NO13G02730, NO13G02730 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G02730 vs. NCBI_GenBank
Match: XP_023843666.1 (lys-63-specific deubiquitinase BRCC36 [Salvelinus alpinus] >XP_023843667.1 lys-63-specific deubiquitinase BRCC36 [Salvelinus alpinus]) HSP 1 Score: 148.3 bits (373), Expect = 6.700e-32 Identity = 76/159 (47.80%), Postives = 103/159 (64.78%), Query Frame = 0 Query: 1 MSLHRVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEVQHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSHPHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQSVPGGRGRE 160 M++ VHL +A C+ ALSTE++EVM + +G T N + V+++ R+D+RKDRVE+ EQL+ A A L++ TGR R++GW+HSHPHITV PSHVD++TQA YQ MD GF+GLI + F +D Q GRV T FQSV +G E Sbjct: 1 MAVSAVHLESDAFLVCMNHALSTEKEEVMGLCIGEVDT------NRIVHIHSVIILRRSDKRKDRVEISPEQLSSAATEAERLAEMTGRLMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTQTGRVLYTCFQSVQAQKGSE 153
BLAST of NO13G02730 vs. NCBI_GenBank
Match: EOY26535.1 (Mov34/MPN/PAD-1 family protein isoform 2 [Theobroma cacao]) HSP 1 Score: 147.9 bits (372), Expect = 8.700e-32 Identity = 91/220 (41.36%), Postives = 129/220 (58.64%), Query Frame = 0 Query: 1 MSLHRVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEVQHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSHPHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQSVPGGRGREGGRALMMDLDNGFIRIDDEDSTSYVHH------SIGLESTGVETGTVRKGIPIALVPSAGG 215 MSL V ++ + C+T ALSTE +E+M +LLG + N+ A + SR+DRRKDRVE EQLA A A ++ +TGR TR++GW+HSHPHITVLPSHVD++TQA YQ +D+GF+GLI + F +D + GR+++ AFQS G + G + ++ + ID E S S + S ++S +TG R + LV S GG Sbjct: 1 MSLTCVKMSEDVWLTCLTHALSTETEEIMGLLLG--DIEYSKDGNVTALIWGASPQSRSDRRKDRVETNPEQLAAASAQADRMTASTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDSGFIGLIFSCFSEDTNKV-GRIQVIAFQSSDGKQSHASGPVALSPVNRSSV-IDLESSLSSSENPLVTLGSAKVDSPLQDTGDSR----LTLVSSKGG 212
BLAST of NO13G02730 vs. NCBI_GenBank
Match: XP_007247125.1 (lys-63-specific deubiquitinase BRCC36 [Astyanax mexicanus]) HSP 1 Score: 147.9 bits (372), Expect = 8.700e-32 Identity = 75/159 (47.17%), Postives = 103/159 (64.78%), Query Frame = 0 Query: 1 MSLHRVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEVQHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSHPHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQSVPGGRGRE 160 M++ VHL +A C+ ALSTE++EVM + +G T N + V+++ R+D+RKDRVE+ EQL+ A A L++ TGR R++GW+HSHPHITV PSHVD++TQA YQ MD GF+GLI + F +D + GRV T FQSV +G E Sbjct: 1 MAVSAVHLESDAFLVCMNHALSTEKEEVMGLCIGEVDT------NRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAEMTGRPVRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSVQAQKGSE 153
BLAST of NO13G02730 vs. NCBI_GenBank
Match: GAQ78756.1 (putative Mov34/MPN/PAD-1 family protein [Klebsormidium nitens]) HSP 1 Score: 147.9 bits (372), Expect = 8.700e-32 Identity = 79/156 (50.64%), Postives = 100/156 (64.10%), Query Frame = 0 Query: 1 MSLHRVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEVQHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSHPHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQSVPGGR 157 MSL V +T E CVT ALSTE++E+M +LLG + A V +R+DRRKDRVE EQLA A A LS +GRETR++GW+HSHPHITV PSHVD+ TQ YQ +D GF+GLI + F +D + GR+++TAFQS P R Sbjct: 1 MSLTDVEVTAEVWMTCVTHALSTEKEEIMGLLLGDVLVY--GDGRATARVFSAAPQTRSDRRKDRVETNPEQLAAAAAEAERLSVLSGRETRVIGWYHSHPHITVFPSHVDVATQGMYQMLDQGFIGLIFSCFSEDASKV-GRIQVTAFQSAPANR 153
BLAST of NO13G02730 vs. NCBI_GenBank
Match: KZV56065.1 (hypothetical protein F511_06082 [Dorcoceras hygrometricum]) HSP 1 Score: 147.9 bits (372), Expect = 8.700e-32 Identity = 78/154 (50.65%), Postives = 105/154 (68.18%), Query Frame = 0 Query: 1 MSLHRVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEVQHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSHPHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQSVPG 155 MSL V ++ E C+T ALSTE +E+M +LLG H G N+ A + + R+DR+KDRVE EQL A A +S ATG TR++GW+HSHPHITVLPSHVD++TQA YQ +D+GF+GLI + F +D Q+ GR+++TAFQS+ G Sbjct: 1 MSLTSVKMSEEVWLTCLTHALSTETEEIMGLLLGD-IKHSRNG-NVTALIWGALPQPRSDRQKDRVETNPEQLTAASAQAERMSIATGITTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDSGFVGLIFSCFNED-AQKVGRIQVTAFQSLDG 151
BLAST of NO13G02730 vs. NCBI_GenBank
Match: XP_017556653.1 (PREDICTED: lys-63-specific deubiquitinase BRCC36 [Pygocentrus nattereri]) HSP 1 Score: 147.9 bits (372), Expect = 8.700e-32 Identity = 75/159 (47.17%), Postives = 103/159 (64.78%), Query Frame = 0 Query: 1 MSLHRVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEVQHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSHPHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQSVPGGRGRE 160 M++ VHL +A C+ ALSTE++EVM + +G T N + V+++ R+D+RKDRVE+ EQL+ A A L++ TGR R++GW+HSHPHITV PSHVD++TQA YQ MD GF+GLI + F +D + GRV T FQSV +G E Sbjct: 1 MAVSAVHLESDAFLVCMNHALSTEKEEVMGLCIGEVDT------NRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAEMTGRPVRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSVQAQKGSE 153
BLAST of NO13G02730 vs. NCBI_GenBank
Match: XP_007023913.2 (PREDICTED: lys-63-specific deubiquitinase BRCC36 [Theobroma cacao]) HSP 1 Score: 147.9 bits (372), Expect = 8.700e-32 Identity = 91/220 (41.36%), Postives = 129/220 (58.64%), Query Frame = 0 Query: 1 MSLHRVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEVQHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSHPHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQSVPGGRGREGGRALMMDLDNGFIRIDDEDSTSYVHH------SIGLESTGVETGTVRKGIPIALVPSAGG 215 MSL V ++ + C+T ALSTE +E+M +LLG + N+ A + SR+DRRKDRVE EQLA A A ++ +TGR TR++GW+HSHPHITVLPSHVD++TQA YQ +D+GF+GLI + F +D + GR+++ AFQS G + G + ++ + ID E S S + S ++S +TG R + LV S GG Sbjct: 1 MSLTCVKMSEDVWLTCLTHALSTETEEIMGLLLG--DIEYSKDGNVTALIWGASPQSRSDRRKDRVETNPEQLAAASAQADRMTASTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDSGFIGLIFSCFSEDTNKV-GRIQVIAFQSSDGKQSHASGPVALSPVNRSSV-IDLESSLSSSENPLVTLGSAKVDSPLQDTGDSR----LTLVSSKGG 212
BLAST of NO13G02730 vs. NCBI_GenBank
Match: XP_003543672.1 (PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Glycine max] >KHN44160.1 Lys-63-specific deubiquitinase BRCC36 [Glycine soja] >KRH23553.1 hypothetical protein GLYMA_13G363400 [Glycine max]) HSP 1 Score: 147.5 bits (371), Expect = 1.100e-31 Identity = 76/154 (49.35%), Postives = 106/154 (68.83%), Query Frame = 0 Query: 1 MSLHRVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEVQHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSHPHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQSVPG 155 MSL V ++ E CVT ALSTE +E+M +LLG H G ++ A + +R+DRRKDRVE EQLA A +A ++ +TGR TR++GW+HSHPHITVLPSHVD++TQA YQ +D+GF+GLI + + +D+ + GR+++ AFQS G Sbjct: 1 MSLTSVKMSEEVWLSCVTHALSTETEEIMGLLLGD-IQHSKNG-SVTALIWGASPQTRSDRRKDRVETNPEQLAAASALADRMTTSTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDSGFIGLIFSCYSEDVNKV-GRIQVIAFQSSDG 151
BLAST of NO13G02730 vs. NCBI_GenBank
Match: XP_006632679.1 (PREDICTED: lys-63-specific deubiquitinase BRCC36 [Lepisosteus oculatus]) HSP 1 Score: 147.5 bits (371), Expect = 1.100e-31 Identity = 75/159 (47.17%), Postives = 103/159 (64.78%), Query Frame = 0 Query: 1 MSLHRVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEVQHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSHPHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQSVPGGRGRE 160 M++ VHL +A C+ ALSTE++EVM + +G T N + V+++ R+D+RKDRVE+ EQL+ A A L++ TGR R++GW+HSHPHITV PSHVD++TQA YQ MD GF+GLI + F +D + GRV T FQSV +G E Sbjct: 1 MAVSAVHLESDAFLVCMNHALSTEKEEVMGLCIGEVDT------NRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAEMTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSVQAQKGSE 153
BLAST of NO13G02730 vs. NCBI_GenBank
Match: NP_001134356.1 (lys-63-specific deubiquitinase BRCC36 [Salmo salar] >B5X8M4.1 RecName: Full=Lys-63-specific deubiquitinase BRCC36; AltName: Full=BRCA1-A complex subunit BRCC36; AltName: Full=BRCA1/BRCA2-containing complex subunit 3; AltName: Full=BRCA1/BRCA2-containing complex subunit 36; AltName: Full=BRISC complex subunit BRCC36 >ACI67194.1 BRCA1/BRCA2-containing complex subunit 3 [Salmo salar]) HSP 1 Score: 147.5 bits (371), Expect = 1.100e-31 Identity = 75/159 (47.17%), Postives = 103/159 (64.78%), Query Frame = 0 Query: 1 MSLHRVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEVQHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSHPHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQSVPGGRGRE 160 M++ VHL +A C+ ALSTE++EVM + +G T N + V+++ R+D+RKDRVE+ EQL+ A A L++ TGR R++GW+HSHPHITV PSHVD++TQA YQ MD GF+GLI + F +D + GRV T FQSV +G E Sbjct: 1 MAVSAVHLESDAFLVCMNHALSTEKEEVMGLCIGEVDT------NRIVHIHSVIILRRSDKRKDRVEISPEQLSSAATEAERLAEMTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSVQAQKGSE 153 The following BLAST results are available for this feature:
BLAST of NO13G02730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G02730 ID=NO13G02730|Name=NO13G02730|organism=Nannochloropsis oceanica|type=gene|length=1891bpback to top protein sequence of NO13G02730.1 >NO13G02730.1-protein ID=NO13G02730.1-protein|Name=NO13G02730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=520bpback to top Synonyms
Publications
|