|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:704458..706884 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G02530.1 vs.
Match: EWM21927.1 (conserved unknown protein [Nannochloropsis gaditana]) HSP 1 Score: 656.4 bits (1692), Expect = 6.600e-185 Identity = 335/451 (74.28%), Postives = 372/451 (82.48%), Query Frame = 0
Query: 1 MERIAALSLTIPPPEICTKTPDGSPRALGIPKKIPERRIVSSLPGSSSPVPSSPASWKGSSQSSVALGPTAAGTPTSRTMLHRFHTSSPRALGLRSPLSGMRSGLGAGWTRAIVDLYQTEDPDEMMRILMEIQALLRVQKMGNGRHAGGNKEQQHAKFCKKDLEAALNEKKKKMPLLFTPGIRRFSLELLAEFFDKDHLNKLPSALLVYTTSFLSTSQLGVAASVCQQWKEVVGSDAVWKPLYVKRFNFLSAPGTKAAVTAATAAPATGGGSSRLLPFQQQFRKRLLDPSVGDSVEVAWKGKFRLESLDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVPRDRLRWTIEQDLNKKIGPNDDVEIWCCGSNVPGAWLEAKVRRVKGQKYCVGRVLSSGALWVERERVRMSPKGAARSLGKQGAASFFSRDAAAAAAAVGASCSIM 452
ME+IAALSLTIPP + T +GSP G+PK PERR +S P S P PSSPASWKGS QSSV LGPT AGTP R ML+RF+TSSPRALGLRSP+SGMRSGLGAGWTRAIVDLY +DP++M+R L EIQ+LLR QK+G AG KEQQ +KFCKKDLEAALNEKKKK P LF P +RR SLE++AEFFDKD +NKLPSA+L+YT SF+S S+LG+AASVCQQWKE V S AVWKPLY+KRF+FL +P + G L +Q FR RLLDP VGD VEVAWKGKFRLES+DIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWV RDRLRWT+EQDLNK+I PNDDVEIWCCGSNVPGAWLEAKVR+VKGQ YCVGRVLSSGALWV RERVR+SPKG ARSLGKQGA++FFSRDAAAAAAAVGASCS+M
Sbjct: 1 MEQIAALSLTIPPQRAYSSTSEGSPCVSGLPKTFPERRFLSGSP-RSIPGPSSPASWKGS-QSSVPLGPTGAGTPNGRIMLNRFNTSSPRALGLRSPMSGMRSGLGAGWTRAIVDLYNAQDPEQMIRCLQEIQSLLRTQKLGK---AGVAKEQQQSKFCKKDLEAALNEKKKKNPNLFIPDVRRLSLEVMAEFFDKDRVNKLPSAVLIYTASFMSISELGMAASVCQQWKETVQSVAVWKPLYIKRFHFLHSPDDAST------------GIGLPLSYQALFRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRWTVEQDLNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSGALWVNRERVRISPKGGARSLGKQGASNFFSRDAAAAAAAVGASCSVM 434
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G02530.1 ID=NO13G02530.1|Name=NO13G02530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2427bp CACGATACGAAATTTAACGTCACGCGCATGCGCCATCTTCAAGTGCATAT GTCTCCGGTTTTGGTGGTGCCGGCTTTCCCGGCTTTCCCCGCATGCCGAG CCTTCCACACGATAAACACGGCAGCGGGATGTGCCACAACAACAAAACTA AGTTGGATACCGTGCTCGTCTTCCGTACTTTTTGTTGCGAAAAGAACCTT CATACACATTCACAAAATCTCTCGTAGACTTGCTTGCTCTCGCTATGCTG CTTCCCTTCCGGTCCCCACCTTTTTGCGAGTCTTCCTCGCTTCTTGCGCG TATTTATCTATCACAAACACACGCATGCTTTATTTTTGTCACTACATAGC ACGCGATGAAGGCCGTCTGGAGGACGAGGACTGCTTGGGGAGCCCCGAAA GCCCAGACCACTCACACTGTCGTTCTATCACACATAAAACACCCAGGGAC GTCCCTTGCACGGTTTCAACCCGCCTAGCTCGCTAGGCTACTTCCCTCGT GTCTCCAGCGCATCTGCACCAATCACTTCACTTCACAGCATTACTTCACC AAGAGGGGGAAATGGAGCGGATAGCGGCCCTGTCCCTGACGATCCCGCCC CCGGAGATCTGCACAAAAACGCCCGACGGCAGCCCTCGTGCCTTGGGTAT CCCCAAAAAAATTCCGGAGCGCCGTATCGTCTCATCTTTGCCCGGCTCCT CAAGTCCTGTACCTAGCAGTCCAGCGTCATGGAAAGGCTCCAGTCAAAGC AGCGTTGCCTTGGGACCCACCGCGGCCGGGACACCCACTAGTCGTACCAT GCTTCACCGTTTCCACACCTCGTCCCCGCGAGCCTTGGGCCTTCGTTCAC CCTTGTCAGGTATGCGTTCAGGTCTGGGTGCAGGTTGGACGCGGGCCATT GTTGATTTGTACCAGACCGAAGACCCGGACGAAATGATGCGGATCTTAAT GGAAATCCAAGCGCTGCTGCGCGTGCAAAAAATGGGCAATGGACGACACG CTGGGGGAAACAAGGAGCAGCAGCATGCCAAGTTTTGTAAAAAGGACCTG GAGGCAGCATTAAATGAGAAGAAGAAGAAGATGCCCTTGCTGTTTACGCC CGGCATCCGCCGCTTTAGCCTCGAGTTGCTCGCTGAGTTTTTTGACAAGG ACCACCTAAACAAGCTGCCTTCGGCCCTGCTTGTCTACACCACCTCTTTC CTCAGCACGTCTCAGCTGGGCGTCGCCGCCAGCGTCTGCCAGCAGTGGAA AGAAGTCGTAGGGAGCGATGCGGTCTGGAAGCCTTTGTATGTCAAACGTT TTAACTTTTTGAGTGCACCTGGCACCAAGGCTGCTGTTACTGCTGCTACT GCTGCTCCTGCTACTGGTGGTGGTAGCAGTCGGCTTTTGCCTTTTCAGCA GCAGTTTCGCAAGCGGCTCCTCGATCCGTCTGTAGGAGATTCGGTAGAGG TGGCTTGGAAGGGAAAGTTTCGGTTGGAGTCATTGGATATTTATCAGGGC TTGGCGTGGTGGTCGGCGGTGGTGGTGGAGAAGGGGGAAAATGGCGCACG GTACAAGATTCATTACCCCGGTTGGGACAGTCGGTGGGATGAATGGGTGC CTCGTGATAGACTGCGATGGACGATCGAGCAGGACTTGAACAAGAAGATT GGGCCCAATGACGACGTAGAGATTTGGTGCTGTGGAAGCAATGTGCCTGG TGCGTGGCTCGAGGCCAAGGTTCGGAGGGTCAAGGGCCAGAAATACTGTG TAGGGCGTGTCTTATCCTCTGGCGCCTTGTGGGTAGAACGAGAGCGTGTG CGGATGTCGCCTAAGGGTGCTGCTCGTTCTCTGGGAAAACAAGGCGCGGC AAGTTTTTTTTCGAGGGATGCGGCGGCGGCTGCGGCGGCGGTGGGTGCGA GCTGCTCTATCATGTAAGGGAGGAAACGGAGGAAGAAAGGAAGGGAGGGC TTGCTTATATTTTGGATAATAACGACAGATAAGACGGCAATGAGAAAGAG GGTGGCAGTCCTTCTCAGTGGATGAGAAATTTGTGTCTTCTCCTCTCTTC ATTTTTCCAGAAAGCTTCAAAAGGGAAAATCAAAGGGTCTAGACGGCCTC AGGTAGCTCTGGCAGCGGTGATGACGACTGAAGTCTTGTGATGAAGCGGC CAACGCCGTCGAGTTAAACGACAAAGAAAGTAAGTAGAAGAAAAAGAGTT CAAAGAAAGTGAGTGAGCGAGTGAGTGCGTGAGTGACTGAACAAAGGAAA TGAGAAAAATGAAGAGAGGTGCATATGTCTGTGTATGTGTAAATTGACCA AGAGAAAATGTTGTAAGAAACAATTTTTTGCCTTGTGGACGGCCGTTTGA AAGGAAAAAGGAAGGAGGAGAGAACAAATAAGAAATAGTGGGCGATGGGG CGAAAATTGAGGTGGGAATAAGTCGGT back to topprotein sequence of NO13G02530.1 >NO13G02530.1-protein ID=NO13G02530.1-protein|Name=NO13G02530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp MERIAALSLTIPPPEICTKTPDGSPRALGIPKKIPERRIVSSLPGSSSPV PSSPASWKGSSQSSVALGPTAAGTPTSRTMLHRFHTSSPRALGLRSPLSG MRSGLGAGWTRAIVDLYQTEDPDEMMRILMEIQALLRVQKMGNGRHAGGN KEQQHAKFCKKDLEAALNEKKKKMPLLFTPGIRRFSLELLAEFFDKDHLN KLPSALLVYTTSFLSTSQLGVAASVCQQWKEVVGSDAVWKPLYVKRFNFL SAPGTKAAVTAATAAPATGGGSSRLLPFQQQFRKRLLDPSVGDSVEVAWK GKFRLESLDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVPRDR LRWTIEQDLNKKIGPNDDVEIWCCGSNVPGAWLEAKVRRVKGQKYCVGRV LSSGALWVERERVRMSPKGAARSLGKQGAASFFSRDAAAAAAAVGASCSI M* back to topmRNA from alignment at chr13:704458..706884+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G02530.1 ID=NO13G02530.1|Name=NO13G02530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2427bp|location=Sequence derived from alignment at chr13:704458..706884+ (Nannochloropsis oceanica) CACGATACGAAATTTAACGTCACGCGCATGCGCCATCTTCAAGTGCATAT
GTCTCCGGTTTTGGTGGTGCCGGCTTTCCCGGCTTTCCCCGCATGCCGAG
CCTTCCACACGATAAACACGGCAGCGGGATGTGCCACAACAACAAAACTA
AGTTGGATACCGTGCTCGTCTTCCGTACTTTTTGTTGCGAAAAGAACCTT
CATACACATTCACAAAATCTCTCGTAGACTTGCTTGCTCTCGCTATGCTG
CTTCCCTTCCGGTCCCCACCTTTTTGCGAGTCTTCCTCGCTTCTTGCGCG
TATTTATCTATCACAAACACACGCATGCTTTATTTTTGTCACTACATAGC
ACGCGATGAAGGCCGTCTGGAGGACGAGGACTGCTTGGGGAGCCCCGAAA
GCCCAGACCACTCACACTGTCGTTCTATCACACATAAAACACCCAGGGAC
GTCCCTTGCACGGTTTCAACCCGCCTAGCTCGCTAGGCTACTTCCCTCGT
GTCTCCAGCGCATCTGCACCAATCACTTCACTTCACAGCATTACTTCACC
AAGAGGGGGAAATGGAGCGGATAGCGGCCCTGTCCCTGACGATCCCGCCC
CCGGAGATCTGCACAAAAACGCCCGACGGCAGCCCTCGTGCCTTGGGTAT
CCCCAAAAAAATTCCGGAGCGCCGTATCGTCTCATCTTTGCCCGGCTCCT
CAAGTCCTGTACCTAGCAGTCCAGCGTCATGGAAAGGCTCCAGTCAAAGC
AGCGTTGCCTTGGGACCCACCGCGGCCGGGACACCCACTAGTCGTACCAT
GCTTCACCGTTTCCACACCTCGTCCCCGCGAGCCTTGGGCCTTCGTTCAC
CCTTGTCAGGTATGCGTTCAGGTCTGGGTGCAGGTTGGACGCGGGCCATT
GTTGATTTGTACCAGACCGAAGACCCGGACGAAATGATGCGGATCTTAAT
GGAAATCCAAGCGCTGCTGCGCGTGCAAAAAATGGGCAATGGACGACACG
CTGGGGGAAACAAGGAGCAGCAGCATGCCAAGTTTTGTAAAAAGGACCTG
GAGGCAGCATTAAATGAGAAGAAGAAGAAGATGCCCTTGCTGTTTACGCC
CGGCATCCGCCGCTTTAGCCTCGAGTTGCTCGCTGAGTTTTTTGACAAGG
ACCACCTAAACAAGCTGCCTTCGGCCCTGCTTGTCTACACCACCTCTTTC
CTCAGCACGTCTCAGCTGGGCGTCGCCGCCAGCGTCTGCCAGCAGTGGAA
AGAAGTCGTAGGGAGCGATGCGGTCTGGAAGCCTTTGTATGTCAAACGTT
TTAACTTTTTGAGTGCACCTGGCACCAAGGCTGCTGTTACTGCTGCTACT
GCTGCTCCTGCTACTGGTGGTGGTAGCAGTCGGCTTTTGCCTTTTCAGCA
GCAGTTTCGCAAGCGGCTCCTCGATCCGTCTGTAGGAGATTCGGTAGAGG
TGGCTTGGAAGGGAAAGTTTCGGTTGGAGTCATTGGATATTTATCAGGGC
TTGGCGTGGTGGTCGGCGGTGGTGGTGGAGAAGGGGGAAAATGGCGCACG
GTACAAGATTCATTACCCCGGTTGGGACAGTCGGTGGGATGAATGGGTGC
CTCGTGATAGACTGCGATGGACGATCGAGCAGGACTTGAACAAGAAGATT
GGGCCCAATGACGACGTAGAGATTTGGTGCTGTGGAAGCAATGTGCCTGG
TGCGTGGCTCGAGGCCAAGGTTCGGAGGGTCAAGGGCCAGAAATACTGTG
TAGGGCGTGTCTTATCCTCTGGCGCCTTGTGGGTAGAACGAGAGCGTGTG
CGGATGTCGCCTAAGGGTGCTGCTCGTTCTCTGGGAAAACAAGGCGCGGC
AAGTTTTTTTTCGAGGGATGCGGCGGCGGCTGCGGCGGCGGTGGGTGCGA
GCTGCTCTATCATGTAAGGGAGGAAACGGAGGAAGAAAGGAAGGGAGGGC
TTGCTTATATTTTGGATAATAACGACAGATAAGACGGCAATGAGAAAGAG
GGTGGCAGTCCTTCTCAGTGGATGAGAAATTTGTGTCTTCTCCTCTCTTC
ATTTTTCCAGAAAGCTTCAAAAGGGAAAATCAAAGGGTCTAGACGGCCTC
AGGTAGCTCTGGCAGCGGTGATGACGACTGAAGTCTTGTGATGAAGCGGC
CAACGCCGTCGAGTTAAACGACAAAGAAAGTAAGTAGAAGAAAAAGAGTT
CAAAGAAAGTGAGTGAGCGAGTGAGTGCGTGAGTGACTGAACAAAGGAAA
TGAGAAAAATGAAGAGAGGTGCATATGTCTGTGTATGTGTAAATTGACCA
AGAGAAAATGTTGTAAGAAACAATTTTTTGCCTTGTGGACGGCCGTTTGA
AAGGAAAAAGGAAGGAGGAGAGAACAAATAAGAAATAGTGGGCGATGGGG
CGAAAATTGAGGTGGGAATAAGTCGGT back to topCoding sequence (CDS) from alignment at chr13:704458..706884+ >NO13G02530.1 ID=NO13G02530.1|Name=NO13G02530.1|organism=Nannochloropsis oceanica|type=CDS|length=1356bp|location=Sequence derived from alignment at chr13:704458..706884+ (Nannochloropsis oceanica) ATGGAGCGGATAGCGGCCCTGTCCCTGACGATCCCGCCCCCGGAGATCTG CACAAAAACGCCCGACGGCAGCCCTCGTGCCTTGGGTATCCCCAAAAAAA TTCCGGAGCGCCGTATCGTCTCATCTTTGCCCGGCTCCTCAAGTCCTGTA CCTAGCAGTCCAGCGTCATGGAAAGGCTCCAGTCAAAGCAGCGTTGCCTT GGGACCCACCGCGGCCGGGACACCCACTAGTCGTACCATGCTTCACCGTT TCCACACCTCGTCCCCGCGAGCCTTGGGCCTTCGTTCACCCTTGTCAGGT ATGCGTTCAGGTCTGGGTGCAGGTTGGACGCGGGCCATTGTTGATTTGTA CCAGACCGAAGACCCGGACGAAATGATGCGGATCTTAATGGAAATCCAAG CGCTGCTGCGCGTGCAAAAAATGGGCAATGGACGACACGCTGGGGGAAAC AAGGAGCAGCAGCATGCCAAGTTTTGTAAAAAGGACCTGGAGGCAGCATT AAATGAGAAGAAGAAGAAGATGCCCTTGCTGTTTACGCCCGGCATCCGCC GCTTTAGCCTCGAGTTGCTCGCTGAGTTTTTTGACAAGGACCACCTAAAC AAGCTGCCTTCGGCCCTGCTTGTCTACACCACCTCTTTCCTCAGCACGTC TCAGCTGGGCGTCGCCGCCAGCGTCTGCCAGCAGTGGAAAGAAGTCGTAG GGAGCGATGCGGTCTGGAAGCCTTTGTATGTCAAACGTTTTAACTTTTTG AGTGCACCTGGCACCAAGGCTGCTGTTACTGCTGCTACTGCTGCTCCTGC TACTGGTGGTGGTAGCAGTCGGCTTTTGCCTTTTCAGCAGCAGTTTCGCA AGCGGCTCCTCGATCCGTCTGTAGGAGATTCGGTAGAGGTGGCTTGGAAG GGAAAGTTTCGGTTGGAGTCATTGGATATTTATCAGGGCTTGGCGTGGTG GTCGGCGGTGGTGGTGGAGAAGGGGGAAAATGGCGCACGGTACAAGATTC ATTACCCCGGTTGGGACAGTCGGTGGGATGAATGGGTGCCTCGTGATAGA CTGCGATGGACGATCGAGCAGGACTTGAACAAGAAGATTGGGCCCAATGA CGACGTAGAGATTTGGTGCTGTGGAAGCAATGTGCCTGGTGCGTGGCTCG AGGCCAAGGTTCGGAGGGTCAAGGGCCAGAAATACTGTGTAGGGCGTGTC TTATCCTCTGGCGCCTTGTGGGTAGAACGAGAGCGTGTGCGGATGTCGCC TAAGGGTGCTGCTCGTTCTCTGGGAAAACAAGGCGCGGCAAGTTTTTTTT CGAGGGATGCGGCGGCGGCTGCGGCGGCGGTGGGTGCGAGCTGCTCTATC ATGTAA back to top
|