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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:749705..751595 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G02730.1 vs.
Match: EWM21939.1 (brca1 brca2-containing complex subunit 3 [Nannochloropsis gaditana]) HSP 1 Score: 449.1 bits (1154), Expect = 1.800e-122 Identity = 284/549 (51.73%), Postives = 351/549 (63.93%), Query Frame = 0
Query: 1 MSLHRVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEVQHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSHPHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQSVP---GGRGREGGRALMMDLDNGFIRIDDEDSTSYVHHSIGLESTGVETGTVRKGIPIALVP-SAGGDGGREGGKGAGGNDGPTTDAMRCVVSLQEVLMQEERYFYEAAAQANLRNNAISTSTSTSTSTSISTSTSSCSRAGDVHALYNAAVYGKALSSLLEESAIPLIHTLESVLLNVRREKERVKRAVEKMEEHSRSSVSVAAGSMEGVMSVKEGGRKGRRGNGMMDVD----------------------ECQPSASPYSSSVLAVSRPEILKKAAEGWQMRRMDGNEDY--DVIVRLTREYALLPFGG------EGFGQWWLSVGEEKGRLTRIEGNRNGNHTVTFGFVVARPGERDSRGEKEKETIVQVLGSQDSVTFWCRRVRPIVSSDANL 516
MSL RV +THEAL CC+ QALSTE+QEVMSVLLGTW P TGE++EAEV HV+VM+RTDRRKDRVEVGYEQLAEAE++ASAL A+G++ RI+GWFHSHPHITVLPSHVD++TQAQYQAMDAGF GLICAVFQDDLKQQ GRV +TAFQSVP RG GG + G ++++E ++ G +G V K IPI+L+P S G+ + DAMRC+VSLQEVLM+EERYFYE A +ANLRNN S + + +S SS R G VHAL+NAA+Y +ALSSLLEESA+PL +TLESVLLN+RRE RV+R+ E +E S + E EG +G G MMDV+ P SPYS+S+LA SRP+IL++AAEG M+ + E +V V L REY P GG GFG+W L VG+ +GRLTR+ +G + ++FG AR G E + E IVQ+LGS D V+FWCRRV+PIV A +
Sbjct: 1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPAFAAARG-GGGEGEGSSMARGLAQVENE---PFLPFDAAAGEAG--SGFVCKRIPISLLPGSPLSPLWAWRGETSTSYSDRACDAMRCLVSLQEVLMREERYFYECAVRANLRNN--SQGGAGRGARDVSIRESSQGRIGAVHALHNAAIYSRALSSLLEESALPLANTLESVLLNLRREVRRVRRSTEGLEGDLPSERAPPTERDE------EGEARGGNGGEMMDVEGPYQQASLLGGNTARKDKAGASSSPPPPSPYSASILASSRPKILRRAAEGSFMQSLLQEEGLRGEVRVSLVREY---PSGGGIDGNISGFGEWALEVGKLRGRLTRL--YESGGNMMSFGLAGARKG-----CEVQNERIVQLLGSDDLVSFWCRRVKPIVCPTATI 525
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G02730.1 ID=NO13G02730.1|Name=NO13G02730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1685bp ACAGCACAATCCAAGGGTTATATCTGAACCACGAGCGAGACGCGCTGCTC CGTTTGTTTGCTTAGCCTCGTTGGCCCCATTAATAAGAAATTAACCTCCT CACCCGTCCCTCTACCCTCAAGCCGATGTCCCTTCACCGTGTGCACCTCA CCCATGAGGCCTTGTTTTGCTGCGTCACTCAAGCCCTGTCGACAGAGCAA CAAGAGGTCATGTCCGTGCTTCTGGGCACCTGGACCACGCACCCCACCAC GGGCGAAAACATCGAAGCGGAGGTCCAGCACGTCGTCGTAATGAGCCGCA CGGACCGGCGGAAAGACAGGGTGGAAGTTGGTTACGAGCAACTCGCGGAA GCTGAACAGGTTGCCTCCGCCCTCAGCAAAGCCACGGGCCGAGAGACCCG TATCCTGGGTTGGTTTCACTCTCACCCACATATCACCGTGTTGCCTAGCC ATGTTGACTTACAAACACAAGCGCAATACCAGGCAATGGATGCTGGGTTT TTGGGATTGATTTGTGCGGTGTTTCAAGATGATCTCAAGCAGCAGAGAGG ACGGGTAGAGATTACGGCGTTTCAGTCCGTGCCTGGTGGTCGAGGGAGGG AGGGAGGGAGGGCCCTAATGATGGATTTGGATAATGGTTTTATTCGTATC GATGACGAAGATTCGACGTCGTATGTGCATCACAGTATAGGGCTGGAATC GACAGGGGTGGAGACCGGGACTGTGAGGAAAGGCATTCCGATAGCTTTAG TGCCTTCAGCAGGAGGAGATGGTGGAAGGGAGGGAGGGAAGGGAGCAGGG GGCAATGATGGGCCGACCACGGACGCGATGCGTTGCGTGGTGTCTTTGCA GGAGGTTTTGATGCAAGAGGAACGTTACTTTTACGAAGCTGCTGCTCAAG CCAACCTACGGAACAATGCCATAAGCACCAGCACCAGCACCAGCACCAGC ACCAGCATCAGCACCAGCACCAGCAGCTGTAGTAGGGCGGGGGACGTCCA TGCCTTGTACAATGCCGCTGTCTATGGCAAAGCTCTTTCTTCTCTCTTGG AAGAGTCGGCGATACCCCTGATTCATACCTTGGAAAGCGTCCTCCTTAAC GTGCGGCGGGAGAAAGAGCGAGTGAAGCGAGCCGTGGAGAAAATGGAGGA GCATTCAAGGAGCAGCGTCAGCGTCGCCGCTGGTAGCATGGAAGGAGTGA TGAGCGTGAAGGAGGGGGGAAGGAAAGGAAGAAGAGGGAATGGGATGATG GACGTGGATGAGTGTCAACCTTCTGCTTCTCCCTACAGTTCTAGTGTACT TGCAGTCAGTCGACCCGAGATCCTAAAAAAGGCAGCGGAGGGTTGGCAAA TGCGAAGAATGGATGGTAATGAGGACTATGATGTGATAGTAAGATTGACA CGAGAATATGCTCTCTTACCTTTCGGAGGCGAGGGGTTTGGTCAGTGGTG GCTGTCTGTAGGGGAGGAAAAGGGAAGGCTGACGCGCATTGAGGGGAATA GGAATGGCAACCACACGGTGACCTTTGGTTTTGTCGTGGCCAGGCCAGGA GAGCGGGACAGTAGAGGGGAAAAGGAGAAAGAGACAATTGTCCAAGTCTT GGGATCACAGGACTCGGTGACCTTCTGGTGCCGGCGGGTGCGACCCATTG TGAGCTCCGATGCCAACCTCCTGCCTCCATCATGA back to topprotein sequence of NO13G02730.1 >NO13G02730.1-protein ID=NO13G02730.1-protein|Name=NO13G02730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=520bp MSLHRVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEV QHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSH PHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQ SVPGGRGREGGRALMMDLDNGFIRIDDEDSTSYVHHSIGLESTGVETGTV RKGIPIALVPSAGGDGGREGGKGAGGNDGPTTDAMRCVVSLQEVLMQEER YFYEAAAQANLRNNAISTSTSTSTSTSISTSTSSCSRAGDVHALYNAAVY GKALSSLLEESAIPLIHTLESVLLNVRREKERVKRAVEKMEEHSRSSVSV AAGSMEGVMSVKEGGRKGRRGNGMMDVDECQPSASPYSSSVLAVSRPEIL KKAAEGWQMRRMDGNEDYDVIVRLTREYALLPFGGEGFGQWWLSVGEEKG RLTRIEGNRNGNHTVTFGFVVARPGERDSRGEKEKETIVQVLGSQDSVTF WCRRVRPIVSSDANLLPPS* back to topmRNA from alignment at chr13:749705..751595+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G02730.1 ID=NO13G02730.1|Name=NO13G02730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1891bp|location=Sequence derived from alignment at chr13:749705..751595+ (Nannochloropsis oceanica) ACAGCACAATCCAAGGGTTATATCTGAACCACGAGCGAGACGCGCTGCTC
CGTTTGTTTGCTTAGCCTCGTTGGCCCCATTAATAAGAAATTAACCTCCT
CACCCGTCCCTCTACCCTCAAGCCGATGTCCCTTCACCGTGTGCACCTCA
CCCATGAGGCCTTGTTTTGCTGCGTCACTCAAGCCCTGTCGACAGAGCAA
CAAGAGGTCATGTCCGTGCTTCTGGGCACCTGGACCACGCACCCCACCAC
GGGCGAAAACATCGAAGCGGAGGTCCAGCACGTCGTCGTAATGAGCCGCA
CGGACCGGCGGAAAGACAGGTAAAATCTGCCTGTGCTTCATTCCTCCCTC
CCCCCCCTCCATTCTTTTCTTCTTCATCTCCCTGAAGCGCTGAGCCATCG
AAGCACAAGTACATAACATAATCGTTCGCGCCATCTGCTGCCCTTCATTT
CCTCCCTTCCTCCTTCCCTCCCTCCAAGACTCTCACTCATCCTCCATATC
ACCACCACCACTGTACAATGCTCAGGGTGGAAGTTGGTTACGAGCAACTC
GCGGAAGCTGAACAGGTTGCCTCCGCCCTCAGCAAAGCCACGGGCCGAGA
GACCCGTATCCTGGGTTGGTTTCACTCTCACCCACATATCACCGTGTTGC
CTAGCCATGTTGACTTACAAACACAAGCGCAATACCAGGCAATGGATGCT
GGGTTTTTGGGATTGATTTGTGCGGTGTTTCAAGATGATCTCAAGCAGCA
GAGAGGACGGGTAGAGATTACGGCGTTTCAGTCCGTGCCTGGTGGTCGAG
GGAGGGAGGGAGGGAGGGCCCTAATGATGGATTTGGATAATGGTTTTATT
CGTATCGATGACGAAGATTCGACGTCGTATGTGCATCACAGTATAGGGCT
GGAATCGACAGGGGTGGAGACCGGGACTGTGAGGAAAGGCATTCCGATAG
CTTTAGTGCCTTCAGCAGGAGGAGATGGTGGAAGGGAGGGAGGGAAGGGA
GCAGGGGGCAATGATGGGCCGACCACGGACGCGATGCGTTGCGTGGTGTC
TTTGCAGGAGGTTTTGATGCAAGAGGAACGTTACTTTTACGAAGCTGCTG
CTCAAGCCAACCTACGGAACAATGCCATAAGCACCAGCACCAGCACCAGC
ACCAGCACCAGCATCAGCACCAGCACCAGCAGCTGTAGTAGGGCGGGGGA
CGTCCATGCCTTGTACAATGCCGCTGTCTATGGCAAAGCTCTTTCTTCTC
TCTTGGAAGAGTCGGCGATACCCCTGATTCATACCTTGGAAAGCGTCCTC
CTTAACGTGCGGCGGGAGAAAGAGCGAGTGAAGCGAGCCGTGGAGAAAAT
GGAGGAGCATTCAAGGAGCAGCGTCAGCGTCGCCGCTGGTAGCATGGAAG
GAGTGATGAGCGTGAAGGAGGGGGGAAGGAAAGGAAGAAGAGGGAATGGG
ATGATGGACGTGGATGAGTGTCAACCTTCTGCTTCTCCCTACAGTTCTAG
TGTACTTGCAGTCAGTCGACCCGAGATCCTAAAAAAGGCAGCGGAGGGTT
GGCAAATGCGAAGAATGGATGGTAATGAGGACTATGATGTGATAGTAAGA
TTGACACGAGAATATGCTCTCTTACCTTTCGGAGGCGAGGGGTTTGGTCA
GTGGTGGCTGTCTGTAGGGGAGGAAAAGGGAAGGCTGACGCGCATTGAGG
GGAATAGGAATGGCAACCACACGGTGACCTTTGGTTTTGTCGTGGCCAGG
CCAGGAGAGCGGGACAGTAGAGGGGAAAAGGAGAAAGAGACAATTGTCCA
AGTCTTGGGATCACAGGACTCGGTGACCTTCTGGTGCCGGCGGGTGCGAC
CCATTGTGAGCTCCGATGCCAACCTCCTGCCTCCATCATGA back to topCoding sequence (CDS) from alignment at chr13:749705..751595+ >NO13G02730.1 ID=NO13G02730.1|Name=NO13G02730.1|organism=Nannochloropsis oceanica|type=CDS|length=1560bp|location=Sequence derived from alignment at chr13:749705..751595+ (Nannochloropsis oceanica) ATGTCCCTTCACCGTGTGCACCTCACCCATGAGGCCTTGTTTTGCTGCGT CACTCAAGCCCTGTCGACAGAGCAACAAGAGGTCATGTCCGTGCTTCTGG GCACCTGGACCACGCACCCCACCACGGGCGAAAACATCGAAGCGGAGGTC CAGCACGTCGTCGTAATGAGCCGCACGGACCGGCGGAAAGACAGGGTGGA AGTTGGTTACGAGCAACTCGCGGAAGCTGAACAGGTTGCCTCCGCCCTCA GCAAAGCCACGGGCCGAGAGACCCGTATCCTGGGTTGGTTTCACTCTCAC CCACATATCACCGTGTTGCCTAGCCATGTTGACTTACAAACACAAGCGCA ATACCAGGCAATGGATGCTGGGTTTTTGGGATTGATTTGTGCGGTGTTTC AAGATGATCTCAAGCAGCAGAGAGGACGGGTAGAGATTACGGCGTTTCAG TCCGTGCCTGGTGGTCGAGGGAGGGAGGGAGGGAGGGCCCTAATGATGGA TTTGGATAATGGTTTTATTCGTATCGATGACGAAGATTCGACGTCGTATG TGCATCACAGTATAGGGCTGGAATCGACAGGGGTGGAGACCGGGACTGTG AGGAAAGGCATTCCGATAGCTTTAGTGCCTTCAGCAGGAGGAGATGGTGG AAGGGAGGGAGGGAAGGGAGCAGGGGGCAATGATGGGCCGACCACGGACG CGATGCGTTGCGTGGTGTCTTTGCAGGAGGTTTTGATGCAAGAGGAACGT TACTTTTACGAAGCTGCTGCTCAAGCCAACCTACGGAACAATGCCATAAG CACCAGCACCAGCACCAGCACCAGCACCAGCATCAGCACCAGCACCAGCA GCTGTAGTAGGGCGGGGGACGTCCATGCCTTGTACAATGCCGCTGTCTAT GGCAAAGCTCTTTCTTCTCTCTTGGAAGAGTCGGCGATACCCCTGATTCA TACCTTGGAAAGCGTCCTCCTTAACGTGCGGCGGGAGAAAGAGCGAGTGA AGCGAGCCGTGGAGAAAATGGAGGAGCATTCAAGGAGCAGCGTCAGCGTC GCCGCTGGTAGCATGGAAGGAGTGATGAGCGTGAAGGAGGGGGGAAGGAA AGGAAGAAGAGGGAATGGGATGATGGACGTGGATGAGTGTCAACCTTCTG CTTCTCCCTACAGTTCTAGTGTACTTGCAGTCAGTCGACCCGAGATCCTA AAAAAGGCAGCGGAGGGTTGGCAAATGCGAAGAATGGATGGTAATGAGGA CTATGATGTGATAGTAAGATTGACACGAGAATATGCTCTCTTACCTTTCG GAGGCGAGGGGTTTGGTCAGTGGTGGCTGTCTGTAGGGGAGGAAAAGGGA AGGCTGACGCGCATTGAGGGGAATAGGAATGGCAACCACACGGTGACCTT TGGTTTTGTCGTGGCCAGGCCAGGAGAGCGGGACAGTAGAGGGGAAAAGG AGAAAGAGACAATTGTCCAAGTCTTGGGATCACAGGACTCGGTGACCTTC TGGTGCCGGCGGGTGCGACCCATTGTGAGCTCCGATGCCAACCTCCTGCC TCCATCATGA back to top
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