NO13G03180.1, NO13G03180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G03180.1
Unique NameNO13G03180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1683
Alignment locationchr13:924470..928643 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:924470..928643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G03180.1 vs.
Match: EWM20746.1 (membrane protein- a permease [Nannochloropsis gaditana])

HSP 1 Score: 279.6 bits (714), Expect = 2.100e-71
Identity = 147/192 (76.56%), Postives = 159/192 (82.81%), Query Frame = 0
Query:  346 IRRYIRLKTLVCVLIAIFVGVCLSLLRVPFAGLFSLVTFVLNYIPNFGPIVATLLPLPLVLFSPDLSDAAKVLAFFLPSLGHVFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLQHPYARVAVRIMEGRILDFDFDGHTSIINTGFKDKEGPR-HHQRSASEVVSVQP 537
            +RRYIRLKT VCVLIA+ VG CLSLLRVPF+GLF L+TFVLNYIPNFGPIVATLLPLPLV+FSPDLS  AKVLA  LPSLGH FVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNL+HPYARVA RI+EGR+ D   DG            EGPR ++Q   +E   +QP
Sbjct:   11 LRRYIRLKTFVCVLIAVLVGCCLSLLRVPFSGLFGLLTFVLNYIPNFGPIVATLLPLPLVVFSPDLSVTAKVLALVLPSLGHFFVGYYLEPRLFGEHLEVHPIIILLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLEHPYARVAARIIEGRLFDAGLDGRNG-GKPPCAGSEGPRGYYQNRTAEETPIQP 201          
The following BLAST results are available for this feature:
BLAST of NO13G03180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20746.12.100e-7176.56membrane protein- a permease [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G03180NO13G03180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G03180.1NO13G03180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G03180.1.cds1NO13G03180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03180.1.cds2NO13G03180.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03180.1.cds3NO13G03180.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03180.1.cds4NO13G03180.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03180.1.cds5NO13G03180.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03180.1.cds6NO13G03180.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03180.1.cds7NO13G03180.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03180.1.cds8NO13G03180.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03180.1.cds9NO13G03180.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03180.1.cds10NO13G03180.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03180.1.cds11NO13G03180.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03180.1.cds12NO13G03180.1.cds12Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03180.1.cds13NO13G03180.1.cds13Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03180.1.cds14NO13G03180.1.cds14Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03180.1.cds15NO13G03180.1.cds15Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G03180.1 ID=NO13G03180.1|Name=NO13G03180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1683bp
ATGGACCCTTTGCGTCCTGGACCCGGGGGGAGCACCAGCAGCGGCACTAT
CTCCCTAGGCGTCTCAGAAGCTCGCTTTCCCCCTACCTACGGTTCTGTGG
ACGACGGAGGCATCGGCATGGTCAACAGAAGTGGATGGAGGGATGGGGGA
AAGGAGAGCGGGTTTCCGCCTTTGCGTCGATCGTACTCGCTGAGCGCGAT
TAGAGAGGGTGTACCAACCCTTGGTCGGCACGAGAACCTGGTAGCGGTCT
GCTTGCTCATTATGGCGTTGCTTTGCCTAGGCATCATCCTCTTTGTCCTG
CGGCCTATTCTCATCCCCTTCGCCGTCTCCCTCCTTTTCTACTACCTTCT
CCAACCCGTCGTCAACACCCTCAACAAACCTCCTGCCATTTGCTGTCGGG
AGTTGTATGTGGGCTGTGCGGAACTAGGGGCCCCTGTGAGCGACGAAGGG
GAAGGAAGCATGGCTTCCTCTTCAATTGGGGGCAGGTTTCTCTCCCGAGC
CGTCGGAGGGCTGCGACGACGCGCCGGATACGATACCGTCGCCTCCGACG
AGGAGGAAGGGAAAGAGGGAGGGCGGGAGGGAGGGAGGGGGGGAGGGAGG
ACCACATCGCCCCTGTCGACCTTCACGGAAGGAGGGAGTGTGGTGGGGGA
GGGAGGCGCATGGGAGAGGATGCACTGCCCGCGGCCTCTCGCTGTCATGC
TGGCGATTGCCTTGGCCATGGGCGTCTTCGCCTTGTTCGGGATGATCATT
TATCACTCCATTCAACGGCTTCAGAAGGACTGGCCCATATACGAAATGGG
TGCCGAGCAGGCCGTACAACGGCTCAATGCCGGGCTGGCCAAGTTGCATG
TCTCATTAAATGATGACCTGGTTCCCTACCTGATGGACAACCTCAAGAGC
GATATCCCCGCCCTTGTATCGGACGTCTGGGTCGCCGTGGCCAATGGCAT
CCTCGTCCTCATTTTCCTCGTCTACCTCCTGGGCTCCCGGCCTCAGCCGC
TGCCTCCGGGCGTGTGGCGGAAGATCGACATCCATATCAGGCGCTACATA
CGCCTCAAAACCCTCGTATGCGTCCTCATCGCCATCTTCGTCGGCGTCTG
CCTCTCCCTCCTCCGGGTACCGTTCGCTGGCCTCTTCAGCCTTGTCACCT
TCGTCTTGAACTACATCCCAAATTTCGGGCCCATTGTCGCCACCCTCCTC
CCCCTCCCCCTCGTCCTCTTCTCCCCCGACCTCTCCGACGCGGCCAAAGT
CCTGGCCTTCTTCCTTCCCTCCCTCGGCCACGTCTTCGTCGGGTACTACC
TGGAGCCGCGCCTGTTTGGGGAGCACCTTGAAGTCCATCCAATCATCATC
CTCCTCTCCCTCGCCTTTTGGTCCGTCCTCTGGGGCGTCTCCGGCATGAT
TCTCTCCGTGCCTCTCATCGCCTGCATGCGCATCGTCTGCCAGAACCTGC
AACACCCTTACGCGAGGGTTGCCGTCCGGATCATGGAAGGGCGCATTTTG
GACTTTGACTTTGATGGGCACACTAGCATCATTAACACCGGCTTTAAGGA
CAAGGAGGGACCCAGGCATCATCAAAGATCAGCATCGGAAGTTGTTTCTG
TGCAGCCTGCGTGCTCGGCGCCGTTTTTGGGAGGAGGAGGAGGGGGAGAG
AGAATAGGTGCAGCATATAAACATGCACTTTAG
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protein sequence of NO13G03180.1

>NO13G03180.1-protein ID=NO13G03180.1-protein|Name=NO13G03180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=561bp
MDPLRPGPGGSTSSGTISLGVSEARFPPTYGSVDDGGIGMVNRSGWRDGG
KESGFPPLRRSYSLSAIREGVPTLGRHENLVAVCLLIMALLCLGIILFVL
RPILIPFAVSLLFYYLLQPVVNTLNKPPAICCRELYVGCAELGAPVSDEG
EGSMASSSIGGRFLSRAVGGLRRRAGYDTVASDEEEGKEGGREGGRGGGR
TTSPLSTFTEGGSVVGEGGAWERMHCPRPLAVMLAIALAMGVFALFGMII
YHSIQRLQKDWPIYEMGAEQAVQRLNAGLAKLHVSLNDDLVPYLMDNLKS
DIPALVSDVWVAVANGILVLIFLVYLLGSRPQPLPPGVWRKIDIHIRRYI
RLKTLVCVLIAIFVGVCLSLLRVPFAGLFSLVTFVLNYIPNFGPIVATLL
PLPLVLFSPDLSDAAKVLAFFLPSLGHVFVGYYLEPRLFGEHLEVHPIII
LLSLAFWSVLWGVSGMILSVPLIACMRIVCQNLQHPYARVAVRIMEGRIL
DFDFDGHTSIINTGFKDKEGPRHHQRSASEVVSVQPACSAPFLGGGGGGE
RIGAAYKHAL*
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mRNA from alignment at chr13:924470..928643+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G03180.1 ID=NO13G03180.1|Name=NO13G03180.1|organism=Nannochloropsis oceanica|type=mRNA|length=4174bp|location=Sequence derived from alignment at chr13:924470..928643+ (Nannochloropsis oceanica)
ATGGACCCTTTGCGTCCTGGACCCGGGGGGAGCACCAGCAGCGGCACTAT CTCCCTAGGCGTCTCAGAAGCTCGCTTTCCCCCTACCTACGGTTCTGTGG ACGACGGAGGCATCGGCATGGTCAACAGAAGTGGATGGAGGGATGGGGGA AAGGAGAGCGGGTTTCCGCCTTTGCGTCGATCGTACTCGCTGAGCGCGAT TAGAGAGGGTGTACCGTAAGTAGATAGAAAGCGGGACGGGGACCATGGGA GGTTCTGAGGAGAGGAGAAGGAACTTATGGAGCCCTGCCACAATTTTCGG GTCAGGCCACTCGAGCAATTAGCGTCCGACTTTTTCTTCACCCAATCATC CTTTCTCGTTCCTTTCCTCCCTTCATCCATACCAAAGAACCCTTGGTCGG CACGAGAACCTGGTAGCGGTCTGCTTGCTCATTATGGCGTTGCTTTGCCT AGGTAGCGTTGATGGAGAGGAAGAGGGAAGAAGGGGAGGGAGGGAGATGC CTCTGAGCTCGGAATGGGAAGGGGTTGGCGCCTGTCTATAAGTTCAATCT ATCTATCTATCTATCATACACACACCCCGCATATCAAATGCCATTAATCA TACCCTCTTATCCTCGGTCCCCAGGCATCATCCTCTTTGTCCTGCGGCCT ATTCTCATCCCCTTCGCCGTCTCCCTCCTTTTCTACTACCTTCTCCAACC CGTCGTCAACACCCTCAACAAAGTGAGGACCGGAGGGAGGGAGGGAGATA GGGAGGGAGGGAGGAAGGAAGGAAGGAAGGAAGGAGGGAAAGAAGGAAAA AGCATTAAGGTAACCTACAATCTCCTCCTGAGCACCTCATTTTCCTAGTC ACTCTTCCCATTCTTCCTCCCTCCTCCCCCTCCCCTCAATCCCTCGTGCA GCCTCCTGCCATTTGCTGTCGGGAGTTGTATGTGGGCTGTGCGGAACTAG GGGCCCCTGTGAGCGACGAAGGGGAAGGAAGCATGGCTTCCTCTTCAATT GGGGGCAGGTTTCTCTCCCGAGCCGTCGGAGGGCTGCGACGACGGTGGGG AGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGAAGAGGGTATCGTTACAAG CGGCATATCTCGTCTCATAACTTTATGATCCTTCCCTCCCTTCCTCTCCC CCTCCCTCCTTCCCTCTCTCCCATGCTATCTTCCTCAATAACCCAGCGCC GGATACGATACCGTCGCCTCCGACGAGGAGGAAGGGAAAGAGGGAGGGCG GGAGGGAGGGAGGGGGGGAGGGAGGACCACATCGCCCCTGTCGACCTTCA CGGAAGGAGGGAGTGTGGTGGGGGAGGGAGGCGCATGGGAGAGGATGCAC TGCCCGCGGCCTCTCGCTGTCATGCTGGCGATTGCCTTGGCCATGGGTAT GACTGCCTGTCCTCCCTCCCTCCCTCCTCCCCTCCTTCCCTCCCTTCCTC CCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCATGGACGCTCGT CATGTTCTTTTTCTGCAATGTATTTATTTTACGCCCTTCTTCGTTCCCTC CCTCCCTGCCTCCCCTTTCCTTCCTCAGGCGTCTTCGCCTTGTTCGGGAT GATCATTTATCACTCCATTCAACGGCTTCAGAAGGACTGGCCCATATACG AAATGGGTGCCGAGCAGGTTAAGAGGGAGGGAGAGAGTGAGGGAGGGATT GAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGCGCATAGCGGGTGGGTA GGTAAAGAGGGAGGAAGGATTTGAGGCGGGAGGGAGGGAGGGAGGGAGGG AGGGAGGGAGGGTACTCCTACCCTATCTGTCAATCCTCTGTCTGCGTGTT CAAATCTCTCCTCCCTCCCTGTCTTCCTCCCTCCCTCCCTCAGGCCGTAC AACGGCTCAATGCCGGGCTGGCCAAGTTGCATGTCTCATTAAATGATGAC CTGGTTCCCTACCTGATGGACAACCTCAAGGTAGAGAGGGAGGGAGGGAG GGAGGGAGGGAGGGACAGAGCGATATCCCCACGGTGTCTTTCTTTCTTGC TCATTTACCCATCCCTCCTTCCTTCCCTCCCTTCACATTACACCTTTCCA CACCCCCGCAGAGCGATATCCCCGCCCTTGTATCGGACGTCTGGGTCGCC GTGGCCAATGGGTAGGCCTCTCCCTCCCTCCCTCCCTCCCTCCCCCCCTC CCTCCCTCCCTCCCGCCCGCCCTCCCTCCCTCCCTCTCCACCTCCATCCC CACTCTCTCCCTCCCTCCCTTTCTCTCCCTCCCTCCCTCCCTCCCCACTC TCTCCCTTATACCCTTCCCATGCTCCTTTTCCTCCCTCCCTCTCTTTCTC CCTGCAGCATCCTCGTCCTCATTTTCCTCGTCTACCTCCTGGGCTCCCGG CCTCAGCCGCTGCCTCCGGGCGTGTGGCGGAAGATCGACATCCATATCAG GTACTGAGGGAAGGAAGGAGGGAGGGAGGGAGGGAGGGAAGGAAACGGCA ACTCTTTCGGTTTGCCTTTTGCCTCTAATCCCTCAACATGATCCCGGCCC TCCCCCCCTCTCTCTCAGGCGCTACATACGCCTCAAAACCCTCGTATGCG TCCTCATCGCCATCTTCGTCGGCGTCTGCCTCTCCCTCCTCCGGGTACCG TTCGCTGGCCTCTTCAGCCTTGTCACCTTCGTCTTGAACTACATCCCAAA TGTACGCCCCTCCCTCCCTCCTCCCCTCCCTCCCCTCCCTCCCCTCCCCT CCCCCCTCCCTCCCCTCCCTCCCCTCCCCTCCCCTCCCTCCCTCCCTCCC TCCCTCCCTCCCTCCTTCCTTCATTTGTCGCATAACCAGACCTCGGGATT GAGACGCACACACCCCCTCCCTCCCCAGTTCGGGCCCATTGTCGCCACCC TCCTCCCCCTCCCCCTCGTCCTCTTCTCCCCCGACCTCTCCGACGCGGCC AAAGTCCTGGCCTTCTTCCTTCCCTCCCTCGGCCACGTCTTCGTCGGGTA CTACCTGGTGAGGAGGAAGGAAGAAAGGGAGGGAGGGAGGGAGGGAGGGA GGGAGGGACGGAGGGTCCGGGGAAGTGAGGAAACCAGTAGAGAGGGAGGA AAGGAAGGAATTTCACGCCATTCATCTATTGGCATCCATGTATGCCGTTC GTCTATATCCATATTCTGTTTTAAATGGAGCCGCTACCTATCAATACCCA TGCATGCCATTTTATCGAATAATCATTTTTTTTATGAGGAGCCGCTATCC ATCAATATCCATGTATGCCATTCGATCTCATTATCTTTCTCTTTGAAAGG AGCCGCGCCTGTTTGGGGAGCACCTTGAAGTCCATCCAATCATCATCCTC CTCTCCCTCGGTACGCACCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTC CCCTCCCTCCCTTCCTCACTCCCTCCCTTTCTCTCCCTCCCTCCCTTTCT CTCCCTCCCTCCCTCCCTCCCTCCAGCCTTTTGGTCCGTCCTCTGGGGCG TCTCCGGCATGATTCTCTCCGTGCCTCTCATCGCCTGCATGCGCATCGTC TGCCAGAACCTGCAACACCCTTACGCGAGGTAGGAAAAGAGGGAGGAAAG GATGGAGGACGTCAGGCTTGCCATTCCCACTTCAGGTTTAAATCGCGTCG TTTTTCGGCTTGTCTTGCCGTCGATAAACACTCTCACCTCCATTTTTCAA AACTACCTCCGTCCCACGCTCCGTCCCTCCCTCCCTCCCTCCCTCCCTCC TTACCTTCCTCCCTCCCTCTCTAGGGTTGCCGTCCGGATCATGGAAGGGC GCATTTTGGACTTTGACTTTGATGGGCACACTAGCATCATTAACACCGGC TTTAAGGACAAGGAGGGACCCAGGTGAGGAACGGAGAGAGGGAGGAAGAG AGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGGGAG TGAGTGAGTGAGTGAGTGAGTGAGTGAGGGAGGGAGGATGGGGAGCGAAG GAAGGGGGAAAAAAGCAGAATAGGTCTCACTTTCTCCACGTGTCCTGACA TTACAGGCATCATCAAAGATCAGCATCGGAAGTTGTTTCTGTGCAGCCTG CGTGCTCGGCGCCGTTTTTGGGAGGAGGAGGAGGGGGAGAGAGAATAGGT GCAGCATATAAACATGCACTTTAG
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Coding sequence (CDS) from alignment at chr13:924470..928643+

>NO13G03180.1 ID=NO13G03180.1|Name=NO13G03180.1|organism=Nannochloropsis oceanica|type=CDS|length=1683bp|location=Sequence derived from alignment at chr13:924470..928643+ (Nannochloropsis oceanica)
ATGGACCCTTTGCGTCCTGGACCCGGGGGGAGCACCAGCAGCGGCACTAT
CTCCCTAGGCGTCTCAGAAGCTCGCTTTCCCCCTACCTACGGTTCTGTGG
ACGACGGAGGCATCGGCATGGTCAACAGAAGTGGATGGAGGGATGGGGGA
AAGGAGAGCGGGTTTCCGCCTTTGCGTCGATCGTACTCGCTGAGCGCGAT
TAGAGAGGGTGTACCAACCCTTGGTCGGCACGAGAACCTGGTAGCGGTCT
GCTTGCTCATTATGGCGTTGCTTTGCCTAGGCATCATCCTCTTTGTCCTG
CGGCCTATTCTCATCCCCTTCGCCGTCTCCCTCCTTTTCTACTACCTTCT
CCAACCCGTCGTCAACACCCTCAACAAACCTCCTGCCATTTGCTGTCGGG
AGTTGTATGTGGGCTGTGCGGAACTAGGGGCCCCTGTGAGCGACGAAGGG
GAAGGAAGCATGGCTTCCTCTTCAATTGGGGGCAGGTTTCTCTCCCGAGC
CGTCGGAGGGCTGCGACGACGCGCCGGATACGATACCGTCGCCTCCGACG
AGGAGGAAGGGAAAGAGGGAGGGCGGGAGGGAGGGAGGGGGGGAGGGAGG
ACCACATCGCCCCTGTCGACCTTCACGGAAGGAGGGAGTGTGGTGGGGGA
GGGAGGCGCATGGGAGAGGATGCACTGCCCGCGGCCTCTCGCTGTCATGC
TGGCGATTGCCTTGGCCATGGGCGTCTTCGCCTTGTTCGGGATGATCATT
TATCACTCCATTCAACGGCTTCAGAAGGACTGGCCCATATACGAAATGGG
TGCCGAGCAGGCCGTACAACGGCTCAATGCCGGGCTGGCCAAGTTGCATG
TCTCATTAAATGATGACCTGGTTCCCTACCTGATGGACAACCTCAAGAGC
GATATCCCCGCCCTTGTATCGGACGTCTGGGTCGCCGTGGCCAATGGCAT
CCTCGTCCTCATTTTCCTCGTCTACCTCCTGGGCTCCCGGCCTCAGCCGC
TGCCTCCGGGCGTGTGGCGGAAGATCGACATCCATATCAGGCGCTACATA
CGCCTCAAAACCCTCGTATGCGTCCTCATCGCCATCTTCGTCGGCGTCTG
CCTCTCCCTCCTCCGGGTACCGTTCGCTGGCCTCTTCAGCCTTGTCACCT
TCGTCTTGAACTACATCCCAAATTTCGGGCCCATTGTCGCCACCCTCCTC
CCCCTCCCCCTCGTCCTCTTCTCCCCCGACCTCTCCGACGCGGCCAAAGT
CCTGGCCTTCTTCCTTCCCTCCCTCGGCCACGTCTTCGTCGGGTACTACC
TGGAGCCGCGCCTGTTTGGGGAGCACCTTGAAGTCCATCCAATCATCATC
CTCCTCTCCCTCGCCTTTTGGTCCGTCCTCTGGGGCGTCTCCGGCATGAT
TCTCTCCGTGCCTCTCATCGCCTGCATGCGCATCGTCTGCCAGAACCTGC
AACACCCTTACGCGAGGGTTGCCGTCCGGATCATGGAAGGGCGCATTTTG
GACTTTGACTTTGATGGGCACACTAGCATCATTAACACCGGCTTTAAGGA
CAAGGAGGGACCCAGGCATCATCAAAGATCAGCATCGGAAGTTGTTTCTG
TGCAGCCTGCGTGCTCGGCGCCGTTTTTGGGAGGAGGAGGAGGGGGAGAG
AGAATAGGTGCAGCATATAAACATGCACTTTAG
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Synonyms
Publications