NO13G02380.1, NO13G02380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02380.1
Unique NameNO13G02380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1120
Alignment locationchr13:660723..661984 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:660723..661984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02380.1 vs.
Match: EWM21902.1 (hypothetical protein Naga_100070g28 [Nannochloropsis gaditana])

HSP 1 Score: 465.3 bits (1196), Expect = 1.600e-127
Identity = 235/335 (70.15%), Postives = 276/335 (82.39%), Query Frame = 0 
Query:   13 LFIALLLLLAASCPQA------FLVLVPSHRRHR--PSRRFVLDPSIVKDVVTDVAQSGGGANGPQQVAEAMIQLLQGPSGVGIFGLVALSVRLYTYFTVQSYIAKLCTLFANSGTTVELRYGNSLRNLFYYEPGPGKMERLIVPTGDPKNIQTIAEVCARLKVAAKATYDVTALPESFEQLKLPADSVDTIVSTYMLNKSKQPLVTFTKAMELLRDDGILIFVEPVCGDNALLSFVRKYFGAIHRSTGAFGDPGLDIKTIVNVWAKNIGETEGVEIELDVEEQGYFFDPHVVGVMQKKRIDRGPEYEPSNSEKRKLARRKGMTAGSSKGFGGGS 340
            LF    +LLA    QA         L P  + HR   SR + LDP+ V    TD A +GG   GPQQVAEAM+ LL+GPSGVGIFGL AL +RLYTYFTVQSYIAKLCTLFA++GTTVELRYGNSLRNLFYYEPGPGKM++L++P+GDPKN+QTIAEVCARLKVAAKATY VTALPE+FE LKLPA+SVDT+VSTYMLNKSKQPLVTF KAM++L+DDG+ +FVEPVCGDN LL  +RKY GAIHR+TGAFGDPGLD+K +VN WA+ +G+ EG+E++LDVEEQ YF DPH+VGVM K+++DRGP+YEPS SEKRKLARR+GMT  +SKGFG  S
Sbjct:   14 LFATSSILLAEGFHQAPGARTSVSSLRPPRQIHRLPQSRCYALDPAFV----TDAALNGGVGGGPQQVAEAMLALLRGPSGVGIFGLTALLIRLYTYFTVQSYIAKLCTLFADNGTTVELRYGNSLRNLFYYEPGPGKMDQLLIPSGDPKNLQTIAEVCARLKVAAKATYSVTALPETFEALKLPAESVDTVVSTYMLNKSKQPLVTFAKAMDMLKDDGVFVFVEPVCGDNPLLGGIRKYLGAIHRATGAFGDPGLDLKNLVNAWAEQVGKAEGIELDLDVEEQSYFLDPHIVGVMYKRKVDRGPDYEPSKSEKRKLARRRGMTT-TSKGFGSSS 343
The following BLAST results are available for this feature:
BLAST of NO13G02380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21902.11.600e-12770.15hypothetical protein Naga_100070g28 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02380NO13G02380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02380.1NO13G02380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02380.1.cds1NO13G02380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02380.1.cds2NO13G02380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02380.1 ID=NO13G02380.1|Name=NO13G02380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1120bp
ACAGCAGGCATAATGGCAGGACCCAAGTATCATTGGACGGGTGCAGGGCT
TTTCATAGCTTTGCTTCTACTTCTCGCCGCGTCCTGTCCGCAAGCCTTCC
TCGTCCTTGTTCCATCCCACCGGCGGCACCGACCATCACGGCGCTTTGTG
CTGGATCCGTCCATAGTAAAAGATGTAGTCACGGATGTAGCGCAAAGCGG
TGGCGGTGCCAATGGCCCCCAGCAAGTCGCCGAGGCGATGATTCAGCTGC
TGCAAGGACCGTCTGGGGTGGGTATTTTCGGTTTGGTCGCCTTATCTGTG
AGGCTCTACACGTACTTCACTGTCCAGTCTTATATTGCCAAGCTGTGCAC
GCTCTTTGCAAATAGTGGGACGACAGTCGAGCTACGGTACGGCAACTCCC
TCCGGAACCTCTTCTATTACGAACCAGGTCCAGGGAAGATGGAGCGACTC
ATCGTGCCAACGGGCGACCCAAAGAATATTCAGACGATTGCCGAGGTATG
CGCCCGGCTGAAAGTAGCGGCGAAGGCAACATATGATGTAACAGCACTTC
CCGAGTCATTCGAACAACTGAAGCTGCCCGCTGATAGTGTCGACACTATC
GTCTCAACGTACATGCTGAATAAGAGTAAGCAGCCCCTCGTGACCTTCAC
TAAGGCTATGGAGCTCCTCAGGGATGATGGTATTTTGATTTTCGTCGAAC
CTGTGTGTGGGGACAATGCCCTCTTGAGCTTCGTCCGGAAATACTTTGGA
GCCATACATCGATCCACAGGCGCGTTTGGAGACCCGGGGCTGGACATCAA
GACGATCGTGAATGTGTGGGCAAAGAATATTGGTGAGACAGAGGGTGTTG
AGATCGAGCTAGATGTGGAGGAGCAGGGTTACTTCTTCGACCCACACGTG
GTCGGCGTGATGCAGAAGAAGAGGATTGACCGGGGTCCGGAATACGAGCC
GAGTAATTCAGAAAAACGAAAGCTGGCGCGGAGAAAAGGGATGACGGCGG
GTTCGAGCAAGGGTTTTGGGGGGGGAAGTAAAGCAGAGGGACCGGGGGGC
AAGTAAATATGAGCTGGTTGCTATGAATGCAAAGAGTAGAATAAAAGCAC
ACTAGTTACTCGTGCAAAAG
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protein sequence of NO13G02380.1

>NO13G02380.1-protein ID=NO13G02380.1-protein|Name=NO13G02380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=348bp
MAGPKYHWTGAGLFIALLLLLAASCPQAFLVLVPSHRRHRPSRRFVLDPS
IVKDVVTDVAQSGGGANGPQQVAEAMIQLLQGPSGVGIFGLVALSVRLYT
YFTVQSYIAKLCTLFANSGTTVELRYGNSLRNLFYYEPGPGKMERLIVPT
GDPKNIQTIAEVCARLKVAAKATYDVTALPESFEQLKLPADSVDTIVSTY
MLNKSKQPLVTFTKAMELLRDDGILIFVEPVCGDNALLSFVRKYFGAIHR
STGAFGDPGLDIKTIVNVWAKNIGETEGVEIELDVEEQGYFFDPHVVGVM
QKKRIDRGPEYEPSNSEKRKLARRKGMTAGSSKGFGGGSKAEGPGGK*
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mRNA from alignment at chr13:660723..661984+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02380.1 ID=NO13G02380.1|Name=NO13G02380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1262bp|location=Sequence derived from alignment at chr13:660723..661984+ (Nannochloropsis oceanica)
ACAGCAGGCATAATGGCAGGACCCAAGTATCATTGGACGGGTGCAGGGCT
TTTCATAGCTTTGCTTCTACTTCTCGCCGCGTCCTGTCCGCAAGCCTTCC
TCGTCCTTGTTCCATCCCACCGGCGGCACCGACCATCACGGCGCTTTGTG
CTGGATCCGTCCATAGTAAAAGATGTAGTCACGGATGTAGCGCAAAGCGG
TGGCGGTGCCAATGGCCCCCAGCAAGTCGCCGAGGCGATGATTCAGCTGC
TGCAAGGACCGTCTGGGGTGGGTATTTTCGGTTTGGTCGCCTTATCTGTG
AGGCTCTACACGTACTTCACTGTCCAGTCTTATATTGCCAAGCTGTGCAC
GCTCTTTGCAAATAGTGGGACGACAGTCGAGCTACGGTACGGCAACTCCC
TCCGGAACCTCTTCTATTACGAACCAGGTCCAGGGAAGATGGAGCGACTC
ATCGTGCCAACGGGCGACCCAAAGAATATTCAGACGATTGCCGAGGTGAG
GAGCTCTGCTGTATTGATAATGATGCCAGTAAACTAAAGAACGATACCAG
ACGGTACTTATTATCCGCAAGTTGCCCTTTCATGCAGTCCTTCTATTTAT
TTTTCTCTACTCCCTTCTCCTTTTTCAACACACACAGGTATGCGCCCGGC
TGAAAGTAGCGGCGAAGGCAACATATGATGTAACAGCACTTCCCGAGTCA
TTCGAACAACTGAAGCTGCCCGCTGATAGTGTCGACACTATCGTCTCAAC
GTACATGCTGAATAAGAGTAAGCAGCCCCTCGTGACCTTCACTAAGGCTA
TGGAGCTCCTCAGGGATGATGGTATTTTGATTTTCGTCGAACCTGTGTGT
GGGGACAATGCCCTCTTGAGCTTCGTCCGGAAATACTTTGGAGCCATACA
TCGATCCACAGGCGCGTTTGGAGACCCGGGGCTGGACATCAAGACGATCG
TGAATGTGTGGGCAAAGAATATTGGTGAGACAGAGGGTGTTGAGATCGAG
CTAGATGTGGAGGAGCAGGGTTACTTCTTCGACCCACACGTGGTCGGCGT
GATGCAGAAGAAGAGGATTGACCGGGGTCCGGAATACGAGCCGAGTAATT
CAGAAAAACGAAAGCTGGCGCGGAGAAAAGGGATGACGGCGGGTTCGAGC
AAGGGTTTTGGGGGGGGAAGTAAAGCAGAGGGACCGGGGGGCAAGTAAAT
ATGAGCTGGTTGCTATGAATGCAAAGAGTAGAATAAAAGCACACTAGTTA
CTCGTGCAAAAG
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Coding sequence (CDS) from alignment at chr13:660723..661984+

>NO13G02380.1 ID=NO13G02380.1|Name=NO13G02380.1|organism=Nannochloropsis oceanica|type=CDS|length=1044bp|location=Sequence derived from alignment at chr13:660723..661984+ (Nannochloropsis oceanica)
ATGGCAGGACCCAAGTATCATTGGACGGGTGCAGGGCTTTTCATAGCTTT
GCTTCTACTTCTCGCCGCGTCCTGTCCGCAAGCCTTCCTCGTCCTTGTTC
CATCCCACCGGCGGCACCGACCATCACGGCGCTTTGTGCTGGATCCGTCC
ATAGTAAAAGATGTAGTCACGGATGTAGCGCAAAGCGGTGGCGGTGCCAA
TGGCCCCCAGCAAGTCGCCGAGGCGATGATTCAGCTGCTGCAAGGACCGT
CTGGGGTGGGTATTTTCGGTTTGGTCGCCTTATCTGTGAGGCTCTACACG
TACTTCACTGTCCAGTCTTATATTGCCAAGCTGTGCACGCTCTTTGCAAA
TAGTGGGACGACAGTCGAGCTACGGTACGGCAACTCCCTCCGGAACCTCT
TCTATTACGAACCAGGTCCAGGGAAGATGGAGCGACTCATCGTGCCAACG
GGCGACCCAAAGAATATTCAGACGATTGCCGAGGTATGCGCCCGGCTGAA
AGTAGCGGCGAAGGCAACATATGATGTAACAGCACTTCCCGAGTCATTCG
AACAACTGAAGCTGCCCGCTGATAGTGTCGACACTATCGTCTCAACGTAC
ATGCTGAATAAGAGTAAGCAGCCCCTCGTGACCTTCACTAAGGCTATGGA
GCTCCTCAGGGATGATGGTATTTTGATTTTCGTCGAACCTGTGTGTGGGG
ACAATGCCCTCTTGAGCTTCGTCCGGAAATACTTTGGAGCCATACATCGA
TCCACAGGCGCGTTTGGAGACCCGGGGCTGGACATCAAGACGATCGTGAA
TGTGTGGGCAAAGAATATTGGTGAGACAGAGGGTGTTGAGATCGAGCTAG
ATGTGGAGGAGCAGGGTTACTTCTTCGACCCACACGTGGTCGGCGTGATG
CAGAAGAAGAGGATTGACCGGGGTCCGGAATACGAGCCGAGTAATTCAGA
AAAACGAAAGCTGGCGCGGAGAAAAGGGATGACGGCGGGTTCGAGCAAGG
GTTTTGGGGGGGGAAGTAAAGCAGAGGGACCGGGGGGCAAGTAA
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Synonyms
Publications