NO13G02850, NO13G02850 (gene) Nannochloropsis oceanica

Overview
NameNO13G02850
Unique NameNO13G02850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1946
Alignment locationchr13:794247..796192 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:794247..796192 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018637DUF2059
Homology
BLAST of NO13G02850 vs. NCBI_GenBank
Match: XP_005852774.1 (hypothetical protein NGA_0685100 [Nannochloropsis gaditana CCMP526] >EKU23056.1 hypothetical protein NGA_0685100 [Nannochloropsis gaditana CCMP526] >EWM21949.1 protein of unknown function DUF2059 [Nannochloropsis gaditana])

HSP 1 Score: 231.5 bits (589), Expect = 2.400e-57
Identity = 122/198 (61.62%), Postives = 153/198 (77.27%), Query Frame = 0
Query:    4 MAPWLVHLTLALGAVLMCL----PGAAALKDTIKNRMKLADKYMDENPVDEGMEAMARQHMLKMPDPKEREQLMKNMQQMDTGKVRTITRQAMVKHFTVDELEYLINMYSTHTGKTLMSKIGAYSAEIQPQIADVMKDIMENNVVFYQEQEKRARAGELDHVTTEFDKEKKPEAIQLPPMNQKIKDGVYMGSSMKDAR 198
            MA  LVH++LALG  L+ L        ALKDT+KNRMKLAD+Y+ ENPV+E ME MARQHMLKMPDPKEREQLM+N++ +D   VR ITR AMVKHFT +ELE+LINMYST  GK++M+KIGAYSAE+ PQI +VM  +ME+NV FYQEQE+RA+ GEL+ +         PE I+LPP +QK+KDGVYMG+ + +A+
Sbjct:    1 MASRLVHVSLALGTTLLILCLSMTMVGALKDTVKNRMKLADQYIFENPVEENMEGMARQHMLKMPDPKEREQLMRNLETLDMDHVRRITRHAMVKHFTTEELEFLINMYSTSVGKSVMAKIGAYSAELGPQIQEVMMPVMESNVEFYQEQERRAKRGELNDL---------PETIKLPPQSQKLKDGVYMGNGLSNAQ 189          
BLAST of NO13G02850 vs. NCBI_GenBank
Match: WP_012529913.1 (DUF2059 domain-containing protein [Geobacter bemidjiensis] >ACH38501.1 hypothetical protein Gbem_1483 [Geobacter bemidjiensis Bem])

HSP 1 Score: 69.3 bits (168), Expect = 1.500e-8
Identity = 49/137 (35.77%), Postives = 77/137 (56.20%), Query Frame = 0
Query:   18 VLMCLPGAAALKDTIKNRMKLADKYMDENPVDEGMEAMARQHMLKMPDPKEREQLMKNM-QQMDTGKVRTITRQAMVKHFTVDELEYLINMYSTHTGKTLMSKIGAYSAEIQPQI-ADVMKDIME-NNVVFYQEQEK 152
            VL+ +  A AL+DT  NR+  A++Y++  P  + ++  A Q  +   DP ER+     M + +D   +    +  MVKHFT DEL+ L + Y +  GK+ M K GAY A++ P I A+++K I + N  V   E+EK
Sbjct:   11 VLLMVSVAFALEDTSLNRLTQAERYLEVTPPKDLLQDAAEQMAMNF-DPSERQAFKDLMTKHLDIEALTKTMKDTMVKHFTADELKALADFYGSVEGKSSMKKFGAYMADVMPSIQAEMLKAISKANREVADTEEEK 146          
BLAST of NO13G02850 vs. NCBI_GenBank
Match: WP_012173848.1 (DUF2059 domain-containing protein [Desulfococcus oleovorans] >ABW66229.1 conserved hypothetical protein [Desulfococcus oleovorans Hxd3])

HSP 1 Score: 65.1 bits (157), Expect = 2.900e-7
Identity = 48/140 (34.29%), Postives = 77/140 (55.00%), Query Frame = 0
Query:   17 AVLMCLPGAA-ALKDTIKNRMKLADKYMDENPVDEGMEAMARQHMLKMPDPKEREQLMKNM-QQMDTGKVRTITRQAMVKHFTVDELEYLINMYSTHTGKTLMSKIGAYSAEIQPQI-ADVMK----DIMENNVVFYQEQ 150
            A ++C+   A AL+DT  NR K A +Y+   P  + M+ MA++  + +P P+ RE+    + + +D      I + +M KHFT DEL+ L + Y +  GK+ M+K G Y  +I P I A+++K     I EN     Q+Q
Sbjct:    7 AFIICIAATAFALEDTPSNRQKEAARYLKTTPPADMMKDMAQKVSMNLP-PENREEFKALLTKHLDLEAFTKIMKDSMEKHFTADELKALADFYGSPVGKSAMNKFGDYMGDIMPAIQAELLKAHAEAIKENXXANRQKQ 145          
BLAST of NO13G02850 vs. NCBI_GenBank
Match: WP_015720644.1 (DUF2059 domain-containing protein [Geobacter sp. M18] >ADW13794.1 Protein of unknown function DUF2059 [Geobacter sp. M18])

HSP 1 Score: 65.1 bits (157), Expect = 2.900e-7
Identity = 41/133 (30.83%), Postives = 64/133 (48.12%), Query Frame = 0
Query:    9 VHLTLALGAVLMCLPGAAALKDTIKNRMKLADKYMDENPVDEGMEAMARQHMLKMPDPKEREQLMKNM-QQMDTGKVRTITRQAMVKHFTVDELEYLINMYSTHTGKTLMSKIGAYSAEIQPQIADVMKDIME 141
            +   +A   VL+    A  L DT+ NR    ++Y+   P  E  + M  +   ++P P+ RE     M + +D   +   T  AMVKHFT DEL  L N Y +  GK+ M K   Y A++ P + + ++   E
Sbjct:    4 IRFVMAAALVLLLASQAFCLDDTVANRKVQVERYLKAVPPAELFQDMTEKLATQVP-PENREMFKATMSKNLDLNAITKATSDAMVKHFTADELAALANFYGSPVGKSAMKKFADYMADVMPTLQEELEKAAE 135          
BLAST of NO13G02850 vs. NCBI_GenBank
Match: WP_103017765.1 (DUF2059 domain-containing protein [Salinibacter ruber])

HSP 1 Score: 64.7 bits (156), Expect = 3.800e-7
Identity = 42/116 (36.21%), Postives = 65/116 (56.03%), Query Frame = 0
Query:   30 DTIKNRMKLADKYMDENPVDEGMEAMARQHMLKMP-DPKEREQLMKNMQQMDTGKVRTITRQAMVKHFTVDELEYLINMYSTHTGKTLMSKIGAYSAEIQP----QIADVMKDIME 141
            DT  NR + A KY++  PV++ M  +  +   +MP   KER Q + +  + DT  +RT    AM   FTV+E+E L   YST  G+++M K+  Y A++QP    ++   MK +ME
Sbjct:   31 DTDANRRQAAKKYLEVQPVEKMMRKVVEKTSARMPGGSKERAQAVMDELRYDT--LRTAMIDAMANTFTVEEIEALTQFYSTPEGRSVMEKMSTYMAKVQPVMMKEVRRSMKQVME 144          
The following BLAST results are available for this feature:
BLAST of NO13G02850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
XP_005852774.12.400e-5761.62hypothetical protein NGA_0685100 [Nannochloropsis ... [more]
WP_012529913.11.500e-835.77DUF2059 domain-containing protein [Geobacter bemid... [more]
WP_012173848.12.900e-734.29DUF2059 domain-containing protein [Desulfococcus o... [more]
WP_015720644.12.900e-730.83DUF2059 domain-containing protein [Geobacter sp. M... [more]
WP_103017765.13.800e-736.21DUF2059 domain-containing protein [Salinibacter ru... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR048ncniR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001606NSK001606Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02850.1NO13G02850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673824gene_9026Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100157g7gene8486Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02850.1NO13G02850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02850 ID=NO13G02850|Name=NO13G02850|organism=Nannochloropsis oceanica|type=gene|length=1946bp
ACAGAAGAAACCATACCCCAGTATCATGAGGACCATGGCACCCTGGCTCG
TCCACCTGACTCTTGCCCTGGGGGCTGTGTTGATGTGCCTGCCCGGAGCT
GCCGCACTCAAGGACACGATCAAGAACCGCATGAAGTTGGCGGACAAGTA
CATGGACGAGAACCCCGTGGATGAGGGAATGGAAGCCATGGCCCGgtacg
gaagtggggtggatgtgggtgggtgctatggggcatcacgaatcaattga
gggggtgatgcggatggcttggttcctcgcggacctggtcatcgagggag
aaagcgaattgaatgacgaggtataggaccaaaacttcgacacactcacg
ttactatgtgctgacaactaaatgctcgcggtgaggcgcgccaagcagca
ggtactcaccctccttcgcccccactcccttcctcctctagACAACACAT
GCTGAAGATGCCTGACCCAAAGGAGCGTGAGCAGCTCATGAAGAACATGC
AACAAATGGACACAGGCAAGGTCCGCACTATTACCCGTCAGGCTATGGTG
AAGCACTTCACTGTCGATGAGCTCGAGTATCTCATCAATATGTATAGgta
agcccccttcccttctctttctctcccctcccttcagtaccatgttcgtc
gtcttcaatgccaaagcaccagaagcttcttgaaccaaatgaccaactga
gggtgtcacaagtcaagccataacgcgttcccctcaattttttagtgggg
gttctgctccctcccttccaaaattgcgagacggccaaggtctaatgcag
tgcctcccccgcatagagggttcggtgtttttccctgtcggagggcgccc
ggtacagcaacgtggagtctaataagatgtaggagaataaagaggaaatg
atctcatccattataccccctcttcccccgtccctctcctccctcccacc
cgcagCACTCACACGGGTAAGACATTGATGAGCAAAATCGGCGCGTATTC
GGCCGAGATTCAGCCTCAGATCGCCGACGTCATGAAGGATATCATGGAGA
ACAACGTAGTGTTTTACCAGGAGCAGGAGAAGCGGGCGCGGGCCGGTGAG
TTGGACCATGTGACTACTGAATTCGACAAGGAGAAGAAGCCGGAGGCAAT
TCAGTTGCCGCCGATGAATCAGAAGATCAAGGATGGAGTTTACATGGGAA
GCAGCATGAAGGATGCCCGGCCAGTGAAGGATGAGGTCTAAATGAATCAA
CAGAGAAGAGGGCAAGAGCATTTGTCTAATCATTGATGTGGGGTGAAGAG
GAGTGAAGATTTTCCTCGTCCAATTTTAATGTTCAACTGCGCCCGAAGAC
GGGAGAAGGAAAAAATCCATTTTAAAACTCAACAAAAACAACAGAAACAA
GAGGCCAATAAAGAAGAAGAAAAAGGAGGAGGAAGAGAGGAAGCCTATGG
CATGGATGCACGCATAGAGAGGACAGTTGCTGTCGTTCGGTCCCTCTGCA
TCAGCGCCATGCGGCGCGGAGACAGTTTATGCGGGGCTGGCTGCAAATCC
CCATCGGTAGGAGGGGAAAAAAATAAAAAGGAAAACAAGCGAAGAAAAGG
AAGAAAGAAGGCATCACTACCGTCATAAGTCAAAGTACAGAAGACACCTA
CTCAAACAGCATGATGACCCACAGGACGAGAGCAGCGATAGGGCGCATGG
GAGTGGAAGCAGTAGCGGCAGCAGCAGCGGCGGCGGCCACCCGCCTCTTC
TTGAAGAGAGAAAGAACCACGACTCAGACTAGCGGAGGGTATTAAAATCT
GGCAACATCCTTGCCTTCTCCTCTTTACGAGGTGGAGACAGGAACATGGG
AGTGGTACCCGAGCAAGTCAACTGAAAACCATAGAAATTCACCCAAAGAG
TACATCAAAACAAATAAACCATAAAGCCAGTGGGATAAAAGGCAGT
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protein sequence of NO13G02850.1

>NO13G02850.1-protein ID=NO13G02850.1-protein|Name=NO13G02850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MRTMAPWLVHLTLALGAVLMCLPGAAALKDTIKNRMKLADKYMDENPVDE
GMEAMARQHMLKMPDPKEREQLMKNMQQMDTGKVRTITRQAMVKHFTVDE
LEYLINMYSTHTGKTLMSKIGAYSAEIQPQIADVMKDIMENNVVFYQEQE
KRARAGELDHVTTEFDKEKKPEAIQLPPMNQKIKDGVYMGSSMKDARPVK
DEV*
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Synonyms
Publications