GAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGCGCATAGCGGGTGGGTA
GGTAAAGAGGGAGGAAGGATTTGAGGCGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGTACTCCTACCCTATCTGTCAATCCTCTGTCTGCGTGTT
CAAATCTCTCCTCCCTCCCTGTCTTCCTCCCTCCCTCCCTCAGGCCGTAC
AACGGCTCAATGCCGGGCTGGCCAAGTTGCATGTCTCATTAAATGATGAC
CTGGTTCCCTACCTGATGGACAACCTCAAGGTAGAGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGACAGAGCGATATCCCCACGGTGTCTTTCTTTCTTGC
TCATTTACCCATCCCTCCTTCCTTCCCTCCCTTCACATTACACCTTTCCA
CACCCCCGCAGAGCGATATCCCCGCCCTTGTATCGGACGTCTGGGTCGCC
GTGGCCAATGGGTAGGCCTCTCCCTCCCTCCCTCCCTCCCTCCCCCCCTC
CCTCCCTCCCTCCCGCCCGCCCTCCCTCCCTCCCTCTCCACCTCCATCCC
CACTCTCTCCCTCCCTCCCTTTCTCTCCCTCCCTCCCTCCCTCCCCACTC
TCTCCCTTATACCCTTCCCATGCTCCTTTTCCTCCCTCCCTCTCTTTCTC
CCTGCAGCATCCTCGTCCTCATTTTCCTCGTCTACCTCCTGGGCTCCCGG
CCTCAGCCGCTGCCTCCGGGCGTGTGGCGGAAGATCGACATCCATATCAG
GTACTGAGGGAAGGAAGGAGGGAGGGAGGGAGGGAGGGAAGGAAACGGCA
ACTCTTTCGGTTTGCCTTTTGCCTCTAATCCCTCAACATGATCCCGGCCC
TCCCCCCCTCTCTCTCAGGCGCTACATACGCCTCAAAACCCTCGTATGCG
TCCTCATCGCCATCTTCGTCGGCGTCTGCCTCTCCCTCCTCCGGGTACCG
TTCGCTGGCCTCTTCAGCCTTGTCACCTTCGTCTTGAACTACATCCCAAA
TGTACGCCCCTCCCTCCCTCCTCCCCTCCCTCCCCTCCCTCCCCTCCCCT
CCCCCCTCCCTCCCCTCCCTCCCCTCCCCTCCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCTTCCTTCATTTGTCGCATAACCAGACCTCGGGATT
GAGACGCACACACCCCCTCCCTCCCCAGTTCGGGCCCATTGTCGCCACCC
TCCTCCCCCTCCCCCTCGTCCTCTTCTCCCCCGACCTCTCCGACGCGGCC
AAAGTCCTGGCCTTCTTCCTTCCCTCCCTCGGCCACGTCTTCGTCGGGTA
CTACCTGGTGAGGAGGAAGGAAGAAAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGACGGAGGGTCCGGGGAAGTGAGGAAACCAGTAGAGAGGGAGGA
AAGGAAGGAATTTCACGCCATTCATCTATTGGCATCCATGTATGCCGTTC
GTCTATATCCATATTCTGTTTTAAATGGAGCCGCTACCTATCAATACCCA
TGCATGCCATTTTATCGAATAATCATTTTTTTTATGAGGAGCCGCTATCC
ATCAATATCCATGTATGCCATTCGATCTCATTATCTTTCTCTTTGAAAGG
AGCCGCGCCTGTTTGGGGAGCACCTTGAAGTCCATCCAATCATCATCCTC
CTCTCCCTCGGTACGCACCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTC
CCCTCCCTCCCTTCCTCACTCCCTCCCTTTCTCTCCCTCCCTCCCTTTCT
CTCCCTCCCTCCCTCCCTCCCTCCAGCCTTTTGGTCCGTCCTCTGGGGCG
TCTCCGGCATGATTCTCTCCGTGCCTCTCATCGCCTGCATGCGCATCGTC
TGCCAGAACCTGCAACACCCTTACGCGAGGTAGGAAAAGAGGGAGGAAAG
GATGGAGGACGTCAGGCTTGCCATTCCCACTTCAGGTTTAAATCGCGTCG
TTTTTCGGCTTGTCTTGCCGTCGATAAACACTCTCACCTCCATTTTTCAA
AACTACCTCCGTCCCACGCTCCGTCCCTCCCTCCCTCCCTCCCTCCCTCC
TTACCTTCCTCCCTCCCTCTCTAGGGTTGCCGTCCGGATCATGGAAGGGC
GCATTTTGGACTTTGACTTTGATGGGCACACTAGCATCATTAACACCGGC
TTTAAGGACAAGGAGGGACCCAGGTGAGGAACGGAGAGAGGGAGGAAGAG
AGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGGGAG
TGAGTGAGTGAGTGAGTGAGTGAGTGAGGGAGGGAGGATGGGGAGCGAAG
GAAGGGGGAAAAAAGCAGAATAGGTCTCACTTTCTCCACGTGTCCTGACA
TTACAGGCATCATCAAAGATCAGCATCGGAAGTTGTTTCTGTGCAGCCTG
CGTGCTCGGCGCCGTTTTTGGGAGGAGGAGGAGGGGGAGAGAGAATAGGT
GCAGCATATAAACATGCACTTTAG back to topCoding sequence (CDS) from alignment at chr13:924470..928643+ >NO13G03180.1 ID=NO13G03180.1|Name=NO13G03180.1|organism=Nannochloropsis oceanica|type=CDS|length=1683bp|location=Sequence derived from alignment at chr13:924470..928643+ (Nannochloropsis oceanica) ATGGACCCTTTGCGTCCTGGACCCGGGGGGAGCACCAGCAGCGGCACTAT CTCCCTAGGCGTCTCAGAAGCTCGCTTTCCCCCTACCTACGGTTCTGTGG ACGACGGAGGCATCGGCATGGTCAACAGAAGTGGATGGAGGGATGGGGGA AAGGAGAGCGGGTTTCCGCCTTTGCGTCGATCGTACTCGCTGAGCGCGAT TAGAGAGGGTGTACCAACCCTTGGTCGGCACGAGAACCTGGTAGCGGTCT GCTTGCTCATTATGGCGTTGCTTTGCCTAGGCATCATCCTCTTTGTCCTG CGGCCTATTCTCATCCCCTTCGCCGTCTCCCTCCTTTTCTACTACCTTCT CCAACCCGTCGTCAACACCCTCAACAAACCTCCTGCCATTTGCTGTCGGG AGTTGTATGTGGGCTGTGCGGAACTAGGGGCCCCTGTGAGCGACGAAGGG GAAGGAAGCATGGCTTCCTCTTCAATTGGGGGCAGGTTTCTCTCCCGAGC CGTCGGAGGGCTGCGACGACGCGCCGGATACGATACCGTCGCCTCCGACG AGGAGGAAGGGAAAGAGGGAGGGCGGGAGGGAGGGAGGGGGGGAGGGAGG ACCACATCGCCCCTGTCGACCTTCACGGAAGGAGGGAGTGTGGTGGGGGA GGGAGGCGCATGGGAGAGGATGCACTGCCCGCGGCCTCTCGCTGTCATGC TGGCGATTGCCTTGGCCATGGGCGTCTTCGCCTTGTTCGGGATGATCATT TATCACTCCATTCAACGGCTTCAGAAGGACTGGCCCATATACGAAATGGG TGCCGAGCAGGCCGTACAACGGCTCAATGCCGGGCTGGCCAAGTTGCATG TCTCATTAAATGATGACCTGGTTCCCTACCTGATGGACAACCTCAAGAGC GATATCCCCGCCCTTGTATCGGACGTCTGGGTCGCCGTGGCCAATGGCAT CCTCGTCCTCATTTTCCTCGTCTACCTCCTGGGCTCCCGGCCTCAGCCGC TGCCTCCGGGCGTGTGGCGGAAGATCGACATCCATATCAGGCGCTACATA CGCCTCAAAACCCTCGTATGCGTCCTCATCGCCATCTTCGTCGGCGTCTG CCTCTCCCTCCTCCGGGTACCGTTCGCTGGCCTCTTCAGCCTTGTCACCT TCGTCTTGAACTACATCCCAAATTTCGGGCCCATTGTCGCCACCCTCCTC CCCCTCCCCCTCGTCCTCTTCTCCCCCGACCTCTCCGACGCGGCCAAAGT CCTGGCCTTCTTCCTTCCCTCCCTCGGCCACGTCTTCGTCGGGTACTACC TGGAGCCGCGCCTGTTTGGGGAGCACCTTGAAGTCCATCCAATCATCATC CTCCTCTCCCTCGCCTTTTGGTCCGTCCTCTGGGGCGTCTCCGGCATGAT TCTCTCCGTGCCTCTCATCGCCTGCATGCGCATCGTCTGCCAGAACCTGC AACACCCTTACGCGAGGGTTGCCGTCCGGATCATGGAAGGGCGCATTTTG GACTTTGACTTTGATGGGCACACTAGCATCATTAACACCGGCTTTAAGGA CAAGGAGGGACCCAGGCATCATCAAAGATCAGCATCGGAAGTTGTTTCTG TGCAGCCTGCGTGCTCGGCGCCGTTTTTGGGAGGAGGAGGAGGGGGAGAG AGAATAGGTGCAGCATATAAACATGCACTTTAG back to top
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