|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:669095..670912 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G02420.1 vs.
Match: EWM21922.1 (udp-glc gal endoplasmic reticulum nucleotide sugar transporter [Nannochloropsis gaditana]) HSP 1 Score: 523.5 bits (1347), Expect = 6.200e-145 Identity = 281/414 (67.87%), Postives = 317/414 (76.57%), Query Frame = 0
Query: 3 VQTRRQSMGGNATAAAIAARSIGTKKTAKAQPHESGSGVRLLIKALGIYVCFIYWGLVQERVTTTAYKPAADLDAKPGRFNAMAALNAFMAAAAVIVGLILHQLTKGTTAPFTTFWRPALSNTIASPIGYMSLRDISYPLLILVKNCKLLPVMLVGAVVNGVRYKTYEYVAVALISCGVMLFMVKGPQASGEGGRHGGHYDISASYAVGGQSNKKVSPLEAAVARDNLWMMIQAVMGIVASSFTFQEVRGLSMAATNLLIDGFTNAEQDRIYQKSRVSPYYMMAMVNIWSLIFASCFLLSDLVLREDGSQLAYTVRFLTTYPAIIRDLLTFSFSNAVGQVFIYSIIDEFGSLVSVTVTVTRKMITLFISIIAYKHAVHWWQWMGVASVFIGLGIKVLWGGGGHGHGATAAIAKS 417
VQTRR +M A R TA + +RL+ KALGIYVCFIYWG VQE+VTTTAYK AA KPG FNAM LNAFMAAAA IVG++LHQ+ KGTTAPF+ FWRPALSNT+ASPIGY+SLRDISYPLLILVKNCKLLPVMLVGA+VNGVRYK +EY AVALISCGVMLFM KGP+ S H D S ++ S+ + S L A+ARDNLWM+IQA+ G+V SSF+ QE+RGL MA NLLIDGFTNAEQDRI +K RVSPYYMMAMVN WSL FA FLL DL+ R GSQLAYT+ FLT YPAII D+LTFSFSNA+GQVFIYSIIDEFGSL VTVT+TRK+ITLFISI+ YKH VHWWQWMGV SVF+GL IK+ GG HGHG + AK+
Sbjct: 2 VQTRRMTMTTKAANTDFTKRD--ETFTANPPKKNISNAIRLMAKALGIYVCFIYWGFVQEKVTTTAYKSAAGRQEKPGIFNAMITLNAFMAAAATIVGVLLHQVNKGTTAPFSIFWRPALSNTLASPIGYLSLRDISYPLLILVKNCKLLPVMLVGALVNGVRYKPHEYAAVALISCGVMLFMFKGPEVSDADVGH----DSGWSKSIRTASHPRRSSLGDAIARDNLWMIIQALGGMVYSSFSLQELRGLCMAIINLLIDGFTNAEQDRINKKHRVSPYYMMAMVNTWSLCFALSFLLLDLIWRNQGSQLAYTIHFLTAYPAIITDILTFSFSNALGQVFIYSIIDEFGSLTCVTVTITRKIITLFISIVIYKHTVHWWQWMGVFSVFLGLCIKIFQSGGDHGHGPLESKAKT 409
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G02420.1 ID=NO13G02420.1|Name=NO13G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1674bp ACAGACTAGACCTTATTCCCTGCCGTCGCACCACCTCCCCACCCCTACTG CAAGAAGATAGGAAGAACCAGCTTTCCCGCTCAAAAATCCCTGAAAGACT ACTCAGAGCGGCAGCTGTGGTCAAGGGTGACCCGTTGTCAAGACATGGCG GTGCAAACGAGGCGGCAGTCCATGGGGGGAAATGCCACTGCCGCGGCCAT TGCTGCCAGAAGCATAGGCACTAAAAAGACTGCCAAGGCACAACCTCATG AGAGCGGAAGCGGGGTCCGATTGTTGATTAAAGCCTTGGGCATCTATGTT TGCTTCATTTACTGGGGCCTTGTGCAAGAAAGAGTGACCACCACTGCTTA CAAGCCAGCAGCCGATTTGGACGCCAAGCCCGGCAGGTTCAATGCCATGG CCGCGCTCAACGCCTTCATGGCCGCTGCCGCCGTGATTGTAGGCTTGATC CTACACCAGTTGACCAAGGGCACCACCGCCCCTTTTACCACCTTTTGGCG GCCCGCGTTGAGCAACACTATTGCATCCCCAATCGGGTACATGTCGTTGC GAGACATTTCATATCCCCTCCTCATTCTGGTGAAGAATTGCAAGCTCTTG CCAGTCATGCTTGTAGGCGCTGTCGTGAATGGCGTGCGTTACAAGACATA TGAATACGTGGCCGTGGCGTTGATTTCATGTGGCGTGATGCTATTTATGG TCAAGGGACCTCAAGCCAGTGGTGAAGGGGGCCGTCACGGCGGGCACTAC GACATAAGCGCAAGCTATGCCGTAGGCGGGCAGAGCAACAAGAAGGTTTC TCCTTTGGAGGCAGCGGTGGCAAGGGACAATCTTTGGATGATGATCCAGG CGGTTATGGGGATTGTAGCTTCGAGCTTTACCTTCCAAGAGGTACGGGGC CTTTCCATGGCAGCGACCAATTTATTGATTGATGGGTTTACCAATGCGGA GCAGGATCGGATTTACCAGAAGTCTCGCGTCTCGCCTTATTACATGATGG CCATGGTCAATATCTGGTCGCTCATTTTCGCCTCATGTTTTCTGTTGTCG GACTTGGTTTTACGGGAAGATGGATCCCAGCTGGCATATACTGTCAGGTT TCTGACAACGTATCCGGCAATCATCAGGGATTTGCTCACGTTTAGCTTTT CGAACGCGGTGGGGCAGGTGTTTATCTACAGCATCATTGATGAGTTTGGG AGCTTGGTGTCGGTCACAGTTACGGTGACTCGCAAAATGATCACGCTTTT TATCAGCATCATCGCGTACAAGCATGCGGTGCACTGGTGGCAGTGGATGG GCGTAGCTTCTGTCTTTATCGGTCTTGGTATCAAAGTCTTGTGGGGCGGT GGTGGGCATGGCCATGGCGCAACAGCAGCAATTGCCAAGTCCAAGACCAA GTAAGAGAGAGATCCGCGTCCGCACGTATTTCAAACCACAGCCATCGATT TGTTGCTGCAGCGGCGACAGTTGCGAGGACATTTATGGACACGCACAAAG ATTTGATTGGGGGATAAAAAGACTGACGGAATACGCTTTGATGATGGCAA AACAAGAACAAAACCACGAAATTGTGGCCGCGTGTATGTGTACGGGCTGG GAGAGTATTTTTAAAACAGTAATATATACCCACAAGGCACGCACAACAGA AGGACGACGAACAAGAAAATTAAA back to topprotein sequence of NO13G02420.1 >NO13G02420.1-protein ID=NO13G02420.1-protein|Name=NO13G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp MAVQTRRQSMGGNATAAAIAARSIGTKKTAKAQPHESGSGVRLLIKALGI YVCFIYWGLVQERVTTTAYKPAADLDAKPGRFNAMAALNAFMAAAAVIVG LILHQLTKGTTAPFTTFWRPALSNTIASPIGYMSLRDISYPLLILVKNCK LLPVMLVGAVVNGVRYKTYEYVAVALISCGVMLFMVKGPQASGEGGRHGG HYDISASYAVGGQSNKKVSPLEAAVARDNLWMMIQAVMGIVASSFTFQEV RGLSMAATNLLIDGFTNAEQDRIYQKSRVSPYYMMAMVNIWSLIFASCFL LSDLVLREDGSQLAYTVRFLTTYPAIIRDLLTFSFSNAVGQVFIYSIIDE FGSLVSVTVTVTRKMITLFISIIAYKHAVHWWQWMGVASVFIGLGIKVLW GGGGHGHGATAAIAKSKTK* back to topmRNA from alignment at chr13:669095..670912+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G02420.1 ID=NO13G02420.1|Name=NO13G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1818bp|location=Sequence derived from alignment at chr13:669095..670912+ (Nannochloropsis oceanica) ACAGACTAGACCTTATTCCCTGCCGTCGCACCACCTCCCCACCCCTACTG
CAAGAAGATAGGAAGAACCAGCTTTCCCGCTCAAAAATCCCTGAAAGACT
ACTCAGAGCGGCAGCTGTGGTCAAGGGTGACCCGTTGTCAAGACATGGCG
GTGCAAACGAGGCGGCAGTCCATGGGGGGAAATGCCACTGCCGCGGCCAT
TGCTGCCAGAAGCATAGGCACTAAAAAGACTGCCAAGGCACAACCTCATG
AGAGCGGAAGCGGGGTCCGATTGTTGATTAAAGCCTTGGGCATCTATGTT
TGCTTCATTTACTGGGGCCTTGTGCAAGAAAGAGTGACCACCACTGCTTA
CAAGCCAGCAGCCGATTTGGACGCCAAGCCCGGCAGGTTCAATGCCATGG
CCGCGCTCAACGCCTTCATGGCCGCTGCCGCCGTGATTGTAGGCTTGATC
CTACACCAGTTGACCAAGGGCACCACCGCCCCTTTTACCACCTTTTGGCG
GCCCGCGTTGAGCAACACTATTGCATCCCCAATCGGGTACATGTCGTTGC
GAGACATTTCATATCCCCTCCTCATTCTGGTGAAGAATTGCAAGCTCTTG
CCAGTCATGCTTGTAGGCGCTGTCGTGAATGGCGTGCGTTACAAGACATA
TGAATACGTGGCCGTGGCGTTGATTTCATGTGGCGTGATGCTATTTATGG
TCAAGGGACCTCAAGCCAGTGGTGAAGGGGGCCGTCACGGCGGGCACTAC
GACATAAGCGCAAGCTATGCCGTAGGCGGGCAGAGCAACAAGAAGGTTTC
TCCTTTGGAGGCAGCGGTGGCAAGGGACAATCTTTGGATGATGATCCAGG
CGGTTATGGGGATTGTAGCTTCGAGCTTTACCTTCCAAGAGGTACGGGGC
CTTTCCATGGCAGCGACCAATTTATTGATTGATGGGTTTACCAATGCGGA
GCAGGATCGGATTTACCAGAAGTCTCGCGTCTCGCCTTATTACATGATGG
CCATGGTCAATATCTGGTCGCTCATTTTCGCCTCATGTTTTCTGTTGTCG
GACTTGGTTTTACGGGAAGATGGATCCCAGCTGGCATATACTGTCAGGTT
TCTGACAACGTATCCGGCAATCATCAGGGATTTGCTCACGTTTAGCTTTT
CGAACGCGGTGGGGCAGGTGTTTATCTACAGCATGTAAGTGCAATGGTCT
TTTCCTTCCGGACGTCCTCCTCTCCCTCGTTTGCCGACCATTTGACTTGT
TCTTGCTGGATTACTCACACCTTCTTCCTCTTCCCCACCTCCTCCTTTCC
TCACTCTCTCGCTCTCTTCCTGTTCTAGCATTGATGAGTTTGGGAGCTTG
GTGTCGGTCACAGTTACGGTGACTCGCAAAATGATCACGCTTTTTATCAG
CATCATCGCGTACAAGCATGCGGTGCACTGGTGGCAGTGGATGGGCGTAG
CTTCTGTCTTTATCGGTCTTGGTATCAAAGTCTTGTGGGGCGGTGGTGGG
CATGGCCATGGCGCAACAGCAGCAATTGCCAAGTCCAAGACCAAGTAAGA
GAGAGATCCGCGTCCGCACGTATTTCAAACCACAGCCATCGATTTGTTGC
TGCAGCGGCGACAGTTGCGAGGACATTTATGGACACGCACAAAGATTTGA
TTGGGGGATAAAAAGACTGACGGAATACGCTTTGATGATGGCAAAACAAG
AACAAAACCACGAAATTGTGGCCGCGTGTATGTGTACGGGCTGGGAGAGT
ATTTTTAAAACAGTAATATATACCCACAAGGCACGCACAACAGAAGGACG
ACGAACAAGAAAATTAAA back to topCoding sequence (CDS) from alignment at chr13:669095..670912+ >NO13G02420.1 ID=NO13G02420.1|Name=NO13G02420.1|organism=Nannochloropsis oceanica|type=CDS|length=1260bp|location=Sequence derived from alignment at chr13:669095..670912+ (Nannochloropsis oceanica) ATGGCGGTGCAAACGAGGCGGCAGTCCATGGGGGGAAATGCCACTGCCGC GGCCATTGCTGCCAGAAGCATAGGCACTAAAAAGACTGCCAAGGCACAAC CTCATGAGAGCGGAAGCGGGGTCCGATTGTTGATTAAAGCCTTGGGCATC TATGTTTGCTTCATTTACTGGGGCCTTGTGCAAGAAAGAGTGACCACCAC TGCTTACAAGCCAGCAGCCGATTTGGACGCCAAGCCCGGCAGGTTCAATG CCATGGCCGCGCTCAACGCCTTCATGGCCGCTGCCGCCGTGATTGTAGGC TTGATCCTACACCAGTTGACCAAGGGCACCACCGCCCCTTTTACCACCTT TTGGCGGCCCGCGTTGAGCAACACTATTGCATCCCCAATCGGGTACATGT CGTTGCGAGACATTTCATATCCCCTCCTCATTCTGGTGAAGAATTGCAAG CTCTTGCCAGTCATGCTTGTAGGCGCTGTCGTGAATGGCGTGCGTTACAA GACATATGAATACGTGGCCGTGGCGTTGATTTCATGTGGCGTGATGCTAT TTATGGTCAAGGGACCTCAAGCCAGTGGTGAAGGGGGCCGTCACGGCGGG CACTACGACATAAGCGCAAGCTATGCCGTAGGCGGGCAGAGCAACAAGAA GGTTTCTCCTTTGGAGGCAGCGGTGGCAAGGGACAATCTTTGGATGATGA TCCAGGCGGTTATGGGGATTGTAGCTTCGAGCTTTACCTTCCAAGAGGTA CGGGGCCTTTCCATGGCAGCGACCAATTTATTGATTGATGGGTTTACCAA TGCGGAGCAGGATCGGATTTACCAGAAGTCTCGCGTCTCGCCTTATTACA TGATGGCCATGGTCAATATCTGGTCGCTCATTTTCGCCTCATGTTTTCTG TTGTCGGACTTGGTTTTACGGGAAGATGGATCCCAGCTGGCATATACTGT CAGGTTTCTGACAACGTATCCGGCAATCATCAGGGATTTGCTCACGTTTA GCTTTTCGAACGCGGTGGGGCAGGTGTTTATCTACAGCATCATTGATGAG TTTGGGAGCTTGGTGTCGGTCACAGTTACGGTGACTCGCAAAATGATCAC GCTTTTTATCAGCATCATCGCGTACAAGCATGCGGTGCACTGGTGGCAGT GGATGGGCGTAGCTTCTGTCTTTATCGGTCTTGGTATCAAAGTCTTGTGG GGCGGTGGTGGGCATGGCCATGGCGCAACAGCAGCAATTGCCAAGTCCAA GACCAAGTAA back to top
|