NO13G02420.1, NO13G02420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02420.1
Unique NameNO13G02420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1674
Alignment locationchr13:669095..670912 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:669095..670912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02420.1 vs.
Match: EWM21922.1 (udp-glc gal endoplasmic reticulum nucleotide sugar transporter [Nannochloropsis gaditana])

HSP 1 Score: 523.5 bits (1347), Expect = 6.200e-145
Identity = 281/414 (67.87%), Postives = 317/414 (76.57%), Query Frame = 0 
Query:    3 VQTRRQSMGGNATAAAIAARSIGTKKTAKAQPHESGSGVRLLIKALGIYVCFIYWGLVQERVTTTAYKPAADLDAKPGRFNAMAALNAFMAAAAVIVGLILHQLTKGTTAPFTTFWRPALSNTIASPIGYMSLRDISYPLLILVKNCKLLPVMLVGAVVNGVRYKTYEYVAVALISCGVMLFMVKGPQASGEGGRHGGHYDISASYAVGGQSNKKVSPLEAAVARDNLWMMIQAVMGIVASSFTFQEVRGLSMAATNLLIDGFTNAEQDRIYQKSRVSPYYMMAMVNIWSLIFASCFLLSDLVLREDGSQLAYTVRFLTTYPAIIRDLLTFSFSNAVGQVFIYSIIDEFGSLVSVTVTVTRKMITLFISIIAYKHAVHWWQWMGVASVFIGLGIKVLWGGGGHGHGATAAIAKS 417
            VQTRR +M   A       R      TA        + +RL+ KALGIYVCFIYWG VQE+VTTTAYK AA    KPG FNAM  LNAFMAAAA IVG++LHQ+ KGTTAPF+ FWRPALSNT+ASPIGY+SLRDISYPLLILVKNCKLLPVMLVGA+VNGVRYK +EY AVALISCGVMLFM KGP+ S     H    D   S ++   S+ + S L  A+ARDNLWM+IQA+ G+V SSF+ QE+RGL MA  NLLIDGFTNAEQDRI +K RVSPYYMMAMVN WSL FA  FLL DL+ R  GSQLAYT+ FLT YPAII D+LTFSFSNA+GQVFIYSIIDEFGSL  VTVT+TRK+ITLFISI+ YKH VHWWQWMGV SVF+GL IK+   GG HGHG   + AK+
Sbjct:    2 VQTRRMTMTTKAANTDFTKRD--ETFTANPPKKNISNAIRLMAKALGIYVCFIYWGFVQEKVTTTAYKSAAGRQEKPGIFNAMITLNAFMAAAATIVGVLLHQVNKGTTAPFSIFWRPALSNTLASPIGYLSLRDISYPLLILVKNCKLLPVMLVGALVNGVRYKPHEYAAVALISCGVMLFMFKGPEVSDADVGH----DSGWSKSIRTASHPRRSSLGDAIARDNLWMIIQALGGMVYSSFSLQELRGLCMAIINLLIDGFTNAEQDRINKKHRVSPYYMMAMVNTWSLCFALSFLLLDLIWRNQGSQLAYTIHFLTAYPAIITDILTFSFSNALGQVFIYSIIDEFGSLTCVTVTITRKIITLFISIVIYKHTVHWWQWMGVFSVFLGLCIKIFQSGGDHGHGPLESKAKT 409
The following BLAST results are available for this feature:
BLAST of NO13G02420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21922.16.200e-14567.87udp-glc gal endoplasmic reticulum nucleotide sugar... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02420NO13G02420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02420.1NO13G02420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02420.1.cds1NO13G02420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02420.1.cds2NO13G02420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02420.1 ID=NO13G02420.1|Name=NO13G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1674bp
ACAGACTAGACCTTATTCCCTGCCGTCGCACCACCTCCCCACCCCTACTG
CAAGAAGATAGGAAGAACCAGCTTTCCCGCTCAAAAATCCCTGAAAGACT
ACTCAGAGCGGCAGCTGTGGTCAAGGGTGACCCGTTGTCAAGACATGGCG
GTGCAAACGAGGCGGCAGTCCATGGGGGGAAATGCCACTGCCGCGGCCAT
TGCTGCCAGAAGCATAGGCACTAAAAAGACTGCCAAGGCACAACCTCATG
AGAGCGGAAGCGGGGTCCGATTGTTGATTAAAGCCTTGGGCATCTATGTT
TGCTTCATTTACTGGGGCCTTGTGCAAGAAAGAGTGACCACCACTGCTTA
CAAGCCAGCAGCCGATTTGGACGCCAAGCCCGGCAGGTTCAATGCCATGG
CCGCGCTCAACGCCTTCATGGCCGCTGCCGCCGTGATTGTAGGCTTGATC
CTACACCAGTTGACCAAGGGCACCACCGCCCCTTTTACCACCTTTTGGCG
GCCCGCGTTGAGCAACACTATTGCATCCCCAATCGGGTACATGTCGTTGC
GAGACATTTCATATCCCCTCCTCATTCTGGTGAAGAATTGCAAGCTCTTG
CCAGTCATGCTTGTAGGCGCTGTCGTGAATGGCGTGCGTTACAAGACATA
TGAATACGTGGCCGTGGCGTTGATTTCATGTGGCGTGATGCTATTTATGG
TCAAGGGACCTCAAGCCAGTGGTGAAGGGGGCCGTCACGGCGGGCACTAC
GACATAAGCGCAAGCTATGCCGTAGGCGGGCAGAGCAACAAGAAGGTTTC
TCCTTTGGAGGCAGCGGTGGCAAGGGACAATCTTTGGATGATGATCCAGG
CGGTTATGGGGATTGTAGCTTCGAGCTTTACCTTCCAAGAGGTACGGGGC
CTTTCCATGGCAGCGACCAATTTATTGATTGATGGGTTTACCAATGCGGA
GCAGGATCGGATTTACCAGAAGTCTCGCGTCTCGCCTTATTACATGATGG
CCATGGTCAATATCTGGTCGCTCATTTTCGCCTCATGTTTTCTGTTGTCG
GACTTGGTTTTACGGGAAGATGGATCCCAGCTGGCATATACTGTCAGGTT
TCTGACAACGTATCCGGCAATCATCAGGGATTTGCTCACGTTTAGCTTTT
CGAACGCGGTGGGGCAGGTGTTTATCTACAGCATCATTGATGAGTTTGGG
AGCTTGGTGTCGGTCACAGTTACGGTGACTCGCAAAATGATCACGCTTTT
TATCAGCATCATCGCGTACAAGCATGCGGTGCACTGGTGGCAGTGGATGG
GCGTAGCTTCTGTCTTTATCGGTCTTGGTATCAAAGTCTTGTGGGGCGGT
GGTGGGCATGGCCATGGCGCAACAGCAGCAATTGCCAAGTCCAAGACCAA
GTAAGAGAGAGATCCGCGTCCGCACGTATTTCAAACCACAGCCATCGATT
TGTTGCTGCAGCGGCGACAGTTGCGAGGACATTTATGGACACGCACAAAG
ATTTGATTGGGGGATAAAAAGACTGACGGAATACGCTTTGATGATGGCAA
AACAAGAACAAAACCACGAAATTGTGGCCGCGTGTATGTGTACGGGCTGG
GAGAGTATTTTTAAAACAGTAATATATACCCACAAGGCACGCACAACAGA
AGGACGACGAACAAGAAAATTAAA
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protein sequence of NO13G02420.1

>NO13G02420.1-protein ID=NO13G02420.1-protein|Name=NO13G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp
MAVQTRRQSMGGNATAAAIAARSIGTKKTAKAQPHESGSGVRLLIKALGI
YVCFIYWGLVQERVTTTAYKPAADLDAKPGRFNAMAALNAFMAAAAVIVG
LILHQLTKGTTAPFTTFWRPALSNTIASPIGYMSLRDISYPLLILVKNCK
LLPVMLVGAVVNGVRYKTYEYVAVALISCGVMLFMVKGPQASGEGGRHGG
HYDISASYAVGGQSNKKVSPLEAAVARDNLWMMIQAVMGIVASSFTFQEV
RGLSMAATNLLIDGFTNAEQDRIYQKSRVSPYYMMAMVNIWSLIFASCFL
LSDLVLREDGSQLAYTVRFLTTYPAIIRDLLTFSFSNAVGQVFIYSIIDE
FGSLVSVTVTVTRKMITLFISIIAYKHAVHWWQWMGVASVFIGLGIKVLW
GGGGHGHGATAAIAKSKTK*
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mRNA from alignment at chr13:669095..670912+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02420.1 ID=NO13G02420.1|Name=NO13G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1818bp|location=Sequence derived from alignment at chr13:669095..670912+ (Nannochloropsis oceanica)
ACAGACTAGACCTTATTCCCTGCCGTCGCACCACCTCCCCACCCCTACTG
CAAGAAGATAGGAAGAACCAGCTTTCCCGCTCAAAAATCCCTGAAAGACT
ACTCAGAGCGGCAGCTGTGGTCAAGGGTGACCCGTTGTCAAGACATGGCG
GTGCAAACGAGGCGGCAGTCCATGGGGGGAAATGCCACTGCCGCGGCCAT
TGCTGCCAGAAGCATAGGCACTAAAAAGACTGCCAAGGCACAACCTCATG
AGAGCGGAAGCGGGGTCCGATTGTTGATTAAAGCCTTGGGCATCTATGTT
TGCTTCATTTACTGGGGCCTTGTGCAAGAAAGAGTGACCACCACTGCTTA
CAAGCCAGCAGCCGATTTGGACGCCAAGCCCGGCAGGTTCAATGCCATGG
CCGCGCTCAACGCCTTCATGGCCGCTGCCGCCGTGATTGTAGGCTTGATC
CTACACCAGTTGACCAAGGGCACCACCGCCCCTTTTACCACCTTTTGGCG
GCCCGCGTTGAGCAACACTATTGCATCCCCAATCGGGTACATGTCGTTGC
GAGACATTTCATATCCCCTCCTCATTCTGGTGAAGAATTGCAAGCTCTTG
CCAGTCATGCTTGTAGGCGCTGTCGTGAATGGCGTGCGTTACAAGACATA
TGAATACGTGGCCGTGGCGTTGATTTCATGTGGCGTGATGCTATTTATGG
TCAAGGGACCTCAAGCCAGTGGTGAAGGGGGCCGTCACGGCGGGCACTAC
GACATAAGCGCAAGCTATGCCGTAGGCGGGCAGAGCAACAAGAAGGTTTC
TCCTTTGGAGGCAGCGGTGGCAAGGGACAATCTTTGGATGATGATCCAGG
CGGTTATGGGGATTGTAGCTTCGAGCTTTACCTTCCAAGAGGTACGGGGC
CTTTCCATGGCAGCGACCAATTTATTGATTGATGGGTTTACCAATGCGGA
GCAGGATCGGATTTACCAGAAGTCTCGCGTCTCGCCTTATTACATGATGG
CCATGGTCAATATCTGGTCGCTCATTTTCGCCTCATGTTTTCTGTTGTCG
GACTTGGTTTTACGGGAAGATGGATCCCAGCTGGCATATACTGTCAGGTT
TCTGACAACGTATCCGGCAATCATCAGGGATTTGCTCACGTTTAGCTTTT
CGAACGCGGTGGGGCAGGTGTTTATCTACAGCATGTAAGTGCAATGGTCT
TTTCCTTCCGGACGTCCTCCTCTCCCTCGTTTGCCGACCATTTGACTTGT
TCTTGCTGGATTACTCACACCTTCTTCCTCTTCCCCACCTCCTCCTTTCC
TCACTCTCTCGCTCTCTTCCTGTTCTAGCATTGATGAGTTTGGGAGCTTG
GTGTCGGTCACAGTTACGGTGACTCGCAAAATGATCACGCTTTTTATCAG
CATCATCGCGTACAAGCATGCGGTGCACTGGTGGCAGTGGATGGGCGTAG
CTTCTGTCTTTATCGGTCTTGGTATCAAAGTCTTGTGGGGCGGTGGTGGG
CATGGCCATGGCGCAACAGCAGCAATTGCCAAGTCCAAGACCAAGTAAGA
GAGAGATCCGCGTCCGCACGTATTTCAAACCACAGCCATCGATTTGTTGC
TGCAGCGGCGACAGTTGCGAGGACATTTATGGACACGCACAAAGATTTGA
TTGGGGGATAAAAAGACTGACGGAATACGCTTTGATGATGGCAAAACAAG
AACAAAACCACGAAATTGTGGCCGCGTGTATGTGTACGGGCTGGGAGAGT
ATTTTTAAAACAGTAATATATACCCACAAGGCACGCACAACAGAAGGACG
ACGAACAAGAAAATTAAA
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Coding sequence (CDS) from alignment at chr13:669095..670912+

>NO13G02420.1 ID=NO13G02420.1|Name=NO13G02420.1|organism=Nannochloropsis oceanica|type=CDS|length=1260bp|location=Sequence derived from alignment at chr13:669095..670912+ (Nannochloropsis oceanica)
ATGGCGGTGCAAACGAGGCGGCAGTCCATGGGGGGAAATGCCACTGCCGC
GGCCATTGCTGCCAGAAGCATAGGCACTAAAAAGACTGCCAAGGCACAAC
CTCATGAGAGCGGAAGCGGGGTCCGATTGTTGATTAAAGCCTTGGGCATC
TATGTTTGCTTCATTTACTGGGGCCTTGTGCAAGAAAGAGTGACCACCAC
TGCTTACAAGCCAGCAGCCGATTTGGACGCCAAGCCCGGCAGGTTCAATG
CCATGGCCGCGCTCAACGCCTTCATGGCCGCTGCCGCCGTGATTGTAGGC
TTGATCCTACACCAGTTGACCAAGGGCACCACCGCCCCTTTTACCACCTT
TTGGCGGCCCGCGTTGAGCAACACTATTGCATCCCCAATCGGGTACATGT
CGTTGCGAGACATTTCATATCCCCTCCTCATTCTGGTGAAGAATTGCAAG
CTCTTGCCAGTCATGCTTGTAGGCGCTGTCGTGAATGGCGTGCGTTACAA
GACATATGAATACGTGGCCGTGGCGTTGATTTCATGTGGCGTGATGCTAT
TTATGGTCAAGGGACCTCAAGCCAGTGGTGAAGGGGGCCGTCACGGCGGG
CACTACGACATAAGCGCAAGCTATGCCGTAGGCGGGCAGAGCAACAAGAA
GGTTTCTCCTTTGGAGGCAGCGGTGGCAAGGGACAATCTTTGGATGATGA
TCCAGGCGGTTATGGGGATTGTAGCTTCGAGCTTTACCTTCCAAGAGGTA
CGGGGCCTTTCCATGGCAGCGACCAATTTATTGATTGATGGGTTTACCAA
TGCGGAGCAGGATCGGATTTACCAGAAGTCTCGCGTCTCGCCTTATTACA
TGATGGCCATGGTCAATATCTGGTCGCTCATTTTCGCCTCATGTTTTCTG
TTGTCGGACTTGGTTTTACGGGAAGATGGATCCCAGCTGGCATATACTGT
CAGGTTTCTGACAACGTATCCGGCAATCATCAGGGATTTGCTCACGTTTA
GCTTTTCGAACGCGGTGGGGCAGGTGTTTATCTACAGCATCATTGATGAG
TTTGGGAGCTTGGTGTCGGTCACAGTTACGGTGACTCGCAAAATGATCAC
GCTTTTTATCAGCATCATCGCGTACAAGCATGCGGTGCACTGGTGGCAGT
GGATGGGCGTAGCTTCTGTCTTTATCGGTCTTGGTATCAAAGTCTTGTGG
GGCGGTGGTGGGCATGGCCATGGCGCAACAGCAGCAATTGCCAAGTCCAA
GACCAAGTAA
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Synonyms
Publications