NO13G02850.1, NO13G02850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02850.1
Unique NameNO13G02850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1342
Alignment locationchr13:794247..796192 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:794247..796192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02850.1 vs.
Match: XP_005852774.1 (hypothetical protein NGA_0685100 [Nannochloropsis gaditana CCMP526]; EKU23056.1 hypothetical protein NGA_0685100 [Nannochloropsis gaditana CCMP526]; EWM21949.1 protein of unknown function DUF2059 [Nannochloropsis gaditana])

HSP 1 Score: 231.5 bits (589), Expect = 2.400e-57
Identity = 122/198 (61.62%), Postives = 153/198 (77.27%), Query Frame = 0 
Query:    4 MAPWLVHLTLALGAVLMCL----PGAAALKDTIKNRMKLADKYMDENPVDEGMEAMARQHMLKMPDPKEREQLMKNMQQMDTGKVRTITRQAMVKHFTVDELEYLINMYSTHTGKTLMSKIGAYSAEIQPQIADVMKDIMENNVVFYQEQEKRARAGELDHVTTEFDKEKKPEAIQLPPMNQKIKDGVYMGSSMKDAR 198
            MA  LVH++LALG  L+ L        ALKDT+KNRMKLAD+Y+ ENPV+E ME MARQHMLKMPDPKEREQLM+N++ +D   VR ITR AMVKHFT +ELE+LINMYST  GK++M+KIGAYSAE+ PQI +VM  +ME+NV FYQEQE+RA+ GEL+ +         PE I+LPP +QK+KDGVYMG+ + +A+
Sbjct:    1 MASRLVHVSLALGTTLLILCLSMTMVGALKDTVKNRMKLADQYIFENPVEENMEGMARQHMLKMPDPKEREQLMRNLETLDMDHVRRITRHAMVKHFTTEELEFLINMYSTSVGKSVMAKIGAYSAELGPQIQEVMMPVMESNVEFYQEQERRAKRGELNDL---------PETIKLPPQSQKLKDGVYMGNGLSNAQ 189
The following BLAST results are available for this feature:
BLAST of NO13G02850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852774.12.400e-5761.62hypothetical protein NGA_0685100 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02850NO13G02850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02850.1NO13G02850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02850.1.cds1NO13G02850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02850.1.cds2NO13G02850.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02850.1.cds3NO13G02850.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02850.1 ID=NO13G02850.1|Name=NO13G02850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1342bp
ACAGAAGAAACCATACCCCAGTATCATGAGGACCATGGCACCCTGGCTCG
TCCACCTGACTCTTGCCCTGGGGGCTGTGTTGATGTGCCTGCCCGGAGCT
GCCGCACTCAAGGACACGATCAAGAACCGCATGAAGTTGGCGGACAAGTA
CATGGACGAGAACCCCGTGGATGAGGGAATGGAAGCCATGGCCCGACAAC
ACATGCTGAAGATGCCTGACCCAAAGGAGCGTGAGCAGCTCATGAAGAAC
ATGCAACAAATGGACACAGGCAAGGTCCGCACTATTACCCGTCAGGCTAT
GGTGAAGCACTTCACTGTCGATGAGCTCGAGTATCTCATCAATATGTATA
GCACTCACACGGGTAAGACATTGATGAGCAAAATCGGCGCGTATTCGGCC
GAGATTCAGCCTCAGATCGCCGACGTCATGAAGGATATCATGGAGAACAA
CGTAGTGTTTTACCAGGAGCAGGAGAAGCGGGCGCGGGCCGGTGAGTTGG
ACCATGTGACTACTGAATTCGACAAGGAGAAGAAGCCGGAGGCAATTCAG
TTGCCGCCGATGAATCAGAAGATCAAGGATGGAGTTTACATGGGAAGCAG
CATGAAGGATGCCCGGCCAGTGAAGGATGAGGTCTAAATGAATCAACAGA
GAAGAGGGCAAGAGCATTTGTCTAATCATTGATGTGGGGTGAAGAGGAGT
GAAGATTTTCCTCGTCCAATTTTAATGTTCAACTGCGCCCGAAGACGGGA
GAAGGAAAAAATCCATTTTAAAACTCAACAAAAACAACAGAAACAAGAGG
CCAATAAAGAAGAAGAAAAAGGAGGAGGAAGAGAGGAAGCCTATGGCATG
GATGCACGCATAGAGAGGACAGTTGCTGTCGTTCGGTCCCTCTGCATCAG
CGCCATGCGGCGCGGAGACAGTTTATGCGGGGCTGGCTGCAAATCCCCAT
CGGTAGGAGGGGAAAAAAATAAAAAGGAAAACAAGCGAAGAAAAGGAAGA
AAGAAGGCATCACTACCGTCATAAGTCAAAGTACAGAAGACACCTACTCA
AACAGCATGATGACCCACAGGACGAGAGCAGCGATAGGGCGCATGGGAGT
GGAAGCAGTAGCGGCAGCAGCAGCGGCGGCGGCCACCCGCCTCTTCTTGA
AGAGAGAAAGAACCACGACTCAGACTAGCGGAGGGTATTAAAATCTGGCA
ACATCCTTGCCTTCTCCTCTTTACGAGGTGGAGACAGGAACATGGGAGTG
GTACCCGAGCAAGTCAACTGAAAACCATAGAAATTCACCCAAAGAGTACA
TCAAAACAAATAAACCATAAAGCCAGTGGGATAAAAGGCAGT
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protein sequence of NO13G02850.1

>NO13G02850.1-protein ID=NO13G02850.1-protein|Name=NO13G02850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MRTMAPWLVHLTLALGAVLMCLPGAAALKDTIKNRMKLADKYMDENPVDE
GMEAMARQHMLKMPDPKEREQLMKNMQQMDTGKVRTITRQAMVKHFTVDE
LEYLINMYSTHTGKTLMSKIGAYSAEIQPQIADVMKDIMENNVVFYQEQE
KRARAGELDHVTTEFDKEKKPEAIQLPPMNQKIKDGVYMGSSMKDARPVK
DEV*
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mRNA from alignment at chr13:794247..796192+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02850.1 ID=NO13G02850.1|Name=NO13G02850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1946bp|location=Sequence derived from alignment at chr13:794247..796192+ (Nannochloropsis oceanica)
ACAGAAGAAACCATACCCCAGTATCATGAGGACCATGGCACCCTGGCTCG
TCCACCTGACTCTTGCCCTGGGGGCTGTGTTGATGTGCCTGCCCGGAGCT
GCCGCACTCAAGGACACGATCAAGAACCGCATGAAGTTGGCGGACAAGTA
CATGGACGAGAACCCCGTGGATGAGGGAATGGAAGCCATGGCCCGGTACG
GAAGTGGGGTGGATGTGGGTGGGTGCTATGGGGCATCACGAATCAATTGA
GGGGGTGATGCGGATGGCTTGGTTCCTCGCGGACCTGGTCATCGAGGGAG
AAAGCGAATTGAATGACGAGGTATAGGACCAAAACTTCGACACACTCACG
TTACTATGTGCTGACAACTAAATGCTCGCGGTGAGGCGCGCCAAGCAGCA
GGTACTCACCCTCCTTCGCCCCCACTCCCTTCCTCCTCTAGACAACACAT
GCTGAAGATGCCTGACCCAAAGGAGCGTGAGCAGCTCATGAAGAACATGC
AACAAATGGACACAGGCAAGGTCCGCACTATTACCCGTCAGGCTATGGTG
AAGCACTTCACTGTCGATGAGCTCGAGTATCTCATCAATATGTATAGGTA
AGCCCCCTTCCCTTCTCTTTCTCTCCCCTCCCTTCAGTACCATGTTCGTC
GTCTTCAATGCCAAAGCACCAGAAGCTTCTTGAACCAAATGACCAACTGA
GGGTGTCACAAGTCAAGCCATAACGCGTTCCCCTCAATTTTTTAGTGGGG
GTTCTGCTCCCTCCCTTCCAAAATTGCGAGACGGCCAAGGTCTAATGCAG
TGCCTCCCCCGCATAGAGGGTTCGGTGTTTTTCCCTGTCGGAGGGCGCCC
GGTACAGCAACGTGGAGTCTAATAAGATGTAGGAGAATAAAGAGGAAATG
ATCTCATCCATTATACCCCCTCTTCCCCCGTCCCTCTCCTCCCTCCCACC
CGCAGCACTCACACGGGTAAGACATTGATGAGCAAAATCGGCGCGTATTC
GGCCGAGATTCAGCCTCAGATCGCCGACGTCATGAAGGATATCATGGAGA
ACAACGTAGTGTTTTACCAGGAGCAGGAGAAGCGGGCGCGGGCCGGTGAG
TTGGACCATGTGACTACTGAATTCGACAAGGAGAAGAAGCCGGAGGCAAT
TCAGTTGCCGCCGATGAATCAGAAGATCAAGGATGGAGTTTACATGGGAA
GCAGCATGAAGGATGCCCGGCCAGTGAAGGATGAGGTCTAAATGAATCAA
CAGAGAAGAGGGCAAGAGCATTTGTCTAATCATTGATGTGGGGTGAAGAG
GAGTGAAGATTTTCCTCGTCCAATTTTAATGTTCAACTGCGCCCGAAGAC
GGGAGAAGGAAAAAATCCATTTTAAAACTCAACAAAAACAACAGAAACAA
GAGGCCAATAAAGAAGAAGAAAAAGGAGGAGGAAGAGAGGAAGCCTATGG
CATGGATGCACGCATAGAGAGGACAGTTGCTGTCGTTCGGTCCCTCTGCA
TCAGCGCCATGCGGCGCGGAGACAGTTTATGCGGGGCTGGCTGCAAATCC
CCATCGGTAGGAGGGGAAAAAAATAAAAAGGAAAACAAGCGAAGAAAAGG
AAGAAAGAAGGCATCACTACCGTCATAAGTCAAAGTACAGAAGACACCTA
CTCAAACAGCATGATGACCCACAGGACGAGAGCAGCGATAGGGCGCATGG
GAGTGGAAGCAGTAGCGGCAGCAGCAGCGGCGGCGGCCACCCGCCTCTTC
TTGAAGAGAGAAAGAACCACGACTCAGACTAGCGGAGGGTATTAAAATCT
GGCAACATCCTTGCCTTCTCCTCTTTACGAGGTGGAGACAGGAACATGGG
AGTGGTACCCGAGCAAGTCAACTGAAAACCATAGAAATTCACCCAAAGAG
TACATCAAAACAAATAAACCATAAAGCCAGTGGGATAAAAGGCAGT
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Coding sequence (CDS) from alignment at chr13:794247..796192+

>NO13G02850.1 ID=NO13G02850.1|Name=NO13G02850.1|organism=Nannochloropsis oceanica|type=CDS|length=612bp|location=Sequence derived from alignment at chr13:794247..796192+ (Nannochloropsis oceanica)
ATGAGGACCATGGCACCCTGGCTCGTCCACCTGACTCTTGCCCTGGGGGC
TGTGTTGATGTGCCTGCCCGGAGCTGCCGCACTCAAGGACACGATCAAGA
ACCGCATGAAGTTGGCGGACAAGTACATGGACGAGAACCCCGTGGATGAG
GGAATGGAAGCCATGGCCCGACAACACATGCTGAAGATGCCTGACCCAAA
GGAGCGTGAGCAGCTCATGAAGAACATGCAACAAATGGACACAGGCAAGG
TCCGCACTATTACCCGTCAGGCTATGGTGAAGCACTTCACTGTCGATGAG
CTCGAGTATCTCATCAATATGTATAGCACTCACACGGGTAAGACATTGAT
GAGCAAAATCGGCGCGTATTCGGCCGAGATTCAGCCTCAGATCGCCGACG
TCATGAAGGATATCATGGAGAACAACGTAGTGTTTTACCAGGAGCAGGAG
AAGCGGGCGCGGGCCGGTGAGTTGGACCATGTGACTACTGAATTCGACAA
GGAGAAGAAGCCGGAGGCAATTCAGTTGCCGCCGATGAATCAGAAGATCA
AGGATGGAGTTTACATGGGAAGCAGCATGAAGGATGCCCGGCCAGTGAAG
GATGAGGTCTAA
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Synonyms
Publications