NO13G02420, NO13G02420 (gene) Nannochloropsis oceanica

Overview
NameNO13G02420
Unique NameNO13G02420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1818
Alignment locationchr13:669095..670912 +

Link to JBrowse

Properties
Property NameValue
DescriptionUdp-glc gal endoplasmic reticulum nucleotide sugar transporter
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:669095..670912 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR013657UAA
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO13G02420 vs. NCBI_GenBank
Match: EWM21922.1 (udp-glc gal endoplasmic reticulum nucleotide sugar transporter [Nannochloropsis gaditana])

HSP 1 Score: 487.3 bits (1253), Expect = 4.900e-134
Identity = 262/381 (68.77%), Postives = 294/381 (77.17%), Query Frame = 0
Query:    3 VQTRRQSMGGNATAAAIAARSIGTKKTAKAQPHESGSGVRLLIKALGIYVCFIYWGLVQERVTTTAYKPAADLDAKPGRFNAMAALNAFMAAAAVIVGLILHQLTKGTTAPFTTFWRPALSNTIASPIGYMSLRDISYPLLILVKNCKLLPVMLVGAVVNGVRYKTYEYVAVALISCGVMLFMVKGPQASGEGGRHGGHYDISASYAVGGQSNKKVSPLEAAVARDNLWMMIQAVMGIVASSFTFQEVRGLSMAATNLLIDGFTNAEQDRIYQKSRVSPYYMMAMVNIWSLIFASCFLLSDLVLREDGSQLAYTVRFLTTYPAIIRDLLTFSFSNAVGQVFIYSIIDEFGSLVSVTVTVTRKMITLFISIIAYKHAVHWWQ 384
            VQTRR +M   A       R      TA        + +RL+ KALGIYVCFIYWG VQE+VTTTAYK AA    KPG FNAM  LNAFMAAAA IVG++LHQ+ KGTTAPF+ FWRPALSNT+ASPIGY+SLRDISYPLLILVKNCKLLPVMLVGA+VNGVRYK +EY AVALISCGVMLFM KGP+ S     H    D   S ++   S+ + S L  A+ARDNLWM+IQA+ G+V SSF+ QE+RGL MA  NLLIDGFTNAEQDRI +K RVSPYYMMAMVN WSL FA  FLL DL+ R  GSQLAYT+ FLT YPAII D+LTFSFSNA+GQVFIYSIIDEFGSL  VTVT+TRK+ITLFISI+ YKH VHWWQ
Sbjct:    2 VQTRRMTMTTKAANTDFTKRD--ETFTANPPKKNISNAIRLMAKALGIYVCFIYWGFVQEKVTTTAYKSAAGRQEKPGIFNAMITLNAFMAAAATIVGVLLHQVNKGTTAPFSIFWRPALSNTLASPIGYLSLRDISYPLLILVKNCKLLPVMLVGALVNGVRYKPHEYAAVALISCGVMLFMFKGPEVSDADVGH----DSGWSKSIRTASHPRRSSLGDAIARDNLWMIIQALGGMVYSSFSLQELRGLCMAIINLLIDGFTNAEQDRINKKHRVSPYYMMAMVNTWSLCFALSFLLLDLIWRNQGSQLAYTIHFLTAYPAIITDILTFSFSNALGQVFIYSIIDEFGSLTCVTVTITRKIITLFISIVIYKHTVHWWQ 376          
BLAST of NO13G02420 vs. NCBI_GenBank
Match: CBJ31318.1 (UDP-Glc/Gal endoplasmic reticulum nucleotide sugar transporter [Ectocarpus siliculosus])

HSP 1 Score: 185.7 bits (470), Expect = 3.000e-43
Identity = 127/355 (35.77%), Postives = 179/355 (50.42%), Query Frame = 0
Query:   39 SGVRLLIKALGIYVCFIYWGLVQERVTTTAYKPAADLDAKPGRFNAMAALNAFMAAAAVIVGLILHQLTKGT--TAPFTTFWRPALSNTIASPIGYMSLRDISYPLLILVKNCKLLPVMLVGAVVNGVRYKTYEYVAVALISCGVMLFMVKGPQASGEGGRHGGHYDISASYAVGGQSNKKVSPLEAAVARDNLWMMIQAVMGIVASSFTFQEVRGLSMAATNLLIDGFTNAEQDRIYQKSRVSPYYMMAMVNIWSLIFASCFLLSDLVLREDGSQLAYTVRFLTTYP-------AIIRDLLTFSFSNAVGQVFIYSIIDEFGSLVSVTVTVTRKMITLFISIIAYKH--AVHWW 383
            S V+L+  A G+Y  F+YWG +QE++T   Y    D +   GR++    LNA MA A ++   +L  +T  T        FWRPAL+ T+ASP GY SL  ISYPLL+L K+CKL+PVMLVG V+ G R+   EY+AV LI+ GV LF +K       G                   N  +                                 GL++   NLL+DG TNAEQDRI  +      YMM  +N W L F + +L +   +    S+LA  + F+ T+P        +I+++  F      GQ+F++ II EFGSLV+VTVTV+RK  ++ +S+  Y H  A+  W
Sbjct:    5 SEVKLVSAAAGLYSSFLYWGYLQEKITGVDYVSPHDANV-TGRWHFSFVLNACMAMAGILAASLLLLITGETKGNPHVKNFWRPALTCTLASPFGYWSLSYISYPLLLLAKSCKLVPVMLVGVVLLGRRHTRAEYLAVGLITAGVALFSLK------PGAXXXXXXXXXXXXXXXXXXNNAI---------------------------------GLALVTVNLLLDGVTNAEQDRINARFNAPGSYMMLAINFWILTFHAVYLGAGWAVFGPESELAKALYFMATFPENHLPVRQVIKNVAAFCLCAGTGQLFVFFIIKEFGSLVNVTVTVSRKFFSVLVSVYIYGHRLALRQW 319          
BLAST of NO13G02420 vs. NCBI_GenBank
Match: ORY98892.1 (UAA transporter [Syncephalastrum racemosum])

HSP 1 Score: 175.6 bits (444), Expect = 3.200e-40
Identity = 120/341 (35.19%), Postives = 168/341 (49.27%), Query Frame = 0
Query:   48 LGIYVCFIYWGLVQERVTTTAYKPAADLDAKPGRFNAMAALNAFMAAAAVIVGLILHQ-------LTKGTTAPFTTFWRPALSNTIASPIGYMSLRDISYPLLILVKNCKLLPVMLVGAVVNGVRYKTYEYVAVALISCGVMLFMVKGPQASGEGGRHGGHYDISASYAVGGQSNKKVSPLEAAVARDNLWMMIQAVMGIVASSFTFQEVRGLSMAATNLLIDGFTNAEQDRIYQ--KSRVSPYYMMAMVNIWSLIFASCFLLSDLVLREDGSQLAYTVRFLTTYPAIIRDLLTFSFSNAVGQVFIYSIIDEFGSLVSVTVTVTRKMITLFISIIAYKHAV 380
            +GIY CF+ WG+VQERV+TT Y       AKP +F     LN   +  A +V LI  +       LT    A +  + + AL N   SP GY +L+ I YP +IL K+CKL+PVML+  VV    +  Y+YV VAL++ GV +FM                                            L+  ++   G  A+S     + GL + ATNL IDG TNA QD+I+      VS  +MM  +N    +F + +LL          +L     F T YPA+IRD+L F    A+GQ FI+  + E+GSL  VTVTVTRK+ T+ +S+  + HA+
Sbjct:    9 IGIYTCFLTWGVVQERVSTTPYGDG----AKPAKFRFFIVLNLVQSVIAAVVALIYIKGSGRQLNLTSSPRALYAKYAQVALLNCTGSPFGYAALKHIDYPTMILGKSCKLVPVMLMNVVVYRRHFPLYKYVCVALVTTGVSMFM--------------------------------------------LYQTVEHTKGAAANS-----LWGLFLLATNLAIDGLTNATQDQIFHAYSRHVSGQHMMFFMNAIGAVFMAVYLL------VGSDELGQAYAFFTLYPAVIRDVLLFGLCGALGQCFIFYTLQEYGSLRLVTVTVTRKLFTMLLSVFWFNHAL 290          
BLAST of NO13G02420 vs. NCBI_GenBank
Match: ORZ32412.1 (UAA transporter [Catenaria anguillulae PL171])

HSP 1 Score: 174.5 bits (441), Expect = 7.000e-40
Identity = 115/341 (33.72%), Postives = 176/341 (51.61%), Query Frame = 0
Query:   48 LGIYVCFIYWGLVQERVTTTAYKPA---ADLDAKPGRFNAMAALNAFMAAAAVIVGLILHQLTKGTT------APFTTFWRPALSNTIASPIGYMSLRDISYPLLILVKNCKLLPVMLVGAVVNGVRYKTYEYVAVALISCGVMLFMVKGPQASGEGGRHGGHYDISASYAVGGQSNKKVSPLEAAVARDNLWMMIQAVMGIVASSFTFQEVRGLSMAATNLLIDGFTNAEQDRIYQKSRVSPYYMMAMVNIWSLIFASCFLLSDLVLREDGSQLAYTVRFLTTYPAIIRDLLTFSFSNAVGQVFIYSIIDEFGSLVSVTVTVTRKMITLFISIIAYKHAV 380
            +GIY CF+ WGL+QERVT T Y  A    D    P  F +   LN   +  A +VG I   L +G +      +    ++  AL N++ASP GY +L+ I YP +IL K+CKLLPVM +  +V+   +  ++  AVAL++ GV  FM+   Q  G+GG+  G                         A ++LW                    GL +   NL IDG TN+ QD +++  R+S   MM M+N+ S +  S +L    +     ++LA    F+  YPA+++D++ F+ + A+GQVFI+  +  FGSL  VT+TVTRKM ++ +S++ Y H +
Sbjct:   10 VGIYSCFLTWGLLQERVTATPYTSALSPTDPSGAPVYFRSFIVLNLLQSLLAALVGAIYLFLFRGQSLGPRHPSVLKRYFGVALFNSLASPFGYAALKYIDYPTMILGKSCKLLPVMAMAVLVHRATFPRHQVAAVALVTLGVSAFMLLHDQ-EGKGGKAKG------------------------AASNSLW--------------------GLFLLGINLAIDGLTNSTQDAMFKTYRISGQQMMVMMNLASALLMSAYLALPWL---SNNELAVAWAFVNQYPAVLKDMVMFAGAGALGQVFIFHTLGRFGSLSLVTITVTRKMFSIILSVVMYDHRI 302          
BLAST of NO13G02420 vs. NCBI_GenBank
Match: KNE62430.1 (hypothetical protein AMAG_07649 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 172.9 bits (437), Expect = 2.000e-39
Identity = 114/345 (33.04%), Postives = 175/345 (50.72%), Query Frame = 0
Query:   41 VRLLIKALGIYVCFIYWGLVQERVTTTAYKPAADLDAKPGRFNAMAALNAFMAAAAVIVG----LILHQLTKGTTAP--FTTFWRPALSNTIASPIGYMSLRDISYPLLILVKNCKLLPVMLVGAVVNGVRYKTYEYVAVALISCGVMLFMVKGPQASGEGGRHGGHYDISASYAVGGQSNKKVSPLEAAVARDNLWMMIQAVMGIVASSFTFQEVRGLSMAATNLLIDGFTNAEQDRIYQKSRVSPYYMMAMVNIWSLIFASCFLLSDLVLREDGSQLAYTVRFLTTYPAIIRDLLTFSFSNAVGQVFIYSIIDEFGSLVSVTVTVTRKMITLFISIIAYKHAV 380
            V L     GIY CF+ WG++QERVTTTAY  A     +P  F +   LN   A  A  VG    L++ + T G  +P     +   A+ N++ASP GY +LR I YP +IL K+CKL+PVM +  +++   +  ++Y++VA+++ GV LFM+   Q     G  G                            +++W                    GL + A NL IDG TN+ QD + +  +V+   MM M+N  S +    +L    V    G +LA    F+ T+PA+++D+  F+   A+GQVFI+  +  FGSL+ VT+TVTRKM ++ +S++ Y H +
Sbjct:    3 VELAFCVAGIYACFLTWGVLQERVTTTAYGSA----NQPAYFKSFIVLNFLQAVMACAVGSIYLLVIRRGTLGPRSPAVLARYLLVAVFNSLASPFGYAALRHIDYPTMILGKSCKLIPVMAMAVLLHRASFPRHQYLSVAMVTLGVSLFMLLHDQERPSKGAKG----------------------------NSVW--------------------GLFLLAINLAIDGVTNSTQDAMVRTFKVTGQQMMVMMNACSALLMWTYLSIPAV---SGGELASATAFVKTHPAVLKDMALFALCGALGQVFIFHTLGRFGSLLLVTITVTRKMFSIILSVLMYNHHI 292          
BLAST of NO13G02420 vs. NCBI_GenBank
Match: KNE65890.1 (hypothetical protein AMAG_09854 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 172.2 bits (435), Expect = 3.500e-39
Identity = 113/337 (33.53%), Postives = 173/337 (51.34%), Query Frame = 0
Query:   49 GIYVCFIYWGLVQERVTTTAYKPAADLDAKPGRFNAMAALNAFMAAAAVIVG----LILHQLTKGTTAP--FTTFWRPALSNTIASPIGYMSLRDISYPLLILVKNCKLLPVMLVGAVVNGVRYKTYEYVAVALISCGVMLFMVKGPQASGEGGRHGGHYDISASYAVGGQSNKKVSPLEAAVARDNLWMMIQAVMGIVASSFTFQEVRGLSMAATNLLIDGFTNAEQDRIYQKSRVSPYYMMAMVNIWSLIFASCFLLSDLVLREDGSQLAYTVRFLTTYPAIIRDLLTFSFSNAVGQVFIYSIIDEFGSLVSVTVTVTRKMITLFISIIAYKHAV 380
            GIY CF+ WG++QERVTTTAY  A     +P  F +   LN   A  A  VG    LI+ + T G  +P     +   A+ N++ASP GY +LR I YP +IL K+CKL+PVM +  +++   +  ++Y++VA+++ GV LFM+   Q     G  G                            +++W                    GL + A NL IDG TN+ QD + +  +V+   MM M+N  S +    +L    V    G +LA    F+ T+PA+++D+  F+   A+GQVFI+  +  FGSL+ VT+TVTRKM ++ +S++ Y H +
Sbjct:   11 GIYACFLTWGVLQERVTTTAYGSA----DQPAYFKSFIVLNFLQAVMACAVGSIYLLIIRRGTLGPRSPAVLARYLLVAVFNSLASPFGYAALRHIDYPTMILGKSCKLIPVMAMAVLLHRASFPRHQYLSVAMVTLGVSLFMLLHDQERPSKGAKG----------------------------NSVW--------------------GLFLLAINLAIDGVTNSTQDAMVRTFKVTGQQMMVMMNACSALLMWTYLSIPAV---SGGELAAATAFVKTHPAVLKDMALFALCGALGQVFIFHTLGRFGSLLLVTITVTRKMFSIILSVLMYNHHI 292          
BLAST of NO13G02420 vs. NCBI_GenBank
Match: XP_018296640.1 (hypothetical protein PHYBLDRAFT_107673 [Phycomyces blakesleeanus NRRL 1555(-)] >OAD78600.1 hypothetical protein PHYBLDRAFT_107673 [Phycomyces blakesleeanus NRRL 1555(-)])

HSP 1 Score: 170.2 bits (430), Expect = 1.300e-38
Identity = 117/352 (33.24%), Postives = 177/352 (50.28%), Query Frame = 0
Query:   41 VRLLIKALGIYVCFIYWGLVQERVTTTAYKPAADLDAKPGRFNAMAALNAFMAAAAVIVGLILHQLT-------KGTTAPFTTFWRPALSNTIASPIGYMSLRDISYPLLILVKNCKLLPVMLVGAVVNGVRYKTYEYVAVALISCGVMLFMVKGPQASGEGGRHGGHYDISASYAVGGQSNKKVSPLEAAVARDNLWMMIQAVMGIVASSFTFQEVRGLSMAATNLLIDGFTNAEQDRIYQK--SRVSPYYMMAMVNIWSLIFASCFLLSDLVLREDGSQLAYTVRFLTTYPAIIRDLLTFSFSNAVGQVFIYSIIDEFGSLVSVTVTVTRKMITLFISIIAYKHAVHWWQ 384
            +R  +   GIY CF+ WG++QERV+TT Y      +  P +F     LN   +  A +V  I  ++T          T+ +  + + AL N I SP GY +LR I YP +IL K+CKL+PVM +  +V   R+  ++Y+ V LI+ GV +FM+       EGG                           A + +++W                    GL +  TNL IDG TNA QD+I+ K  S  S  +MM  +N++  IF++ +LL    +    ++L   + F + YPA+IRD+L F    AVGQ FI+  + ++GSL  VTVTVTRK+ T+ IS+  + H + + Q
Sbjct:    2 LRFALCVAGIYACFLTWGVIQERVSTTPY----GSEENPKKFRFFIVLNTIQSLIAALVAFIYIKVTGRHLNISSTPTSLYLKYAQVALFNCIGSPFGYAALRHIDYPTMILGKSCKLVPVMFMNVLVYRRRFPLHKYICVFLITVGVSMFML---YHRTEGG-------------------------SKAASTNSMW--------------------GLFLLCTNLAIDGLTNATQDQIFHKYPSHGSGQHMMFFMNVFGSIFSATYLL----IHPYNNELWQAIEFFSEYPAVIRDVLLFGLCGAVGQCFIFYTLYKYGSLRLVTVTVTRKLFTMLISVFWFNHVLSFGQ 297          
BLAST of NO13G02420 vs. NCBI_GenBank
Match: ORZ18514.1 (UAA transporter [Absidia repens])

HSP 1 Score: 169.1 bits (427), Expect = 2.900e-38
Identity = 121/347 (34.87%), Postives = 169/347 (48.70%), Query Frame = 0
Query:   42 RLLIKALGIYVCFIYWGLVQERVTTTAYKPAADLDAKPGRFNAMAALNAFMAAAAVIVGLILHQLT------KGT-TAPFTTFWRPALSNTIASPIGYMSLRDISYPLLILVKNCKLLPVMLVGAVVNGVRYKTYEYVAVALISCGVMLFMVKGPQASGEGGRHGGHYDISASYAVGGQSNKKVSPLEAAVARDNLWMMIQAVMGIVASSFTFQEVRGLSMAATNLLIDGFTNAEQDRIYQ--KSRVSPYYMMAMVNIWSLIFASCFLLSDLVLREDGSQLAYTVRFLTTYPAIIRDLLTFSFSNAVGQVFIYSIIDEFGSLVSVTVTVTRKMITLFISIIAYKHAV 380
            R     LGIY CF+ WG+VQERV+TT Y         P +F     LN   +  A +V  +  + T      K T    +  + + A  N I SP GY SL+ I YP +IL K+CKL+PVM +  +V   R+  ++Y+ VAL++ GV LFM+                     Y     SNKK      A A +++W                    GL +  TNL IDG TNA QD+I+    S VS  +MM  +N       S F  S LVL     +L   + F +T+PA+IRD+L F    A+GQ FI+  +  +GSL  VTVTVTRK+ T+ +S+  + H +
Sbjct:    3 RFAFCVLGIYTCFLTWGVVQERVSTTPYGD----QGTPKKFKFFIVLNLVQSLIAALVAFLYVKATGRRINLKSTPQGLYLKYAQVAFFNCIGSPFGYASLKHIDYPTMILGKSCKLVPVMFMNVLVYRRRFPLHKYICVALVTAGVSLFML---------------------YHNVDSSNKK------AAATNSMW--------------------GLFLLCTNLAIDGLTNATQDQIFHTYSSIVSGQHMMFYMN----AIGSLFSASYLVLHPYNDELQQAILFCSTHPAVIRDILLFGLCGAIGQCFIFYTLQHYGSLRLVTVTVTRKLFTMLLSVFWFNHVL 294          
BLAST of NO13G02420 vs. NCBI_GenBank
Match: KXS15917.1 (UAA transporter [Gonapodya prolifera JEL478])

HSP 1 Score: 168.7 bits (426), Expect = 3.900e-38
Identity = 108/336 (32.14%), Postives = 173/336 (51.49%), Query Frame = 0
Query:   49 GIYVCFIYWGLVQERVTTTAYKPAADLDAKPGRFNAMAALNAFMAAAAVIVGLILHQLTKGTTAP-----FTTFWRPALSNTIASPIGYMSLRDISYPLLILVKNCKLLPVMLVGAVVNGVRYKTYEYVAVALISCGVMLFMVKGPQASGEGGRHGGHYDISASYAVGGQSNKKVSPLEAAVARDNLWMMIQAVMGIVASSFTFQEVRGLSMAATNLLIDGFTNAEQDRIYQKSRVSPYYMMAMVNIWSLIFASCFLLSDLVLREDGSQLAYTVRFLTTYPAIIRDLLTFSFSNAVGQVFIYSIIDEFGSLVSVTVTVTRKMITLFISIIAYKHAV 380
            G+YVCF+ WG++QERV+T  Y    + DA P +F     +N   +  A I   +  ++   +         + + R ++ +++ASP GY +L+ I YP  IL K+CKL+PVM++G V+ G  Y  Y+ + V +I+ GV LFM+  P  S + G+H                         A A  NLW                    GL + + NL IDG TNA QD ++++ +++   +M  +N +S I  + +L+       D   L+  + F   +PA+ RD+L FS +  +GQ+FI+  +  FGSLV VTVTVTRKM ++ +S+I + H +
Sbjct:   16 GVYVCFLTWGVLQERVSTARYPDPTNPDAPPRKFKWFVFMNLIQSITATISAFLFIRIRGQSIGSISWPVLSQYARISIIHSLASPFGYAALKHIDYPTFILGKSCKLIPVMIMGRVLYGKTYAWYKVLGVGMITAGVSLFMLLHP--SEKSGKH-------------------------AQATSNLW--------------------GLLLLSANLAIDGITNAAQDHLFKQFKITSQQLMLWMNSFSSIIMATWLIGSNPWNGD---LSAAMSFCFDHPAVWRDILIFSLAGGIGQLFIFYTLGTFGSLVLVTVTVTRKMFSILLSVIWFGHVL 301          
BLAST of NO13G02420 vs. NCBI_GenBank
Match: ORX59566.1 (UAA transporter [Hesseltinella vesiculosa])

HSP 1 Score: 167.5 bits (423), Expect = 8.600e-38
Identity = 116/348 (33.33%), Postives = 170/348 (48.85%), Query Frame = 0
Query:   41 VRLLIKALGIYVCFIYWGLVQERVTTTAYKPAADLDAKPGRFNAMAALNAFMAAAAVIVGLILHQLTKG-------TTAPFTTFWRPALSNTIASPIGYMSLRDISYPLLILVKNCKLLPVMLVGAVVNGVRYKTYEYVAVALISCGVMLFMVKGPQASGEGGRHGGHYDISASYAVGGQSNKKVSPLEAAVARDNLWMMIQAVMGIVASSFTFQEVRGLSMAATNLLIDGFTNAEQDRIYQ--KSRVSPYYMMAMVNIWSLIFASCFLLSDLVLREDGSQLAYTVRFLTTYPAIIRDLLTFSFSNAVGQVFIYSIIDEFGSLVSVTVTVTRKMITLFISIIAYKHAV 380
            +R  I  LGIY CF+ WG+VQERV+TT Y      +  P +F     LN   +  A  V  +  +LT             +  + + A  N I SP GY SL+ I YP +IL K+CKL+PVM++  +V   R+  Y+Y+ VALI+ GV +FM+  P +S                             + A A ++LW                    GL +   NL IDG TNA QD+I+      VS  +MM  +N    +F++ +LL    L     +L   + F TT+PA+IRD++ F    A+GQ FI+  +  +GSL  VTVTVTRK+ T+ +S+  + H +
Sbjct:    2 LRFTICVLGIYACFLTWGVVQERVSTTPYGD----ETAPKKFKFFIVLNLVQSMIAACVAWLYLKLTNRQLNVALVPRGLYLKYAQVAFLNCIGSPFGYASLKHIDYPTMILGKSCKLVPVMMMNVLVYRRRFPLYKYLCVALITGGVSMFMLYQPTSSA----------------------------KMAAAANSLW--------------------GLFLLGMNLTIDGLTNATQDQIFHTYSQYVSGQHMMFFMNALGSLFSAMYLL----LHPYNDELWQAIDFCTTHPAVIRDIVLFGLCGALGQCFIFYTLQRYGSLRLVTVTVTRKLFTMLLSVFWFNHVL 293          
The following BLAST results are available for this feature:
BLAST of NO13G02420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21922.14.900e-13468.77udp-glc gal endoplasmic reticulum nucleotide sugar... [more]
CBJ31318.13.000e-4335.77UDP-Glc/Gal endoplasmic reticulum nucleotide sugar... [more]
ORY98892.13.200e-4035.19UAA transporter [Syncephalastrum racemosum][more]
ORZ32412.17.000e-4033.72UAA transporter [Catenaria anguillulae PL171][more]
KNE62430.12.000e-3933.04hypothetical protein AMAG_07649 [Allomyces macrogy... [more]
KNE65890.13.500e-3933.53hypothetical protein AMAG_09854 [Allomyces macrogy... [more]
XP_018296640.11.300e-3833.24hypothetical protein PHYBLDRAFT_107673 [Phycomyces... [more]
ORZ18514.12.900e-3834.87UAA transporter [Absidia repens][more]
KXS15917.13.900e-3832.14UAA transporter [Gonapodya prolifera JEL478][more]
ORX59566.18.600e-3833.33UAA transporter [Hesseltinella vesiculosa][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001653NSK001653Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02420.1NO13G02420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596269gene_6769Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100070g26gene8531Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02420.1NO13G02420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02420 ID=NO13G02420|Name=NO13G02420|organism=Nannochloropsis oceanica|type=gene|length=1818bp
ACAGACTAGACCTTATTCCCTGCCGTCGCACCACCTCCCCACCCCTACTG
CAAGAAGATAGGAAGAACCAGCTTTCCCGCTCAAAAATCCCTGAAAGACT
ACTCAGAGCGGCAGCTGTGGTCAAGGGTGACCCGTTGTCAAGACATGGCG
GTGCAAACGAGGCGGCAGTCCATGGGGGGAAATGCCACTGCCGCGGCCAT
TGCTGCCAGAAGCATAGGCACTAAAAAGACTGCCAAGGCACAACCTCATG
AGAGCGGAAGCGGGGTCCGATTGTTGATTAAAGCCTTGGGCATCTATGTT
TGCTTCATTTACTGGGGCCTTGTGCAAGAAAGAGTGACCACCACTGCTTA
CAAGCCAGCAGCCGATTTGGACGCCAAGCCCGGCAGGTTCAATGCCATGG
CCGCGCTCAACGCCTTCATGGCCGCTGCCGCCGTGATTGTAGGCTTGATC
CTACACCAGTTGACCAAGGGCACCACCGCCCCTTTTACCACCTTTTGGCG
GCCCGCGTTGAGCAACACTATTGCATCCCCAATCGGGTACATGTCGTTGC
GAGACATTTCATATCCCCTCCTCATTCTGGTGAAGAATTGCAAGCTCTTG
CCAGTCATGCTTGTAGGCGCTGTCGTGAATGGCGTGCGTTACAAGACATA
TGAATACGTGGCCGTGGCGTTGATTTCATGTGGCGTGATGCTATTTATGG
TCAAGGGACCTCAAGCCAGTGGTGAAGGGGGCCGTCACGGCGGGCACTAC
GACATAAGCGCAAGCTATGCCGTAGGCGGGCAGAGCAACAAGAAGGTTTC
TCCTTTGGAGGCAGCGGTGGCAAGGGACAATCTTTGGATGATGATCCAGG
CGGTTATGGGGATTGTAGCTTCGAGCTTTACCTTCCAAGAGGTACGGGGC
CTTTCCATGGCAGCGACCAATTTATTGATTGATGGGTTTACCAATGCGGA
GCAGGATCGGATTTACCAGAAGTCTCGCGTCTCGCCTTATTACATGATGG
CCATGGTCAATATCTGGTCGCTCATTTTCGCCTCATGTTTTCTGTTGTCG
GACTTGGTTTTACGGGAAGATGGATCCCAGCTGGCATATACTGTCAGGTT
TCTGACAACGTATCCGGCAATCATCAGGGATTTGCTCACGTTTAGCTTTT
CGAACGCGGTGGGGCAGGTGTTTATCTACAGCATgtaagtgcaatggtct
tttccttccggacgtcctcctctccctcgtttgccgaccatttgacttgt
tcttgctggattactcacaccttcttcctcttccccacctcctcctttcc
tcactctctcgctctcttcctgttctagCATTGATGAGTTTGGGAGCTTG
GTGTCGGTCACAGTTACGGTGACTCGCAAAATGATCACGCTTTTTATCAG
CATCATCGCGTACAAGCATGCGGTGCACTGGTGGCAGTGGATGGGCGTAG
CTTCTGTCTTTATCGGTCTTGGTATCAAAGTCTTGTGGGGCGGTGGTGGG
CATGGCCATGGCGCAACAGCAGCAATTGCCAAGTCCAAGACCAAGTAAGA
GAGAGATCCGCGTCCGCACGTATTTCAAACCACAGCCATCGATTTGTTGC
TGCAGCGGCGACAGTTGCGAGGACATTTATGGACACGCACAAAGATTTGA
TTGGGGGATAAAAAGACTGACGGAATACGCTTTGATGATGGCAAAACAAG
AACAAAACCACGAAATTGTGGCCGCGTGTATGTGTACGGGCTGGGAGAGT
ATTTTTAAAACAGTAATATATACCCACAAGGCACGCACAACAGAAGGACG
ACGAACAAGAAAATTAAA
back to top

protein sequence of NO13G02420.1

>NO13G02420.1-protein ID=NO13G02420.1-protein|Name=NO13G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp
MAVQTRRQSMGGNATAAAIAARSIGTKKTAKAQPHESGSGVRLLIKALGI
YVCFIYWGLVQERVTTTAYKPAADLDAKPGRFNAMAALNAFMAAAAVIVG
LILHQLTKGTTAPFTTFWRPALSNTIASPIGYMSLRDISYPLLILVKNCK
LLPVMLVGAVVNGVRYKTYEYVAVALISCGVMLFMVKGPQASGEGGRHGG
HYDISASYAVGGQSNKKVSPLEAAVARDNLWMMIQAVMGIVASSFTFQEV
RGLSMAATNLLIDGFTNAEQDRIYQKSRVSPYYMMAMVNIWSLIFASCFL
LSDLVLREDGSQLAYTVRFLTTYPAIIRDLLTFSFSNAVGQVFIYSIIDE
FGSLVSVTVTVTRKMITLFISIIAYKHAVHWWQWMGVASVFIGLGIKVLW
GGGGHGHGATAAIAKSKTK*
back to top
Synonyms
Publications