NO13G02380, NO13G02380 (gene) Nannochloropsis oceanica

Overview
NameNO13G02380
Unique NameNO13G02380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1262
Alignment locationchr13:660723..661984 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:660723..661984 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR013216Methyltransf_11
Homology
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BLAST of NO13G02380 vs. NCBI_GenBank
Match: EWM21902.1 (hypothetical protein Naga_100070g28 [Nannochloropsis gaditana])

HSP 1 Score: 465.3 bits (1196), Expect = 1.600e-127
Identity = 235/335 (70.15%), Postives = 276/335 (82.39%), Query Frame = 0 
Query:   13 LFIALLLLLAASCPQA------FLVLVPSHRRHR--PSRRFVLDPSIVKDVVTDVAQSGGGANGPQQVAEAMIQLLQGPSGVGIFGLVALSVRLYTYFTVQSYIAKLCTLFANSGTTVELRYGNSLRNLFYYEPGPGKMERLIVPTGDPKNIQTIAEVCARLKVAAKATYDVTALPESFEQLKLPADSVDTIVSTYMLNKSKQPLVTFTKAMELLRDDGILIFVEPVCGDNALLSFVRKYFGAIHRSTGAFGDPGLDIKTIVNVWAKNIGETEGVEIELDVEEQGYFFDPHVVGVMQKKRIDRGPEYEPSNSEKRKLARRKGMTAGSSKGFGGGS 340
            LF    +LLA    QA         L P  + HR   SR + LDP+     VTD A +GG   GPQQVAEAM+ LL+GPSGVGIFGL AL +RLYTYFTVQSYIAKLCTLFA++GTTVELRYGNSLRNLFYYEPGPGKM++L++P+GDPKN+QTIAEVCARLKVAAKATY VTALPE+FE LKLPA+SVDT+VSTYMLNKSKQPLVTF KAM++L+DDG+ +FVEPVCGDN LL  +RKY GAIHR+TGAFGDPGLD+K +VN WA+ +G+ EG+E++LDVEEQ YF DPH+VGVM K+++DRGP+YEPS SEKRKLARR+GMT  +SKGFG  S
Sbjct:   14 LFATSSILLAEGFHQAPGARTSVSSLRPPRQIHRLPQSRCYALDPAF----VTDAALNGGVGGGPQQVAEAMLALLRGPSGVGIFGLTALLIRLYTYFTVQSYIAKLCTLFADNGTTVELRYGNSLRNLFYYEPGPGKMDQLLIPSGDPKNLQTIAEVCARLKVAAKATYSVTALPETFEALKLPAESVDTVVSTYMLNKSKQPLVTFAKAMDMLKDDGVFVFVEPVCGDNPLLGGIRKYLGAIHRATGAFGDPGLDLKNLVNAWAEQVGKAEGIELDLDVEEQSYFLDPHIVGVMYKRKVDRGPDYEPSKSEKRKLARRRGMTT-TSKGFGSSS 343
The following BLAST results are available for this feature:
BLAST of NO13G02380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21902.11.600e-12770.15hypothetical protein Naga_100070g28 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001655NSK001655Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02380.1NO13G02380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596279gene_6773Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100070g28gene8533Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02380.1NO13G02380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02380 ID=NO13G02380|Name=NO13G02380|organism=Nannochloropsis oceanica|type=gene|length=1262bp
ACAGCAGGCATAATGGCAGGACCCAAGTATCATTGGACGGGTGCAGGGCT
TTTCATAGCTTTGCTTCTACTTCTCGCCGCGTCCTGTCCGCAAGCCTTCC
TCGTCCTTGTTCCATCCCACCGGCGGCACCGACCATCACGGCGCTTTGTG
CTGGATCCGTCCATAGTAAAAGATGTAGTCACGGATGTAGCGCAAAGCGG
TGGCGGTGCCAATGGCCCCCAGCAAGTCGCCGAGGCGATGATTCAGCTGC
TGCAAGGACCGTCTGGGGTGGGTATTTTCGGTTTGGTCGCCTTATCTGTG
AGGCTCTACACGTACTTCACTGTCCAGTCTTATATTGCCAAGCTGTGCAC
GCTCTTTGCAAATAGTGGGACGACAGTCGAGCTACGGTACGGCAACTCCC
TCCGGAACCTCTTCTATTACGAACCAGGTCCAGGGAAGATGGAGCGACTC
ATCGTGCCAACGGGCGACCCAAAGAATATTCAGACGATTGCCGAGgtgag
gagctctgctgtattgataatgatgccagtaaactaaagaacgataccag
acggtacttattatccgcaagttgccctttcatgcagtccttctatttat
ttttctctactcccttctcctttttcaacacacacagGTATGCGCCCGGC
TGAAAGTAGCGGCGAAGGCAACATATGATGTAACAGCACTTCCCGAGTCA
TTCGAACAACTGAAGCTGCCCGCTGATAGTGTCGACACTATCGTCTCAAC
GTACATGCTGAATAAGAGTAAGCAGCCCCTCGTGACCTTCACTAAGGCTA
TGGAGCTCCTCAGGGATGATGGTATTTTGATTTTCGTCGAACCTGTGTGT
GGGGACAATGCCCTCTTGAGCTTCGTCCGGAAATACTTTGGAGCCATACA
TCGATCCACAGGCGCGTTTGGAGACCCGGGGCTGGACATCAAGACGATCG
TGAATGTGTGGGCAAAGAATATTGGTGAGACAGAGGGTGTTGAGATCGAG
CTAGATGTGGAGGAGCAGGGTTACTTCTTCGACCCACACGTGGTCGGCGT
GATGCAGAAGAAGAGGATTGACCGGGGTCCGGAATACGAGCCGAGTAATT
CAGAAAAACGAAAGCTGGCGCGGAGAAAAGGGATGACGGCGGGTTCGAGC
AAGGGTTTTGGGGGGGGAAGTAAAGCAGAGGGACCGGGGGGCAAGTAAAT
ATGAGCTGGTTGCTATGAATGCAAAGAGTAGAATAAAAGCACACTAGTTA
CTCGTGCAAAAG
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protein sequence of NO13G02380.1

>NO13G02380.1-protein ID=NO13G02380.1-protein|Name=NO13G02380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=348bp
MAGPKYHWTGAGLFIALLLLLAASCPQAFLVLVPSHRRHRPSRRFVLDPS
IVKDVVTDVAQSGGGANGPQQVAEAMIQLLQGPSGVGIFGLVALSVRLYT
YFTVQSYIAKLCTLFANSGTTVELRYGNSLRNLFYYEPGPGKMERLIVPT
GDPKNIQTIAEVCARLKVAAKATYDVTALPESFEQLKLPADSVDTIVSTY
MLNKSKQPLVTFTKAMELLRDDGILIFVEPVCGDNALLSFVRKYFGAIHR
STGAFGDPGLDIKTIVNVWAKNIGETEGVEIELDVEEQGYFFDPHVVGVM
QKKRIDRGPEYEPSNSEKRKLARRKGMTAGSSKGFGGGSKAEGPGGK*
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Synonyms
Publications