NO13G02530, NO13G02530 (gene) Nannochloropsis oceanica

Overview
NameNO13G02530
Unique NameNO13G02530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2427
Alignment locationchr13:704458..706884 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:704458..706884 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
IPR016197Chromodomain-like
IPR001810F-box_dom
IPR025995Tudor-knot
Homology
BLAST of NO13G02530 vs. NCBI_GenBank
Match: EWM21927.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 656.4 bits (1692), Expect = 6.600e-185
Identity = 335/451 (74.28%), Postives = 372/451 (82.48%), Query Frame = 0
Query:    1 MERIAALSLTIPPPEICTKTPDGSPRALGIPKKIPERRIVSSLPGSSSPVPSSPASWKGSSQSSVALGPTAAGTPTSRTMLHRFHTSSPRALGLRSPLSGMRSGLGAGWTRAIVDLYQTEDPDEMMRILMEIQALLRVQKMGNGRHAGGNKEQQHAKFCKKDLEAALNEKKKKMPLLFTPGIRRFSLELLAEFFDKDHLNKLPSALLVYTTSFLSTSQLGVAASVCQQWKEVVGSDAVWKPLYVKRFNFLSAPGTKAAVTAATAAPATGGGSSRLLPFQQQFRKRLLDPSVGDSVEVAWKGKFRLESLDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVPRDRLRWTIEQDLNKKIGPNDDVEIWCCGSNVPGAWLEAKVRRVKGQKYCVGRVLSSGALWVERERVRMSPKGAARSLGKQGAASFFSRDAAAAAAAVGASCSIM 452
            ME+IAALSLTIPP    + T +GSP   G+PK  PERR +S  P  S P PSSPASWKG SQSSV LGPT AGTP  R ML+RF+TSSPRALGLRSP+SGMRSGLGAGWTRAIVDLY  +DP++M+R L EIQ+LLR QK+G    AG  KEQQ +KFCKKDLEAALNEKKKK P LF P +RR SLE++AEFFDKD +NKLPSA+L+YT SF+S S+LG+AASVCQQWKE V S AVWKPLY+KRF+FL +P   +             G    L +Q  FR RLLDP VGD VEVAWKGKFRLES+DIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWV RDRLRWT+EQDLNK+I PNDDVEIWCCGSNVPGAWLEAKVR+VKGQ YCVGRVLSSGALWV RERVR+SPKG ARSLGKQGA++FFSRDAAAAAAAVGASCS+M
Sbjct:    1 MEQIAALSLTIPPQRAYSSTSEGSPCVSGLPKTFPERRFLSGSP-RSIPGPSSPASWKG-SQSSVPLGPTGAGTPNGRIMLNRFNTSSPRALGLRSPMSGMRSGLGAGWTRAIVDLYNAQDPEQMIRCLQEIQSLLRTQKLGK---AGVAKEQQQSKFCKKDLEAALNEKKKKNPNLFIPDVRRLSLEVMAEFFDKDRVNKLPSAVLIYTASFMSISELGMAASVCQQWKETVQSVAVWKPLYIKRFHFLHSPDDAST------------GIGLPLSYQALFRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRWTVEQDLNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSGALWVNRERVRISPKGGARSLGKQGASNFFSRDAAAAAAAVGASCSVM 434          
BLAST of NO13G02530 vs. NCBI_GenBank
Match: CBJ32449.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 186.4 bits (472), Expect = 1.900e-43
Identity = 96/221 (43.44%), Postives = 127/221 (57.47%), Query Frame = 0
Query:  225 VCQQWKEVVGSDAVWKPLYVKRFNFLSAPGTKAA------------------VTAATAAPATGGGSS----RLLPFQQQFRKRLLDPSVGDSVEVAWKGKFRLESLDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVPRDRLRWTIEQDLNKKIG----PNDDVEIWCCGSNVPGAWLEAKVRRVKGQKYCVGRVLSSGALWVERERVRMSPKG 420
            V Q ++E    D +W+  Y +RF  L +  +++A                     AT   A+G  SS    +   F+ ++++RLLDP VGD V+VAWKGKFRLESL++Y G AWW A VV+KGE    YK+HYPGW+ +WDEWV RDRLRW  E       G      D VE+WC G +VPGAWLEA V  V+ ++  +G VL+SG  W   E VR+  KG
Sbjct:   71 VLQDFREAAEGDGLWREAYDERFPVLQSETSESAGQGGPDAGGGGCGPVDCREATATKPTASGRNSSTGDEKGDGFKGRYKRRLLDPHVGDEVQVAWKGKFRLESLEVYDGTAWWLARVVDKGEKPGYYKVHYPGWEPKWDEWVVRDRLRWGNEHLAAPLKGIPLQAGDAVEVWCKGLHVPGAWLEAVVYEVEKERVYLGEVLTSGHFWARTEHVRLIQKG 291          
BLAST of NO13G02530 vs. NCBI_GenBank
Match: CBN75917.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 181.4 bits (459), Expect = 6.200e-42
Identity = 93/223 (41.70%), Postives = 128/223 (57.40%), Query Frame = 0
Query:  202 LPSALLVYTTSFLSTSQLGVAASVCQQWKEVVGSDAVWKPLYVKRFNFLSAPGTKAAVTAATAAPATGGGSSRLLPFQQQFRKRLLDPSVGDSVEVAWKGKFRLESLDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVPRDRLRWTIEQD-LNKKIGPNDDVEIWCCGSNVPGAWLEAKVRRVKGQKYCVGRVLSSG--ALWVERERVRMSPKGAA 422
            LP  LL  +   L+   LG    V + W+     DAVW+  + +RF                  P    G +R    +Q  R RL DP VGD VEV+W+G+FRLESLD++ G +WW A VV+K  +G +YKIHYPGWDS WDEWV RDRLRW ++   L+      + VE+WC G++V GAWL+A+VR++K  +  +  VL+S    +WV R +VR    GA+
Sbjct:   29 LPRELLARSMELLNMVDLGQVCCVNKDWRNAAEEDAVWRFWWARRFR---------------EDPPPQRGRARAGHLKQLHRYRLEDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQK-MDGFKYKIHYPGWDSNWDEWVVRDRLRWPVDPSYLSTTFRVREVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTVWVPRSKVRRVCTGAS 235          
BLAST of NO13G02530 vs. NCBI_GenBank
Match: CBJ33111.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 120.6 bits (301), Expect = 1.300e-23
Identity = 72/213 (33.80%), Postives = 99/213 (46.48%), Query Frame = 0
Query:  224 SVCQQWKEVVGSDAVWKPLYVKRF-------NFLSAPGTKAAVTAATAAPATGGGSSRLLPFQQQFRKRLLDPSVGDSVEVAWKGKFRLESLDIYQGLAWWSAVVV---------------EKGENG---------------ARYKIHYPGWDSRWDEWVPRDRLRWTIEQ------DLNKKIGP----NDDVEIWCCGSNVPGAWLEAKVRR 390
            +V ++W  + GSD +W PLY +RF             G     TAA +   +G     ++ F   FR RL  P VGD VEVAWKGKFRL+   ++ GL+WW A VV               E GE+G                R+ +HY  W  RWDEW+   R+RW  +         +   GP    + + E+WC G +  GAWLEA+V +
Sbjct:    2 AVSRRWHRIGGSDFMWLPLYSRRFGPAASLPELFERVGLDPGDTAAASKRRSG-----MVRF--AFRSRLACPVVGDHVEVAWKGKFRLDDCMVFVGLSWWDAKVVAVELGESLPCTTPDDEDGEDGRVDRRGATCMGERRPKRFLVHYRSWSRRWDEWLEPSRVRWARKMPTEACGQTSASAGPELEVDQEAELWCHGGSGGGAWLEARVHK 207          
The following BLAST results are available for this feature:
BLAST of NO13G02530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM21927.16.600e-18574.28conserved unknown protein [Nannochloropsis gaditan... [more]
CBJ32449.11.900e-4343.44conserved unknown protein [Ectocarpus siliculosus][more]
CBN75917.16.200e-4241.70conserved unknown protein [Ectocarpus siliculosus][more]
CBJ33111.11.300e-2333.80expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001641NSK001641Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02530.1NO13G02530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596233gene_6758Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100070g16gene8521Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02530.1NO13G02530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02530 ID=NO13G02530|Name=NO13G02530|organism=Nannochloropsis oceanica|type=gene|length=2427bp
CACGATACGAAATTTAACGTCACGCGCATGCGCCATCTTCAAGTGCATAT
GTCTCCGGTTTTGGTGGTGCCGGCTTTCCCGGCTTTCCCCGCATGCCGAG
CCTTCCACACGATAAACACGGCAGCGGGATGTGCCACAACAACAAAACTA
AGTTGGATACCGTGCTCGTCTTCCGTACTTTTTGTTGCGAAAAGAACCTT
CATACACATTCACAAAATCTCTCGTAGACTTGCTTGCTCTCGCTATGCTG
CTTCCCTTCCGGTCCCCACCTTTTTGCGAGTCTTCCTCGCTTCTTGCGCG
TATTTATCTATCACAAACACACGCATGCTTTATTTTTGTCACTACATAGC
ACGCGATGAAGGCCGTCTGGAGGACGAGGACTGCTTGGGGAGCCCCGAAA
GCCCAGACCACTCACACTGTCGTTCTATCACACATAAAACACCCAGGGAC
GTCCCTTGCACGGTTTCAACCCGCCTAGCTCGCTAGGCTACTTCCCTCGT
GTCTCCAGCGCATCTGCACCAATCACTTCACTTCACAGCATTACTTCACC
AAGAGGGGGAAATGGAGCGGATAGCGGCCCTGTCCCTGACGATCCCGCCC
CCGGAGATCTGCACAAAAACGCCCGACGGCAGCCCTCGTGCCTTGGGTAT
CCCCAAAAAAATTCCGGAGCGCCGTATCGTCTCATCTTTGCCCGGCTCCT
CAAGTCCTGTACCTAGCAGTCCAGCGTCATGGAAAGGCTCCAGTCAAAGC
AGCGTTGCCTTGGGACCCACCGCGGCCGGGACACCCACTAGTCGTACCAT
GCTTCACCGTTTCCACACCTCGTCCCCGCGAGCCTTGGGCCTTCGTTCAC
CCTTGTCAGGTATGCGTTCAGGTCTGGGTGCAGGTTGGACGCGGGCCATT
GTTGATTTGTACCAGACCGAAGACCCGGACGAAATGATGCGGATCTTAAT
GGAAATCCAAGCGCTGCTGCGCGTGCAAAAAATGGGCAATGGACGACACG
CTGGGGGAAACAAGGAGCAGCAGCATGCCAAGTTTTGTAAAAAGGACCTG
GAGGCAGCATTAAATGAGAAGAAGAAGAAGATGCCCTTGCTGTTTACGCC
CGGCATCCGCCGCTTTAGCCTCGAGTTGCTCGCTGAGTTTTTTGACAAGG
ACCACCTAAACAAGCTGCCTTCGGCCCTGCTTGTCTACACCACCTCTTTC
CTCAGCACGTCTCAGCTGGGCGTCGCCGCCAGCGTCTGCCAGCAGTGGAA
AGAAGTCGTAGGGAGCGATGCGGTCTGGAAGCCTTTGTATGTCAAACGTT
TTAACTTTTTGAGTGCACCTGGCACCAAGGCTGCTGTTACTGCTGCTACT
GCTGCTCCTGCTACTGGTGGTGGTAGCAGTCGGCTTTTGCCTTTTCAGCA
GCAGTTTCGCAAGCGGCTCCTCGATCCGTCTGTAGGAGATTCGGTAGAGG
TGGCTTGGAAGGGAAAGTTTCGGTTGGAGTCATTGGATATTTATCAGGGC
TTGGCGTGGTGGTCGGCGGTGGTGGTGGAGAAGGGGGAAAATGGCGCACG
GTACAAGATTCATTACCCCGGTTGGGACAGTCGGTGGGATGAATGGGTGC
CTCGTGATAGACTGCGATGGACGATCGAGCAGGACTTGAACAAGAAGATT
GGGCCCAATGACGACGTAGAGATTTGGTGCTGTGGAAGCAATGTGCCTGG
TGCGTGGCTCGAGGCCAAGGTTCGGAGGGTCAAGGGCCAGAAATACTGTG
TAGGGCGTGTCTTATCCTCTGGCGCCTTGTGGGTAGAACGAGAGCGTGTG
CGGATGTCGCCTAAGGGTGCTGCTCGTTCTCTGGGAAAACAAGGCGCGGC
AAGTTTTTTTTCGAGGGATGCGGCGGCGGCTGCGGCGGCGGTGGGTGCGA
GCTGCTCTATCATGTAAGGGAGGAAACGGAGGAAGAAAGGAAGGGAGGGC
TTGCTTATATTTTGGATAATAACGACAGATAAGACGGCAATGAGAAAGAG
GGTGGCAGTCCTTCTCAGTGGATGAGAAATTTGTGTCTTCTCCTCTCTTC
ATTTTTCCAGAAAGCTTCAAAAGGGAAAATCAAAGGGTCTAGACGGCCTC
AGGTAGCTCTGGCAGCGGTGATGACGACTGAAGTCTTGTGATGAAGCGGC
CAACGCCGTCGAGTTAAACGACAAAGAAAGTAAGTAGAAGAAAAAGAGTT
CAAAGAAAGTGAGTGAGCGAGTGAGTGCGTGAGTGACTGAACAAAGGAAA
TGAGAAAAATGAAGAGAGGTGCATATGTCTGTGTATGTGTAAATTGACCA
AGAGAAAATGTTGTAAGAAACAATTTTTTGCCTTGTGGACGGCCGTTTGA
AAGGAAAAAGGAAGGAGGAGAGAACAAATAAGAAATAGTGGGCGATGGGG
CGAAAATTGAGGTGGGAATAAGTCGGT
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protein sequence of NO13G02530.1

>NO13G02530.1-protein ID=NO13G02530.1-protein|Name=NO13G02530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MERIAALSLTIPPPEICTKTPDGSPRALGIPKKIPERRIVSSLPGSSSPV
PSSPASWKGSSQSSVALGPTAAGTPTSRTMLHRFHTSSPRALGLRSPLSG
MRSGLGAGWTRAIVDLYQTEDPDEMMRILMEIQALLRVQKMGNGRHAGGN
KEQQHAKFCKKDLEAALNEKKKKMPLLFTPGIRRFSLELLAEFFDKDHLN
KLPSALLVYTTSFLSTSQLGVAASVCQQWKEVVGSDAVWKPLYVKRFNFL
SAPGTKAAVTAATAAPATGGGSSRLLPFQQQFRKRLLDPSVGDSVEVAWK
GKFRLESLDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVPRDR
LRWTIEQDLNKKIGPNDDVEIWCCGSNVPGAWLEAKVRRVKGQKYCVGRV
LSSGALWVERERVRMSPKGAARSLGKQGAASFFSRDAAAAAAAVGASCSI
M*
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Synonyms
Publications