NO13G02730.1, NO13G02730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02730.1
Unique NameNO13G02730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1685
Alignment locationchr13:749705..751595 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:749705..751595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G02730.1 vs.
Match: EWM21939.1 (brca1 brca2-containing complex subunit 3 [Nannochloropsis gaditana])

HSP 1 Score: 449.1 bits (1154), Expect = 1.800e-122
Identity = 284/549 (51.73%), Postives = 351/549 (63.93%), Query Frame = 0
Query:    1 MSLHRVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEVQHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSHPHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQSVP---GGRGREGGRALMMDLDNGFIRIDDEDSTSYVHHSIGLESTGVETGTVRKGIPIALVP-SAGGDGGREGGKGAGGNDGPTTDAMRCVVSLQEVLMQEERYFYEAAAQANLRNNAISTSTSTSTSTSISTSTSSCSRAGDVHALYNAAVYGKALSSLLEESAIPLIHTLESVLLNVRREKERVKRAVEKMEEHSRSSVSVAAGSMEGVMSVKEGGRKGRRGNGMMDVD----------------------ECQPSASPYSSSVLAVSRPEILKKAAEGWQMRRMDGNEDY--DVIVRLTREYALLPFGG------EGFGQWWLSVGEEKGRLTRIEGNRNGNHTVTFGFVVARPGERDSRGEKEKETIVQVLGSQDSVTFWCRRVRPIVSSDANL 516
            MSL RV +THEAL CC+ QALSTE+QEVMSVLLGTW   P TGE++EAEV HV+VM+RTDRRKDRVEVGYEQLAEAE++ASAL  A+G++ RI+GWFHSHPHITVLPSHVD++TQAQYQAMDAGF GLICAVFQDDLKQQ GRV +TAFQSVP     RG  GG      +  G  ++++E    ++         G  +G V K IPI+L+P S         G+ +        DAMRC+VSLQEVLM+EERYFYE A +ANLRNN  S   +   +  +S   SS  R G VHAL+NAA+Y +ALSSLLEESA+PL +TLESVLLN+RRE  RV+R+ E +E    S  +      E      EG  +G  G  MMDV+                         P  SPYS+S+LA SRP+IL++AAEG  M+ +   E    +V V L REY   P GG       GFG+W L VG+ +GRLTR+    +G + ++FG   AR G      E + E IVQ+LGS D V+FWCRRV+PIV   A +
Sbjct:    1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPAFAAARG-GGGEGEGSSMARGLAQVENE---PFLPFDAAAGEAG--SGFVCKRIPISLLPGSPLSPLWAWRGETSTSYSDRACDAMRCLVSLQEVLMREERYFYECAVRANLRNN--SQGGAGRGARDVSIRESSQGRIGAVHALHNAAIYSRALSSLLEESALPLANTLESVLLNLRREVRRVRRSTEGLEGDLPSERAPPTERDE------EGEARGGNGGEMMDVEGPYQQASLLGGNTARKDKAGASSSPPPPSPYSASILASSRPKILRRAAEGSFMQSLLQEEGLRGEVRVSLVREY---PSGGGIDGNISGFGEWALEVGKLRGRLTRL--YESGGNMMSFGLAGARKG-----CEVQNERIVQLLGSDDLVSFWCRRVKPIVCPTATI 525          
The following BLAST results are available for this feature:
BLAST of NO13G02730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21939.11.800e-12251.73brca1 brca2-containing complex subunit 3 [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02730NO13G02730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02730.1NO13G02730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02730.1.cds1NO13G02730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02730.1.cds2NO13G02730.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02730.1 ID=NO13G02730.1|Name=NO13G02730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1685bp
ACAGCACAATCCAAGGGTTATATCTGAACCACGAGCGAGACGCGCTGCTC
CGTTTGTTTGCTTAGCCTCGTTGGCCCCATTAATAAGAAATTAACCTCCT
CACCCGTCCCTCTACCCTCAAGCCGATGTCCCTTCACCGTGTGCACCTCA
CCCATGAGGCCTTGTTTTGCTGCGTCACTCAAGCCCTGTCGACAGAGCAA
CAAGAGGTCATGTCCGTGCTTCTGGGCACCTGGACCACGCACCCCACCAC
GGGCGAAAACATCGAAGCGGAGGTCCAGCACGTCGTCGTAATGAGCCGCA
CGGACCGGCGGAAAGACAGGGTGGAAGTTGGTTACGAGCAACTCGCGGAA
GCTGAACAGGTTGCCTCCGCCCTCAGCAAAGCCACGGGCCGAGAGACCCG
TATCCTGGGTTGGTTTCACTCTCACCCACATATCACCGTGTTGCCTAGCC
ATGTTGACTTACAAACACAAGCGCAATACCAGGCAATGGATGCTGGGTTT
TTGGGATTGATTTGTGCGGTGTTTCAAGATGATCTCAAGCAGCAGAGAGG
ACGGGTAGAGATTACGGCGTTTCAGTCCGTGCCTGGTGGTCGAGGGAGGG
AGGGAGGGAGGGCCCTAATGATGGATTTGGATAATGGTTTTATTCGTATC
GATGACGAAGATTCGACGTCGTATGTGCATCACAGTATAGGGCTGGAATC
GACAGGGGTGGAGACCGGGACTGTGAGGAAAGGCATTCCGATAGCTTTAG
TGCCTTCAGCAGGAGGAGATGGTGGAAGGGAGGGAGGGAAGGGAGCAGGG
GGCAATGATGGGCCGACCACGGACGCGATGCGTTGCGTGGTGTCTTTGCA
GGAGGTTTTGATGCAAGAGGAACGTTACTTTTACGAAGCTGCTGCTCAAG
CCAACCTACGGAACAATGCCATAAGCACCAGCACCAGCACCAGCACCAGC
ACCAGCATCAGCACCAGCACCAGCAGCTGTAGTAGGGCGGGGGACGTCCA
TGCCTTGTACAATGCCGCTGTCTATGGCAAAGCTCTTTCTTCTCTCTTGG
AAGAGTCGGCGATACCCCTGATTCATACCTTGGAAAGCGTCCTCCTTAAC
GTGCGGCGGGAGAAAGAGCGAGTGAAGCGAGCCGTGGAGAAAATGGAGGA
GCATTCAAGGAGCAGCGTCAGCGTCGCCGCTGGTAGCATGGAAGGAGTGA
TGAGCGTGAAGGAGGGGGGAAGGAAAGGAAGAAGAGGGAATGGGATGATG
GACGTGGATGAGTGTCAACCTTCTGCTTCTCCCTACAGTTCTAGTGTACT
TGCAGTCAGTCGACCCGAGATCCTAAAAAAGGCAGCGGAGGGTTGGCAAA
TGCGAAGAATGGATGGTAATGAGGACTATGATGTGATAGTAAGATTGACA
CGAGAATATGCTCTCTTACCTTTCGGAGGCGAGGGGTTTGGTCAGTGGTG
GCTGTCTGTAGGGGAGGAAAAGGGAAGGCTGACGCGCATTGAGGGGAATA
GGAATGGCAACCACACGGTGACCTTTGGTTTTGTCGTGGCCAGGCCAGGA
GAGCGGGACAGTAGAGGGGAAAAGGAGAAAGAGACAATTGTCCAAGTCTT
GGGATCACAGGACTCGGTGACCTTCTGGTGCCGGCGGGTGCGACCCATTG
TGAGCTCCGATGCCAACCTCCTGCCTCCATCATGA
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protein sequence of NO13G02730.1

>NO13G02730.1-protein ID=NO13G02730.1-protein|Name=NO13G02730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=520bp
MSLHRVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEV
QHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSH
PHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQ
SVPGGRGREGGRALMMDLDNGFIRIDDEDSTSYVHHSIGLESTGVETGTV
RKGIPIALVPSAGGDGGREGGKGAGGNDGPTTDAMRCVVSLQEVLMQEER
YFYEAAAQANLRNNAISTSTSTSTSTSISTSTSSCSRAGDVHALYNAAVY
GKALSSLLEESAIPLIHTLESVLLNVRREKERVKRAVEKMEEHSRSSVSV
AAGSMEGVMSVKEGGRKGRRGNGMMDVDECQPSASPYSSSVLAVSRPEIL
KKAAEGWQMRRMDGNEDYDVIVRLTREYALLPFGGEGFGQWWLSVGEEKG
RLTRIEGNRNGNHTVTFGFVVARPGERDSRGEKEKETIVQVLGSQDSVTF
WCRRVRPIVSSDANLLPPS*
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mRNA from alignment at chr13:749705..751595+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02730.1 ID=NO13G02730.1|Name=NO13G02730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1891bp|location=Sequence derived from alignment at chr13:749705..751595+ (Nannochloropsis oceanica)
ACAGCACAATCCAAGGGTTATATCTGAACCACGAGCGAGACGCGCTGCTC CGTTTGTTTGCTTAGCCTCGTTGGCCCCATTAATAAGAAATTAACCTCCT CACCCGTCCCTCTACCCTCAAGCCGATGTCCCTTCACCGTGTGCACCTCA CCCATGAGGCCTTGTTTTGCTGCGTCACTCAAGCCCTGTCGACAGAGCAA CAAGAGGTCATGTCCGTGCTTCTGGGCACCTGGACCACGCACCCCACCAC GGGCGAAAACATCGAAGCGGAGGTCCAGCACGTCGTCGTAATGAGCCGCA CGGACCGGCGGAAAGACAGGTAAAATCTGCCTGTGCTTCATTCCTCCCTC CCCCCCCTCCATTCTTTTCTTCTTCATCTCCCTGAAGCGCTGAGCCATCG AAGCACAAGTACATAACATAATCGTTCGCGCCATCTGCTGCCCTTCATTT CCTCCCTTCCTCCTTCCCTCCCTCCAAGACTCTCACTCATCCTCCATATC ACCACCACCACTGTACAATGCTCAGGGTGGAAGTTGGTTACGAGCAACTC GCGGAAGCTGAACAGGTTGCCTCCGCCCTCAGCAAAGCCACGGGCCGAGA GACCCGTATCCTGGGTTGGTTTCACTCTCACCCACATATCACCGTGTTGC CTAGCCATGTTGACTTACAAACACAAGCGCAATACCAGGCAATGGATGCT GGGTTTTTGGGATTGATTTGTGCGGTGTTTCAAGATGATCTCAAGCAGCA GAGAGGACGGGTAGAGATTACGGCGTTTCAGTCCGTGCCTGGTGGTCGAG GGAGGGAGGGAGGGAGGGCCCTAATGATGGATTTGGATAATGGTTTTATT CGTATCGATGACGAAGATTCGACGTCGTATGTGCATCACAGTATAGGGCT GGAATCGACAGGGGTGGAGACCGGGACTGTGAGGAAAGGCATTCCGATAG CTTTAGTGCCTTCAGCAGGAGGAGATGGTGGAAGGGAGGGAGGGAAGGGA GCAGGGGGCAATGATGGGCCGACCACGGACGCGATGCGTTGCGTGGTGTC TTTGCAGGAGGTTTTGATGCAAGAGGAACGTTACTTTTACGAAGCTGCTG CTCAAGCCAACCTACGGAACAATGCCATAAGCACCAGCACCAGCACCAGC ACCAGCACCAGCATCAGCACCAGCACCAGCAGCTGTAGTAGGGCGGGGGA CGTCCATGCCTTGTACAATGCCGCTGTCTATGGCAAAGCTCTTTCTTCTC TCTTGGAAGAGTCGGCGATACCCCTGATTCATACCTTGGAAAGCGTCCTC CTTAACGTGCGGCGGGAGAAAGAGCGAGTGAAGCGAGCCGTGGAGAAAAT GGAGGAGCATTCAAGGAGCAGCGTCAGCGTCGCCGCTGGTAGCATGGAAG GAGTGATGAGCGTGAAGGAGGGGGGAAGGAAAGGAAGAAGAGGGAATGGG ATGATGGACGTGGATGAGTGTCAACCTTCTGCTTCTCCCTACAGTTCTAG TGTACTTGCAGTCAGTCGACCCGAGATCCTAAAAAAGGCAGCGGAGGGTT GGCAAATGCGAAGAATGGATGGTAATGAGGACTATGATGTGATAGTAAGA TTGACACGAGAATATGCTCTCTTACCTTTCGGAGGCGAGGGGTTTGGTCA GTGGTGGCTGTCTGTAGGGGAGGAAAAGGGAAGGCTGACGCGCATTGAGG GGAATAGGAATGGCAACCACACGGTGACCTTTGGTTTTGTCGTGGCCAGG CCAGGAGAGCGGGACAGTAGAGGGGAAAAGGAGAAAGAGACAATTGTCCA AGTCTTGGGATCACAGGACTCGGTGACCTTCTGGTGCCGGCGGGTGCGAC CCATTGTGAGCTCCGATGCCAACCTCCTGCCTCCATCATGA
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Coding sequence (CDS) from alignment at chr13:749705..751595+

>NO13G02730.1 ID=NO13G02730.1|Name=NO13G02730.1|organism=Nannochloropsis oceanica|type=CDS|length=1560bp|location=Sequence derived from alignment at chr13:749705..751595+ (Nannochloropsis oceanica)
ATGTCCCTTCACCGTGTGCACCTCACCCATGAGGCCTTGTTTTGCTGCGT
CACTCAAGCCCTGTCGACAGAGCAACAAGAGGTCATGTCCGTGCTTCTGG
GCACCTGGACCACGCACCCCACCACGGGCGAAAACATCGAAGCGGAGGTC
CAGCACGTCGTCGTAATGAGCCGCACGGACCGGCGGAAAGACAGGGTGGA
AGTTGGTTACGAGCAACTCGCGGAAGCTGAACAGGTTGCCTCCGCCCTCA
GCAAAGCCACGGGCCGAGAGACCCGTATCCTGGGTTGGTTTCACTCTCAC
CCACATATCACCGTGTTGCCTAGCCATGTTGACTTACAAACACAAGCGCA
ATACCAGGCAATGGATGCTGGGTTTTTGGGATTGATTTGTGCGGTGTTTC
AAGATGATCTCAAGCAGCAGAGAGGACGGGTAGAGATTACGGCGTTTCAG
TCCGTGCCTGGTGGTCGAGGGAGGGAGGGAGGGAGGGCCCTAATGATGGA
TTTGGATAATGGTTTTATTCGTATCGATGACGAAGATTCGACGTCGTATG
TGCATCACAGTATAGGGCTGGAATCGACAGGGGTGGAGACCGGGACTGTG
AGGAAAGGCATTCCGATAGCTTTAGTGCCTTCAGCAGGAGGAGATGGTGG
AAGGGAGGGAGGGAAGGGAGCAGGGGGCAATGATGGGCCGACCACGGACG
CGATGCGTTGCGTGGTGTCTTTGCAGGAGGTTTTGATGCAAGAGGAACGT
TACTTTTACGAAGCTGCTGCTCAAGCCAACCTACGGAACAATGCCATAAG
CACCAGCACCAGCACCAGCACCAGCACCAGCATCAGCACCAGCACCAGCA
GCTGTAGTAGGGCGGGGGACGTCCATGCCTTGTACAATGCCGCTGTCTAT
GGCAAAGCTCTTTCTTCTCTCTTGGAAGAGTCGGCGATACCCCTGATTCA
TACCTTGGAAAGCGTCCTCCTTAACGTGCGGCGGGAGAAAGAGCGAGTGA
AGCGAGCCGTGGAGAAAATGGAGGAGCATTCAAGGAGCAGCGTCAGCGTC
GCCGCTGGTAGCATGGAAGGAGTGATGAGCGTGAAGGAGGGGGGAAGGAA
AGGAAGAAGAGGGAATGGGATGATGGACGTGGATGAGTGTCAACCTTCTG
CTTCTCCCTACAGTTCTAGTGTACTTGCAGTCAGTCGACCCGAGATCCTA
AAAAAGGCAGCGGAGGGTTGGCAAATGCGAAGAATGGATGGTAATGAGGA
CTATGATGTGATAGTAAGATTGACACGAGAATATGCTCTCTTACCTTTCG
GAGGCGAGGGGTTTGGTCAGTGGTGGCTGTCTGTAGGGGAGGAAAAGGGA
AGGCTGACGCGCATTGAGGGGAATAGGAATGGCAACCACACGGTGACCTT
TGGTTTTGTCGTGGCCAGGCCAGGAGAGCGGGACAGTAGAGGGGAAAAGG
AGAAAGAGACAATTGTCCAAGTCTTGGGATCACAGGACTCGGTGACCTTC
TGGTGCCGGCGGGTGCGACCCATTGTGAGCTCCGATGCCAACCTCCTGCC
TCCATCATGA
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Synonyms
Publications