NO13G02530.1, NO13G02530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02530.1
Unique NameNO13G02530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2427
Alignment locationchr13:704458..706884 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:704458..706884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G02530.1 vs.
Match: EWM21927.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 656.4 bits (1692), Expect = 6.600e-185
Identity = 335/451 (74.28%), Postives = 372/451 (82.48%), Query Frame = 0
Query:    1 MERIAALSLTIPPPEICTKTPDGSPRALGIPKKIPERRIVSSLPGSSSPVPSSPASWKGSSQSSVALGPTAAGTPTSRTMLHRFHTSSPRALGLRSPLSGMRSGLGAGWTRAIVDLYQTEDPDEMMRILMEIQALLRVQKMGNGRHAGGNKEQQHAKFCKKDLEAALNEKKKKMPLLFTPGIRRFSLELLAEFFDKDHLNKLPSALLVYTTSFLSTSQLGVAASVCQQWKEVVGSDAVWKPLYVKRFNFLSAPGTKAAVTAATAAPATGGGSSRLLPFQQQFRKRLLDPSVGDSVEVAWKGKFRLESLDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVPRDRLRWTIEQDLNKKIGPNDDVEIWCCGSNVPGAWLEAKVRRVKGQKYCVGRVLSSGALWVERERVRMSPKGAARSLGKQGAASFFSRDAAAAAAAVGASCSIM 452
            ME+IAALSLTIPP    + T +GSP   G+PK  PERR +S  P  S P PSSPASWKGS QSSV LGPT AGTP  R ML+RF+TSSPRALGLRSP+SGMRSGLGAGWTRAIVDLY  +DP++M+R L EIQ+LLR QK+G    AG  KEQQ +KFCKKDLEAALNEKKKK P LF P +RR SLE++AEFFDKD +NKLPSA+L+YT SF+S S+LG+AASVCQQWKE V S AVWKPLY+KRF+FL +P   +             G    L +Q  FR RLLDP VGD VEVAWKGKFRLES+DIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWV RDRLRWT+EQDLNK+I PNDDVEIWCCGSNVPGAWLEAKVR+VKGQ YCVGRVLSSGALWV RERVR+SPKG ARSLGKQGA++FFSRDAAAAAAAVGASCS+M
Sbjct:    1 MEQIAALSLTIPPQRAYSSTSEGSPCVSGLPKTFPERRFLSGSP-RSIPGPSSPASWKGS-QSSVPLGPTGAGTPNGRIMLNRFNTSSPRALGLRSPMSGMRSGLGAGWTRAIVDLYNAQDPEQMIRCLQEIQSLLRTQKLGK---AGVAKEQQQSKFCKKDLEAALNEKKKKNPNLFIPDVRRLSLEVMAEFFDKDRVNKLPSAVLIYTASFMSISELGMAASVCQQWKETVQSVAVWKPLYIKRFHFLHSPDDAST------------GIGLPLSYQALFRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRWTVEQDLNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSGALWVNRERVRISPKGGARSLGKQGASNFFSRDAAAAAAAVGASCSVM 434          
The following BLAST results are available for this feature:
BLAST of NO13G02530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21927.16.600e-18574.28conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02530NO13G02530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02530.1NO13G02530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02530.1.cds1NO13G02530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02530.1 ID=NO13G02530.1|Name=NO13G02530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2427bp
CACGATACGAAATTTAACGTCACGCGCATGCGCCATCTTCAAGTGCATAT
GTCTCCGGTTTTGGTGGTGCCGGCTTTCCCGGCTTTCCCCGCATGCCGAG
CCTTCCACACGATAAACACGGCAGCGGGATGTGCCACAACAACAAAACTA
AGTTGGATACCGTGCTCGTCTTCCGTACTTTTTGTTGCGAAAAGAACCTT
CATACACATTCACAAAATCTCTCGTAGACTTGCTTGCTCTCGCTATGCTG
CTTCCCTTCCGGTCCCCACCTTTTTGCGAGTCTTCCTCGCTTCTTGCGCG
TATTTATCTATCACAAACACACGCATGCTTTATTTTTGTCACTACATAGC
ACGCGATGAAGGCCGTCTGGAGGACGAGGACTGCTTGGGGAGCCCCGAAA
GCCCAGACCACTCACACTGTCGTTCTATCACACATAAAACACCCAGGGAC
GTCCCTTGCACGGTTTCAACCCGCCTAGCTCGCTAGGCTACTTCCCTCGT
GTCTCCAGCGCATCTGCACCAATCACTTCACTTCACAGCATTACTTCACC
AAGAGGGGGAAATGGAGCGGATAGCGGCCCTGTCCCTGACGATCCCGCCC
CCGGAGATCTGCACAAAAACGCCCGACGGCAGCCCTCGTGCCTTGGGTAT
CCCCAAAAAAATTCCGGAGCGCCGTATCGTCTCATCTTTGCCCGGCTCCT
CAAGTCCTGTACCTAGCAGTCCAGCGTCATGGAAAGGCTCCAGTCAAAGC
AGCGTTGCCTTGGGACCCACCGCGGCCGGGACACCCACTAGTCGTACCAT
GCTTCACCGTTTCCACACCTCGTCCCCGCGAGCCTTGGGCCTTCGTTCAC
CCTTGTCAGGTATGCGTTCAGGTCTGGGTGCAGGTTGGACGCGGGCCATT
GTTGATTTGTACCAGACCGAAGACCCGGACGAAATGATGCGGATCTTAAT
GGAAATCCAAGCGCTGCTGCGCGTGCAAAAAATGGGCAATGGACGACACG
CTGGGGGAAACAAGGAGCAGCAGCATGCCAAGTTTTGTAAAAAGGACCTG
GAGGCAGCATTAAATGAGAAGAAGAAGAAGATGCCCTTGCTGTTTACGCC
CGGCATCCGCCGCTTTAGCCTCGAGTTGCTCGCTGAGTTTTTTGACAAGG
ACCACCTAAACAAGCTGCCTTCGGCCCTGCTTGTCTACACCACCTCTTTC
CTCAGCACGTCTCAGCTGGGCGTCGCCGCCAGCGTCTGCCAGCAGTGGAA
AGAAGTCGTAGGGAGCGATGCGGTCTGGAAGCCTTTGTATGTCAAACGTT
TTAACTTTTTGAGTGCACCTGGCACCAAGGCTGCTGTTACTGCTGCTACT
GCTGCTCCTGCTACTGGTGGTGGTAGCAGTCGGCTTTTGCCTTTTCAGCA
GCAGTTTCGCAAGCGGCTCCTCGATCCGTCTGTAGGAGATTCGGTAGAGG
TGGCTTGGAAGGGAAAGTTTCGGTTGGAGTCATTGGATATTTATCAGGGC
TTGGCGTGGTGGTCGGCGGTGGTGGTGGAGAAGGGGGAAAATGGCGCACG
GTACAAGATTCATTACCCCGGTTGGGACAGTCGGTGGGATGAATGGGTGC
CTCGTGATAGACTGCGATGGACGATCGAGCAGGACTTGAACAAGAAGATT
GGGCCCAATGACGACGTAGAGATTTGGTGCTGTGGAAGCAATGTGCCTGG
TGCGTGGCTCGAGGCCAAGGTTCGGAGGGTCAAGGGCCAGAAATACTGTG
TAGGGCGTGTCTTATCCTCTGGCGCCTTGTGGGTAGAACGAGAGCGTGTG
CGGATGTCGCCTAAGGGTGCTGCTCGTTCTCTGGGAAAACAAGGCGCGGC
AAGTTTTTTTTCGAGGGATGCGGCGGCGGCTGCGGCGGCGGTGGGTGCGA
GCTGCTCTATCATGTAAGGGAGGAAACGGAGGAAGAAAGGAAGGGAGGGC
TTGCTTATATTTTGGATAATAACGACAGATAAGACGGCAATGAGAAAGAG
GGTGGCAGTCCTTCTCAGTGGATGAGAAATTTGTGTCTTCTCCTCTCTTC
ATTTTTCCAGAAAGCTTCAAAAGGGAAAATCAAAGGGTCTAGACGGCCTC
AGGTAGCTCTGGCAGCGGTGATGACGACTGAAGTCTTGTGATGAAGCGGC
CAACGCCGTCGAGTTAAACGACAAAGAAAGTAAGTAGAAGAAAAAGAGTT
CAAAGAAAGTGAGTGAGCGAGTGAGTGCGTGAGTGACTGAACAAAGGAAA
TGAGAAAAATGAAGAGAGGTGCATATGTCTGTGTATGTGTAAATTGACCA
AGAGAAAATGTTGTAAGAAACAATTTTTTGCCTTGTGGACGGCCGTTTGA
AAGGAAAAAGGAAGGAGGAGAGAACAAATAAGAAATAGTGGGCGATGGGG
CGAAAATTGAGGTGGGAATAAGTCGGT
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protein sequence of NO13G02530.1

>NO13G02530.1-protein ID=NO13G02530.1-protein|Name=NO13G02530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MERIAALSLTIPPPEICTKTPDGSPRALGIPKKIPERRIVSSLPGSSSPV
PSSPASWKGSSQSSVALGPTAAGTPTSRTMLHRFHTSSPRALGLRSPLSG
MRSGLGAGWTRAIVDLYQTEDPDEMMRILMEIQALLRVQKMGNGRHAGGN
KEQQHAKFCKKDLEAALNEKKKKMPLLFTPGIRRFSLELLAEFFDKDHLN
KLPSALLVYTTSFLSTSQLGVAASVCQQWKEVVGSDAVWKPLYVKRFNFL
SAPGTKAAVTAATAAPATGGGSSRLLPFQQQFRKRLLDPSVGDSVEVAWK
GKFRLESLDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVPRDR
LRWTIEQDLNKKIGPNDDVEIWCCGSNVPGAWLEAKVRRVKGQKYCVGRV
LSSGALWVERERVRMSPKGAARSLGKQGAASFFSRDAAAAAAAVGASCSI
M*
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mRNA from alignment at chr13:704458..706884+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02530.1 ID=NO13G02530.1|Name=NO13G02530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2427bp|location=Sequence derived from alignment at chr13:704458..706884+ (Nannochloropsis oceanica)
CACGATACGAAATTTAACGTCACGCGCATGCGCCATCTTCAAGTGCATAT GTCTCCGGTTTTGGTGGTGCCGGCTTTCCCGGCTTTCCCCGCATGCCGAG CCTTCCACACGATAAACACGGCAGCGGGATGTGCCACAACAACAAAACTA AGTTGGATACCGTGCTCGTCTTCCGTACTTTTTGTTGCGAAAAGAACCTT CATACACATTCACAAAATCTCTCGTAGACTTGCTTGCTCTCGCTATGCTG CTTCCCTTCCGGTCCCCACCTTTTTGCGAGTCTTCCTCGCTTCTTGCGCG TATTTATCTATCACAAACACACGCATGCTTTATTTTTGTCACTACATAGC ACGCGATGAAGGCCGTCTGGAGGACGAGGACTGCTTGGGGAGCCCCGAAA GCCCAGACCACTCACACTGTCGTTCTATCACACATAAAACACCCAGGGAC GTCCCTTGCACGGTTTCAACCCGCCTAGCTCGCTAGGCTACTTCCCTCGT GTCTCCAGCGCATCTGCACCAATCACTTCACTTCACAGCATTACTTCACC AAGAGGGGGAAATGGAGCGGATAGCGGCCCTGTCCCTGACGATCCCGCCC CCGGAGATCTGCACAAAAACGCCCGACGGCAGCCCTCGTGCCTTGGGTAT CCCCAAAAAAATTCCGGAGCGCCGTATCGTCTCATCTTTGCCCGGCTCCT CAAGTCCTGTACCTAGCAGTCCAGCGTCATGGAAAGGCTCCAGTCAAAGC AGCGTTGCCTTGGGACCCACCGCGGCCGGGACACCCACTAGTCGTACCAT GCTTCACCGTTTCCACACCTCGTCCCCGCGAGCCTTGGGCCTTCGTTCAC CCTTGTCAGGTATGCGTTCAGGTCTGGGTGCAGGTTGGACGCGGGCCATT GTTGATTTGTACCAGACCGAAGACCCGGACGAAATGATGCGGATCTTAAT GGAAATCCAAGCGCTGCTGCGCGTGCAAAAAATGGGCAATGGACGACACG CTGGGGGAAACAAGGAGCAGCAGCATGCCAAGTTTTGTAAAAAGGACCTG GAGGCAGCATTAAATGAGAAGAAGAAGAAGATGCCCTTGCTGTTTACGCC CGGCATCCGCCGCTTTAGCCTCGAGTTGCTCGCTGAGTTTTTTGACAAGG ACCACCTAAACAAGCTGCCTTCGGCCCTGCTTGTCTACACCACCTCTTTC CTCAGCACGTCTCAGCTGGGCGTCGCCGCCAGCGTCTGCCAGCAGTGGAA AGAAGTCGTAGGGAGCGATGCGGTCTGGAAGCCTTTGTATGTCAAACGTT TTAACTTTTTGAGTGCACCTGGCACCAAGGCTGCTGTTACTGCTGCTACT GCTGCTCCTGCTACTGGTGGTGGTAGCAGTCGGCTTTTGCCTTTTCAGCA GCAGTTTCGCAAGCGGCTCCTCGATCCGTCTGTAGGAGATTCGGTAGAGG TGGCTTGGAAGGGAAAGTTTCGGTTGGAGTCATTGGATATTTATCAGGGC TTGGCGTGGTGGTCGGCGGTGGTGGTGGAGAAGGGGGAAAATGGCGCACG GTACAAGATTCATTACCCCGGTTGGGACAGTCGGTGGGATGAATGGGTGC CTCGTGATAGACTGCGATGGACGATCGAGCAGGACTTGAACAAGAAGATT GGGCCCAATGACGACGTAGAGATTTGGTGCTGTGGAAGCAATGTGCCTGG TGCGTGGCTCGAGGCCAAGGTTCGGAGGGTCAAGGGCCAGAAATACTGTG TAGGGCGTGTCTTATCCTCTGGCGCCTTGTGGGTAGAACGAGAGCGTGTG CGGATGTCGCCTAAGGGTGCTGCTCGTTCTCTGGGAAAACAAGGCGCGGC AAGTTTTTTTTCGAGGGATGCGGCGGCGGCTGCGGCGGCGGTGGGTGCGA GCTGCTCTATCATGTAAGGGAGGAAACGGAGGAAGAAAGGAAGGGAGGGC TTGCTTATATTTTGGATAATAACGACAGATAAGACGGCAATGAGAAAGAG GGTGGCAGTCCTTCTCAGTGGATGAGAAATTTGTGTCTTCTCCTCTCTTC ATTTTTCCAGAAAGCTTCAAAAGGGAAAATCAAAGGGTCTAGACGGCCTC AGGTAGCTCTGGCAGCGGTGATGACGACTGAAGTCTTGTGATGAAGCGGC CAACGCCGTCGAGTTAAACGACAAAGAAAGTAAGTAGAAGAAAAAGAGTT CAAAGAAAGTGAGTGAGCGAGTGAGTGCGTGAGTGACTGAACAAAGGAAA TGAGAAAAATGAAGAGAGGTGCATATGTCTGTGTATGTGTAAATTGACCA AGAGAAAATGTTGTAAGAAACAATTTTTTGCCTTGTGGACGGCCGTTTGA AAGGAAAAAGGAAGGAGGAGAGAACAAATAAGAAATAGTGGGCGATGGGG CGAAAATTGAGGTGGGAATAAGTCGGT
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Coding sequence (CDS) from alignment at chr13:704458..706884+

>NO13G02530.1 ID=NO13G02530.1|Name=NO13G02530.1|organism=Nannochloropsis oceanica|type=CDS|length=1356bp|location=Sequence derived from alignment at chr13:704458..706884+ (Nannochloropsis oceanica)
ATGGAGCGGATAGCGGCCCTGTCCCTGACGATCCCGCCCCCGGAGATCTG
CACAAAAACGCCCGACGGCAGCCCTCGTGCCTTGGGTATCCCCAAAAAAA
TTCCGGAGCGCCGTATCGTCTCATCTTTGCCCGGCTCCTCAAGTCCTGTA
CCTAGCAGTCCAGCGTCATGGAAAGGCTCCAGTCAAAGCAGCGTTGCCTT
GGGACCCACCGCGGCCGGGACACCCACTAGTCGTACCATGCTTCACCGTT
TCCACACCTCGTCCCCGCGAGCCTTGGGCCTTCGTTCACCCTTGTCAGGT
ATGCGTTCAGGTCTGGGTGCAGGTTGGACGCGGGCCATTGTTGATTTGTA
CCAGACCGAAGACCCGGACGAAATGATGCGGATCTTAATGGAAATCCAAG
CGCTGCTGCGCGTGCAAAAAATGGGCAATGGACGACACGCTGGGGGAAAC
AAGGAGCAGCAGCATGCCAAGTTTTGTAAAAAGGACCTGGAGGCAGCATT
AAATGAGAAGAAGAAGAAGATGCCCTTGCTGTTTACGCCCGGCATCCGCC
GCTTTAGCCTCGAGTTGCTCGCTGAGTTTTTTGACAAGGACCACCTAAAC
AAGCTGCCTTCGGCCCTGCTTGTCTACACCACCTCTTTCCTCAGCACGTC
TCAGCTGGGCGTCGCCGCCAGCGTCTGCCAGCAGTGGAAAGAAGTCGTAG
GGAGCGATGCGGTCTGGAAGCCTTTGTATGTCAAACGTTTTAACTTTTTG
AGTGCACCTGGCACCAAGGCTGCTGTTACTGCTGCTACTGCTGCTCCTGC
TACTGGTGGTGGTAGCAGTCGGCTTTTGCCTTTTCAGCAGCAGTTTCGCA
AGCGGCTCCTCGATCCGTCTGTAGGAGATTCGGTAGAGGTGGCTTGGAAG
GGAAAGTTTCGGTTGGAGTCATTGGATATTTATCAGGGCTTGGCGTGGTG
GTCGGCGGTGGTGGTGGAGAAGGGGGAAAATGGCGCACGGTACAAGATTC
ATTACCCCGGTTGGGACAGTCGGTGGGATGAATGGGTGCCTCGTGATAGA
CTGCGATGGACGATCGAGCAGGACTTGAACAAGAAGATTGGGCCCAATGA
CGACGTAGAGATTTGGTGCTGTGGAAGCAATGTGCCTGGTGCGTGGCTCG
AGGCCAAGGTTCGGAGGGTCAAGGGCCAGAAATACTGTGTAGGGCGTGTC
TTATCCTCTGGCGCCTTGTGGGTAGAACGAGAGCGTGTGCGGATGTCGCC
TAAGGGTGCTGCTCGTTCTCTGGGAAAACAAGGCGCGGCAAGTTTTTTTT
CGAGGGATGCGGCGGCGGCTGCGGCGGCGGTGGGTGCGAGCTGCTCTATC
ATGTAA
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Synonyms
Publications